Genomic map of Stenotrophomonas phage Smp131 (NC_023588)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023588
Definition
Stenotrophomonas phage Smp131, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Simpcentumvirus; Stenotrophomonas virus Smp131.
DB of origin
REFSEQ
Length
33525
Host Name
Stenotrophomonas maltophilia
Host domain
Bacteria
Is prophage?
undef
Number of proteins
46
%GC
65.02
Number of singletons
11
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009008362.1 NC_023588_p7 phage terminase ATPase subunit phrog_2 terminase large subunit head and packaging -1 2789 4630
YP_009008360.1 NC_023588_p5 hypothetical protein singleton unknown function unknown function -1 1563 1820
YP_009008365.1 NC_023588_p10 phage terminase small subunit singleton terminase small subunit head and packaging 1 6658 7287
YP_009008394.1 NC_023588_p39 hypothetical protein phrog_14861 unknown function unknown function 1 25051 25296
YP_009008400.1 NC_023588_p45 hypothetical protein phrog_1599 unknown function unknown function 1 31886 32551
YP_009008368.1 NC_023588_p13 phage-encoded membrane protein phrog_198 holin lysis 1 8155 8508
YP_009008375.1 NC_023588_p20 baseplate assembly protein phrog_48 tail protein tail 1 11846 12514
YP_009008390.1 NC_023588_p35 bacteriophage transcriptional activator phrog_603 transcriptional regulator transcription regulation 1 23552 23896
YP_009008359.1 NC_023588_p4 site-specific DNA-methyltransferase phrog_67 DNA methyltransferase other -1 935 1645
YP_009008396.1 NC_023588_p41 hypothetical protein phrog_20416 unknown function unknown function 1 28204 28605
YP_009008381.1 NC_023588_p26 tail core protein phrog_55 head closure connector 1 17049 17558
YP_009008377.1 NC_023588_p22 hypothetical protein phrog_11610 unknown function unknown function 1 14196 14852
YP_009008374.1 NC_023588_p19 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 10963 11853
YP_009008357.1 NC_023588_p2 hypothetical protein singleton unknown function unknown function -1 391 642
YP_009008366.1 NC_023588_p11 phage head completion/stabilization protein phrog_71 head-tail adaptor Ad1 connector 1 7470 7937
YP_009008389.1 NC_023588_p34 phage-related protein singleton unknown function unknown function -1 22987 23151
YP_009008388.1 NC_023588_p33 phage late gene control protein phrog_52 tail protein tail 1 21514 22332
YP_009008382.1 NC_023588_p27 tail protein phrog_103 tail protein tail 1 17622 17909
YP_009008382.1 NC_023588_p27 tail protein phrog_103 tail protein tail 1 17909 18076
YP_009008401.1 NC_023588_p46 hypothetical protein singleton unknown function unknown function 1 32600 32812
YP_009008367.1 NC_023588_p12 tail protein phrog_46 baseplate hub tail 1 7937 8152
YP_009008391.1 NC_023588_p36 hypothetical protein phrog_33491 unknown function unknown function 1 23965 24171
YP_009008395.1 NC_023588_p40 DNA primase-like protein phrog_1139 DNA primase DNA, RNA and nucleotide metabolism 1 25406 27958
YP_009008397.1 NC_023588_p42 hypothetical protein singleton unknown function unknown function 1 29075 29458
YP_009008387.1 NC_023588_p32 phage tail protein phrog_76 tail protein tail 1 21119 21517
YP_009008385.1 NC_023588_p30 hypothetical protein singleton unknown function unknown function 1 18089 18226
YP_009008378.1 NC_023588_p23 baseplate assembly protein phrog_11 baseplate spike tail 1 15007 15492
YP_009008363.1 NC_023588_p8 phage capsid scaffolding protein phrog_73 head scaffolding protein head and packaging 1 4749 5699
YP_009008379.1 NC_023588_p24 baseplate assembly protein phrog_43 baseplate wedge subunit tail 1 15489 15848
YP_009008386.1 NC_023588_p31 phage tail tape measure protein phrog_28 tail length tape measure protein tail 1 18249 21107
YP_009008383.1 NC_023588_p28 tail protein phrog_103 tail protein tail 1 17622 17951
YP_009008392.1 NC_023588_p37 hypothetical protein phrog_17048 anti-repressor transcription regulation 1 24168 24740
YP_009008398.1 NC_023588_p43 phage integrase phrog_1 integrase integration and excision 1 29458 30636
YP_009008356.1 NC_023588_p1 hypothetical protein singleton unknown function unknown function -1 120 380
YP_009008376.1 NC_023588_p21 phage tail fiber protein phrog_8443 tail fiber protein tail 1 12412 14082
YP_009008399.1 NC_023588_p44 hypothetical protein singleton unknown function unknown function 1 30939 31835
YP_009008373.1 NC_023588_p18 tail completion protein phrog_26 tail completion or Neck1 protein connector 1 10415 10876
YP_009008358.1 NC_023588_p3 hypothetical protein singleton unknown function unknown function -1 676 966
YP_009008369.1 NC_023588_p14 phage-encoded membrane protein phrog_217 holin lysis 1 8501 8776
YP_009008370.1 NC_023588_p15 phage lytic enzyme phrog_181 endolysin lysis 1 8778 9641
YP_009008371.1 NC_023588_p16 hypothetical protein phrog_4952 signal peptide motif other 1 9448 9939
YP_009008384.1 NC_023588_p29 tail protein phrog_6416 tail protein tail 1 17960 18076
YP_009008372.1 NC_023588_p17 tail completion protein phrog_65 tail terminator connector 1 9936 10418
YP_009008393.1 NC_023588_p38 hypothetical protein singleton unknown function unknown function 1 24740 25051
YP_009008364.1 NC_023588_p9 phage major capsid protein precursor phrog_70 major head protein head and packaging 1 5642 6655
YP_009008361.1 NC_023588_p6 phage portal vertex protein phrog_68 portal protein head and packaging -1 1817 2752
YP_009008380.1 NC_023588_p25 major tail sheath protein phrog_23 tail sheath tail 1 15865 16908