| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023583 |
Definition |
Pseudomonas phage TL complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Bruynoghevirus. |
DB of origin |
REFSEQ |
Length |
45696 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
52.36 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009007793.1 | NC_023583_p1 | hypothetical protein | phrog_34855 | unknown function | unknown function | 1 | 412 | 579 |
| YP_009007799.1 | NC_023583_p7 | hypothetical protein | phrog_10516 | unknown function | unknown function | 1 | 3238 | 3501 |
| YP_009007853.1 | NC_023583_p61 | hypothetical protein | phrog_8161 | unknown function | unknown function | -1 | 39917 | 40108 |
| YP_009007826.1 | NC_023583_p34 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 20409 | 20969 |
| YP_009007845.1 | NC_023583_p53 | phage particle protein | phrog_3287 | virion structural protein | head and packaging | -1 | 34333 | 35874 |
| YP_009007832.1 | NC_023583_p40 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 23874 | 24224 |
| YP_009007838.1 | NC_023583_p46 | phage particle protein | phrog_8295 | virion structural protein | head and packaging | -1 | 26178 | 27065 |
| YP_009007856.1 | NC_023583_p64 | lysozyme | phrog_7 | endolysin | lysis | -1 | 43730 | 44227 |
| YP_009007827.1 | NC_023583_p35 | hypothetical protein | phrog_5033 | endolysin; inhibits RNA polymerase | lysis | 1 | 20947 | 21450 |
| YP_009007828.1 | NC_023583_p36 | hypothetical protein | phrog_8565 | unknown function | unknown function | 1 | 21422 | 21706 |
| YP_009007847.1 | NC_023583_p55 | hypothetical protein | phrog_8140 | unknown function | unknown function | -1 | 36520 | 36768 |
| YP_009007794.1 | NC_023583_p2 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 1322 | 1876 |
| YP_009007810.1 | NC_023583_p18 | hypothetical protein | phrog_9335 | unknown function | unknown function | 1 | 11891 | 12112 |
| YP_009007814.1 | NC_023583_p22 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 13903 | 15612 |
| YP_009007820.1 | NC_023583_p28 | holin | phrog_7045 | holin | lysis | 1 | 16966 | 17250 |
| YP_009007830.1 | NC_023583_p38 | 5'-3'-exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 22240 | 23070 |
| YP_009007842.1 | NC_023583_p50 | phage particle protein | phrog_7477 | unknown function | unknown function | -1 | 32294 | 33235 |
| YP_009007803.1 | NC_023583_p11 | hypothetical protein | phrog_23984 | unknown function | unknown function | 1 | 5055 | 5273 |
| YP_009007849.1 | NC_023583_p57 | phage particle protein | phrog_2941 | virion structural protein | head and packaging | -1 | 36954 | 37580 |
| YP_009007834.1 | NC_023583_p42 | hypothetical protein | phrog_9960 | unknown function | unknown function | 1 | 24975 | 25193 |
| YP_009007843.1 | NC_023583_p51 | hypothetical protein | phrog_7642 | unknown function | unknown function | -1 | 33216 | 33650 |
| YP_009007818.1 | NC_023583_p26 | hypothetical protein | phrog_9813 | unknown function | unknown function | 1 | 16633 | 16824 |
| YP_009007835.1 | NC_023583_p43 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 25197 | 25406 |
| YP_009007817.1 | NC_023583_p25 | hypothetical protein | phrog_12255 | unknown function | unknown function | 1 | 16419 | 16652 |
| YP_009007807.1 | NC_023583_p15 | hypothetical protein | phrog_3815 | COOH.NH2 ligase | other | 1 | 8255 | 9055 |
| YP_009007806.1 | NC_023583_p14 | hypothetical protein | phrog_7973 | unknown function | unknown function | 1 | 7299 | 8258 |
| YP_009007844.1 | NC_023583_p52 | hypothetical protein | phrog_8092 | unknown function | unknown function | -1 | 33647 | 34336 |
| YP_009007840.1 | NC_023583_p48 | phage particle protein | phrog_7725 | virion structural protein | head and packaging | -1 | 30395 | 31909 |
| YP_009007833.1 | NC_023583_p41 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 24217 | 24978 |
| YP_009007855.1 | NC_023583_p63 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 42282 | 43730 |
| YP_009007857.1 | NC_023583_p65 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 44160 | 44618 |
| YP_009007823.1 | NC_023583_p31 | DNA polymerase part II | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18033 | 19214 |
| YP_009007846.1 | NC_023583_p54 | tail fiber protein | phrog_5795 | tail protein | tail | -1 | 35883 | 36530 |
| YP_009007841.1 | NC_023583_p49 | phage particle protein | phrog_9927 | virion structural protein | head and packaging | -1 | 31914 | 32294 |
| YP_009007822.1 | NC_023583_p30 | hypothetical protein | phrog_9754 | unknown function | unknown function | 1 | 17835 | 18032 |
| YP_009007812.1 | NC_023583_p20 | hypothetical protein | phrog_2520 | gamma-glutamyl cyclotransferase | moron, auxiliary metabolic gene and host takeover | 1 | 13127 | 13525 |
| YP_009007837.1 | NC_023583_p45 | hypothetical protein | phrog_8259 | unknown function | unknown function | -1 | 25807 | 26163 |
| YP_009007811.1 | NC_023583_p19 | hypothetical protein | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 12243 | 13127 |
| YP_009007798.1 | NC_023583_p6 | hypothetical protein | phrog_11682 | unknown function | unknown function | 1 | 3082 | 3228 |
| YP_009007815.1 | NC_023583_p23 | 3'-5'-exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 15596 | 16105 |
| YP_009007805.1 | NC_023583_p13 | hypothetical protein | phrog_9504 | unknown function | unknown function | 1 | 6261 | 7280 |
| YP_009007801.1 | NC_023583_p9 | hypothetical protein | phrog_8299 | unknown function | unknown function | 1 | 4060 | 4485 |
| YP_009007851.1 | NC_023583_p59 | major head protein | phrog_1328 | major head protein | head and packaging | -1 | 37953 | 38906 |
| YP_009007816.1 | NC_023583_p24 | hypothetical protein | phrog_4590 | unknown function | unknown function | 1 | 16072 | 16383 |
| YP_009007804.1 | NC_023583_p12 | transposase fusion protein | phrog_200 | lipoprotein | other | 1 | 5283 | 6107 |
| YP_009007808.1 | NC_023583_p16 | hypothetical protein | phrog_4877 | unknown function | unknown function | 1 | 9048 | 9617 |
| YP_009007809.1 | NC_023583_p17 | toL-glutamine-D-fructose-6-phosphate aminotransferase | phrog_7631 | amidoligase enzyme | other | 1 | 9593 | 10768 |
| YP_009007852.1 | NC_023583_p60 | scaffolding protein | phrog_3927 | head scaffolding protein | head and packaging | -1 | 38925 | 39917 |
| YP_009007796.1 | NC_023583_p4 | hypothetical protein | phrog_10887 | unknown function | unknown function | 1 | 2303 | 2443 |
| YP_009007802.1 | NC_023583_p10 | hypothetical protein | phrog_11110 | unknown function | unknown function | 1 | 4616 | 4828 |
| YP_009007825.1 | NC_023583_p33 | DNA polymerase part III | phrog_24147 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 20058 | 20339 |
| YP_009007850.1 | NC_023583_p58 | hypothetical protein | phrog_3982 | unknown function | unknown function | -1 | 37584 | 37904 |
| YP_009007848.1 | NC_023583_p56 | hypothetical protein | phrog_402 | unknown function | unknown function | -1 | 36752 | 36943 |
| YP_009007836.1 | NC_023583_p44 | hypothetical protein | phrog_8402 | unknown function | unknown function | 1 | 25393 | 25599 |
| YP_009007839.1 | NC_023583_p47 | phage particle protein | phrog_6958 | virion structural protein | head and packaging | -1 | 27077 | 30244 |
| YP_009007829.1 | NC_023583_p37 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21706 | 22155 |
| YP_009007821.1 | NC_023583_p29 | hypothetical protein | phrog_7819 | tail length tape measure protein | tail | 1 | 17375 | 17830 |
| YP_009007795.1 | NC_023583_p3 | hypothetical protein | phrog_9596 | unknown function | unknown function | 1 | 2088 | 2306 |
| YP_009007824.1 | NC_023583_p32 | endonuclease | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 19284 | 19700 |
| YP_009007800.1 | NC_023583_p8 | hypothetical protein | phrog_9861 | unknown function | unknown function | 1 | 3491 | 3871 |
| YP_009007819.1 | NC_023583_p27 | hypothetical protein | phrog_9555 | unknown function | unknown function | 1 | 16814 | 16975 |
| YP_009007813.1 | NC_023583_p21 | hypothetical protein | phrog_8197 | unknown function | unknown function | 1 | 13525 | 13902 |
| YP_009007854.1 | NC_023583_p62 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 40162 | 42282 |
| YP_009007831.1 | NC_023583_p39 | hypothetical protein | phrog_7967 | unknown function | unknown function | 1 | 23045 | 24031 |
| YP_009007797.1 | NC_023583_p5 | hypothetical protein | phrog_12073 | unknown function | unknown function | 1 | 2623 | 2805 |