Genomic map of Staphylococcus phage vB_SepS_SEP9 (NC_023582)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023582
Definition
Staphylococcus phage vB_SepS_SEP9, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sextaecvirus.
DB of origin
REFSEQ
Length
92417
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
129
%GC
29.56
Number of singletons
8
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009007728.1 NC_023582_p65 cytosine specific DNA methyltransferase phrog_67 DNA methyltransferase other -1 53424 54101
YP_009007722.1 NC_023582_p59 hypothetical protein phrog_32016 unknown function unknown function -1 49528 50316
YP_009007776.1 NC_023582_p113 hypothetical protein phrog_31961 unknown function unknown function 1 84059 84355
YP_009007737.1 NC_023582_p74 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 59436 60482
YP_009007724.1 NC_023582_p61 nucleoside 2-deoxyribosyltransferase phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 50938 51531
YP_009007699.1 NC_023582_p36 endolysin phrog_635 endolysin lysis 1 34167 35453
YP_009007708.1 NC_023582_p45 hypothetical protein phrog_7235 unknown function unknown function -1 38838 39038
YP_009007790.1 NC_023582_p127 hypothetical protein phrog_29358 unknown function unknown function -1 90145 90462
YP_009007673.1 NC_023582_p10 capsid maturation protease phrog_36211 head maturation protease head and packaging 1 9650 10786
YP_009007786.1 NC_023582_p123 hypothetical protein phrog_4380 unknown function unknown function -1 88105 88404
YP_009007736.1 NC_023582_p73 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 58968 59423
YP_009007732.1 NC_023582_p69 holliday junction resolvase phrog_34902 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 55997 56434
YP_009007682.1 NC_023582_p19 hypothetical protein singleton unknown function unknown function 1 15070 15267
YP_009007770.1 NC_023582_p107 hypothetical protein phrog_11080 unknown function unknown function 1 81751 82137
YP_009007745.1 NC_023582_p82 hypothetical protein phrog_36705 unknown function unknown function -1 64741 65304
YP_009007756.1 NC_023582_p93 hypothetical protein phrog_419 unknown function unknown function -1 72368 72790
YP_009007715.1 NC_023582_p52 hypothetical protein phrog_22697 membrane protein moron, auxiliary metabolic gene and host takeover -1 42603 42878
YP_009007683.1 NC_023582_p20 hypothetical protein phrog_36133 unknown function unknown function -1 15365 15586
YP_009007739.1 NC_023582_p76 homing endonuclease phrog_4538 unknown function unknown function -1 62121 63107
YP_009007748.1 NC_023582_p85 ribonucleotide reductase alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 66919 70203
YP_009007710.1 NC_023582_p47 hypothetical protein phrog_19507 membrane protein moron, auxiliary metabolic gene and host takeover -1 39576 39995
YP_009007773.1 NC_023582_p110 hypothetical protein phrog_3077 unknown function unknown function 1 82794 83105
YP_009007752.1 NC_023582_p89 hypothetical protein singleton unknown function unknown function -1 70672 71160
YP_009007702.1 NC_023582_p39 hypothetical protein phrog_38061 unknown function unknown function -1 36935 37165
YP_009007691.1 NC_023582_p28 hypothetical protein phrog_134 unknown function unknown function 1 30795 30947
YP_009007687.1 NC_023582_p24 hypothetical protein phrog_13912 minor tail protein tail 1 25285 25914
YP_009007731.1 NC_023582_p68 PhoH-related protein phrog_170 PhoH-like phosphate starvation-inducible other -1 55254 55991
YP_009007759.1 NC_023582_p96 ATP/GTP binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 73574 74623
YP_009007703.1 NC_023582_p40 hypothetical protein phrog_36798 unknown function unknown function -1 37150 37422
YP_009007679.1 NC_023582_p16 hypothetical protein phrog_1217 tail protein tail 1 13493 13882
YP_009007723.1 NC_023582_p60 hypothetical protein singleton unknown function unknown function -1 50429 50857
YP_009007671.1 NC_023582_p8 terminase large subunit phrog_9 terminase large subunit head and packaging 1 6480 8135
YP_009007726.1 NC_023582_p63 hypothetical protein phrog_3093 unknown function unknown function -1 52480 52740
YP_009007669.1 NC_023582_p6 exonuclease phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 3657 4835
YP_009007688.1 NC_023582_p25 preneck appendage protein phrog_4775 pre-neck appendage protein connector 1 25927 28605
YP_009007738.1 NC_023582_p75 DNA heicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 60494 62131
YP_009007716.1 NC_023582_p53 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism -1 43001 43375
YP_009007744.1 NC_023582_p81 hypothetical protein phrog_28330 unknown function unknown function -1 64347 64754
YP_009007707.1 NC_023582_p44 hypothetical protein phrog_18936 membrane protein moron, auxiliary metabolic gene and host takeover -1 38472 38819
YP_009007749.1 NC_023582_p86 group I intron endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism -1 68081 68644
YP_009007769.1 NC_023582_p106 hypothetical protein singleton unknown function unknown function 1 81449 81730
YP_009007677.1 NC_023582_p14 head-tail adaptor protein phrog_25 head closure Hc1 connector 1 12745 13080
YP_009007753.1 NC_023582_p90 hypothetical protein phrog_27263 unknown function unknown function -1 71181 71522
YP_009007674.1 NC_023582_p11 major capsid protein phrog_10 major head protein head and packaging 1 10789 11949
YP_009007678.1 NC_023582_p15 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 13080 13496
YP_009007727.1 NC_023582_p64 methyltransferase phrog_799 DNA methyltransferase other -1 52838 53419
YP_009007746.1 NC_023582_p83 hypothetical protein phrog_883 flavodoxin moron, auxiliary metabolic gene and host takeover -1 65373 65810
YP_009007785.1 NC_023582_p122 hypothetical protein phrog_6390 unknown function unknown function -1 87960 88115
YP_009007697.1 NC_023582_p34 hypothetical protein phrog_2981 unknown function unknown function 1 33190 33714
YP_009007725.1 NC_023582_p62 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 51532 52437
YP_009007757.1 NC_023582_p94 hypothetical protein phrog_467 unknown function unknown function -1 72836 73240
YP_009007701.1 NC_023582_p38 hypothetical protein phrog_31926 unknown function unknown function -1 36614 36934
YP_009007762.1 NC_023582_p99 hypothetical protein singleton unknown function unknown function -1 75200 75571
YP_009007665.1 NC_023582_p2 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 206 607
YP_009007720.1 NC_023582_p57 hypothetical protein phrog_33466 unknown function unknown function -1 48474 48815
YP_009007718.1 NC_023582_p55 hypothetical protein phrog_28525 unknown function unknown function -1 44069 44338
YP_009007788.1 NC_023582_p125 hypothetical protein phrog_37538 unknown function unknown function -1 89308 89772
YP_009007675.1 NC_023582_p12 hypothetical protein phrog_28627 unknown function unknown function 1 12017 12241
YP_009007747.1 NC_023582_p84 ribonucleotide reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 65810 66850
YP_009007772.1 NC_023582_p109 hypothetical protein phrog_3325 TreN-like membrane protein other 1 82574 82720
YP_009007778.1 NC_023582_p115 hypothetical protein phrog_18594 unknown function unknown function -1 86008 86220
YP_009007750.1 NC_023582_p87 hypothetical protein phrog_1709 unknown function unknown function -1 70285 70518
YP_009007696.1 NC_023582_p33 holin phrog_962 holin lysis 1 32643 33122
YP_009007666.1 NC_023582_p3 terminase small subunit phrog_83 terminase small subunit head and packaging 1 626 1135
YP_009007735.1 NC_023582_p72 repair exonuclease phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 57220 58956
YP_009007764.1 NC_023582_p101 single-strand binding protein phrog_2367 unknown function unknown function -1 76460 77449
YP_009007775.1 NC_023582_p112 hypothetical protein phrog_10311 unknown function unknown function 1 83804 84043
YP_009007767.1 NC_023582_p104 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 79545 80081
YP_009007689.1 NC_023582_p26 receptor-binding protein phrog_257 minor tail protein tail 1 28605 30353
YP_009007670.1 NC_023582_p7 intron-associated endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 5666 6421
YP_009007695.1 NC_023582_p32 hypothetical protein phrog_2990 unknown function unknown function 1 32166 32621
YP_009007672.1 NC_023582_p9 portal protein phrog_12 portal protein head and packaging 1 8149 9624
YP_009007733.1 NC_023582_p70 hypothetical protein phrog_17186 unknown function unknown function -1 56571 56804
YP_009007706.1 NC_023582_p43 guanylate kinase phrog_1815 guanylate kinase other -1 37924 38457
YP_009007780.1 NC_023582_p117 hypothetical protein phrog_33067 unknown function unknown function -1 86570 86722
YP_009007717.1 NC_023582_p54 hypothetical protein phrog_8902 unknown function unknown function -1 43387 44052
YP_009007668.1 NC_023582_p5 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 3071 3637
YP_009007751.1 NC_023582_p88 hypothetical protein phrog_28008 unknown function unknown function -1 70506 70679
YP_009007755.1 NC_023582_p92 hypothetical protein singleton unknown function unknown function -1 71945 72079
YP_009007721.1 NC_023582_p58 hypothetical protein phrog_2642 unknown function unknown function -1 48881 49465
YP_009007700.1 NC_023582_p37 recombinase/integrase phrog_1 integrase integration and excision 1 35597 36577
YP_009007664.1 NC_023582_p1 hypothetical protein phrog_9700 unknown function unknown function 1 91 216
YP_009007684.1 NC_023582_p21 tail length tape-measure protein phrog_167 tail length tape measure protein tail 1 15685 22872
YP_009007777.1 NC_023582_p114 hypothetical protein singleton unknown function unknown function -1 85807 85932
YP_009007692.1 NC_023582_p29 hypothetical protein phrog_32206 unknown function unknown function 1 30959 31162
YP_009007734.1 NC_023582_p71 hypothetical protein phrog_33374 unknown function unknown function -1 56822 57061
YP_009007729.1 NC_023582_p66 hypothetical protein phrog_12198 unknown function unknown function -1 54169 54411
YP_009007711.1 NC_023582_p48 hypothetical protein phrog_4855 endolysin lysis -1 40020 40535
YP_009007740.1 NC_023582_p77 hypothetical protein phrog_4680 unknown function unknown function -1 63107 63595
YP_009007765.1 NC_023582_p102 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 77541 77777
YP_009007754.1 NC_023582_p91 hypothetical protein phrog_467 unknown function unknown function -1 71522 71929
YP_009007779.1 NC_023582_p116 hypothetical protein phrog_30342 unknown function unknown function -1 86232 86558
YP_009007758.1 NC_023582_p95 hypothetical protein phrog_32564 unknown function unknown function -1 73227 73457
YP_009007781.1 NC_023582_p118 hypothetical protein phrog_31655 unknown function unknown function -1 86839 87306
YP_009007741.1 NC_023582_p78 flavodoxin phrog_4743 unknown function unknown function -1 63685 63882
YP_009007771.1 NC_023582_p108 hypothetical protein phrog_28403 unknown function unknown function 1 82474 82560
YP_009007768.1 NC_023582_p105 hypothetical protein phrog_3164 unknown function unknown function 1 80905 81165
YP_009007782.1 NC_023582_p119 hypothetical protein phrog_37092 unknown function unknown function -1 87318 87509
YP_009007743.1 NC_023582_p80 hypothetical protein phrog_37816 unknown function unknown function -1 64179 64328
YP_009007705.1 NC_023582_p42 hypothetical protein phrog_38853 unknown function unknown function -1 37642 37920
YP_009007680.1 NC_023582_p17 major tail protein phrog_88 major tail protein tail 1 13906 14574
YP_009007667.1 NC_023582_p4 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 1234 2742
YP_009007789.1 NC_023582_p126 hypothetical protein phrog_32082 unknown function unknown function -1 89800 90129
YP_009007783.1 NC_023582_p120 hypothetical protein phrog_278 transcriptional regulator transcription regulation -1 87513 87665
YP_009007766.1 NC_023582_p103 response regulator phrog_5767 sigma factor transcription regulation -1 77792 78775
YP_009007690.1 NC_023582_p27 hypothetical protein phrog_1766 tail fiber protein tail 1 30367 30795
YP_009007698.1 NC_023582_p35 hypothetical protein phrog_36345 unknown function unknown function 1 33727 33843
YP_009007774.1 NC_023582_p111 hypothetical protein phrog_27501 unknown function unknown function 1 83197 83748
YP_009007784.1 NC_023582_p121 hypothetical protein phrog_32844 unknown function unknown function -1 87662 87895
YP_009007742.1 NC_023582_p79 hypothetical protein phrog_36894 unknown function unknown function -1 63884 64138
YP_009007761.1 NC_023582_p98 hypothetical protein phrog_31402 unknown function unknown function -1 74963 75187
YP_009007685.1 NC_023582_p22 receptor-binding protein phrog_33 distal tail protein Dit tail 1 22886 23722
YP_009007693.1 NC_023582_p30 hypothetical protein phrog_29134 tail protein tail 1 31167 31733
YP_009007686.1 NC_023582_p23 endopeptidase phrog_326 tail protein with endopeptidase domain other 1 23736 25292
YP_009007792.1 NC_023582_p129 hypothetical protein phrog_32286 unknown function unknown function -1 90884 91585
YP_009007704.1 NC_023582_p41 hypothetical protein phrog_38859 unknown function unknown function -1 37400 37654
YP_009007709.1 NC_023582_p46 hypothetical protein phrog_1486 membrane protein moron, auxiliary metabolic gene and host takeover -1 39116 39511
YP_009007791.1 NC_023582_p128 hypothetical protein phrog_19545 unknown function unknown function -1 90504 90827
YP_009007714.1 NC_023582_p51 hypothetical protein phrog_200 lipoprotein other -1 41806 42600
YP_009007760.1 NC_023582_p97 hypothetical protein phrog_37771 unknown function unknown function -1 74677 74940
YP_009007676.1 NC_023582_p13 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 12238 12741
YP_009007713.1 NC_023582_p50 hypothetical protein phrog_923 unknown function unknown function -1 40972 41691
YP_009007712.1 NC_023582_p49 hypothetical protein singleton unknown function unknown function -1 40599 40751
YP_009007719.1 NC_023582_p56 DNA polymerase phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 44399 48472
YP_009007730.1 NC_023582_p67 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 54466 55242
YP_009007694.1 NC_023582_p31 hypothetical protein phrog_2968 tail protein tail 1 31756 32193
YP_009007763.1 NC_023582_p100 HNH endonuclease phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism -1 75598 76470
YP_009007787.1 NC_023582_p124 HNH endonuclease phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism -1 88408 89220
YP_009007681.1 NC_023582_p18 hypothetical protein phrog_187 head-tail adaptor connector 1 14684 15028