| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023588 |
Definition |
Stenotrophomonas phage Smp131, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Simpcentumvirus; Stenotrophomonas virus Smp131. |
DB of origin |
REFSEQ |
Length |
33525 |
Host Name |
Stenotrophomonas maltophilia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
65.02 |
Number of singletons |
11 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009008362.1 | NC_023588_p7 | phage terminase ATPase subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 2789 | 4630 |
| YP_009008360.1 | NC_023588_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1563 | 1820 |
| YP_009008365.1 | NC_023588_p10 | phage terminase small subunit | singleton | terminase small subunit | head and packaging | 1 | 6658 | 7287 |
| YP_009008394.1 | NC_023588_p39 | hypothetical protein | phrog_14861 | unknown function | unknown function | 1 | 25051 | 25296 |
| YP_009008400.1 | NC_023588_p45 | hypothetical protein | phrog_1599 | unknown function | unknown function | 1 | 31886 | 32551 |
| YP_009008368.1 | NC_023588_p13 | phage-encoded membrane protein | phrog_198 | holin | lysis | 1 | 8155 | 8508 |
| YP_009008375.1 | NC_023588_p20 | baseplate assembly protein | phrog_48 | tail protein | tail | 1 | 11846 | 12514 |
| YP_009008390.1 | NC_023588_p35 | bacteriophage transcriptional activator | phrog_603 | transcriptional regulator | transcription regulation | 1 | 23552 | 23896 |
| YP_009008359.1 | NC_023588_p4 | site-specific DNA-methyltransferase | phrog_67 | DNA methyltransferase | other | -1 | 935 | 1645 |
| YP_009008396.1 | NC_023588_p41 | hypothetical protein | phrog_20416 | unknown function | unknown function | 1 | 28204 | 28605 |
| YP_009008381.1 | NC_023588_p26 | tail core protein | phrog_55 | head closure | connector | 1 | 17049 | 17558 |
| YP_009008377.1 | NC_023588_p22 | hypothetical protein | phrog_11610 | unknown function | unknown function | 1 | 14196 | 14852 |
| YP_009008374.1 | NC_023588_p19 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 10963 | 11853 |
| YP_009008357.1 | NC_023588_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 391 | 642 |
| YP_009008366.1 | NC_023588_p11 | phage head completion/stabilization protein | phrog_71 | head-tail adaptor Ad1 | connector | 1 | 7470 | 7937 |
| YP_009008389.1 | NC_023588_p34 | phage-related protein | singleton | unknown function | unknown function | -1 | 22987 | 23151 |
| YP_009008388.1 | NC_023588_p33 | phage late gene control protein | phrog_52 | tail protein | tail | 1 | 21514 | 22332 |
| YP_009008382.1 | NC_023588_p27 | tail protein | phrog_103 | tail protein | tail | 1 | 17622 | 17909 |
| YP_009008382.1 | NC_023588_p27 | tail protein | phrog_103 | tail protein | tail | 1 | 17909 | 18076 |
| YP_009008401.1 | NC_023588_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32600 | 32812 |
| YP_009008367.1 | NC_023588_p12 | tail protein | phrog_46 | baseplate hub | tail | 1 | 7937 | 8152 |
| YP_009008391.1 | NC_023588_p36 | hypothetical protein | phrog_33491 | unknown function | unknown function | 1 | 23965 | 24171 |
| YP_009008395.1 | NC_023588_p40 | DNA primase-like protein | phrog_1139 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 25406 | 27958 |
| YP_009008397.1 | NC_023588_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29075 | 29458 |
| YP_009008387.1 | NC_023588_p32 | phage tail protein | phrog_76 | tail protein | tail | 1 | 21119 | 21517 |
| YP_009008385.1 | NC_023588_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18089 | 18226 |
| YP_009008378.1 | NC_023588_p23 | baseplate assembly protein | phrog_11 | baseplate spike | tail | 1 | 15007 | 15492 |
| YP_009008363.1 | NC_023588_p8 | phage capsid scaffolding protein | phrog_73 | head scaffolding protein | head and packaging | 1 | 4749 | 5699 |
| YP_009008379.1 | NC_023588_p24 | baseplate assembly protein | phrog_43 | baseplate wedge subunit | tail | 1 | 15489 | 15848 |
| YP_009008386.1 | NC_023588_p31 | phage tail tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 18249 | 21107 |
| YP_009008383.1 | NC_023588_p28 | tail protein | phrog_103 | tail protein | tail | 1 | 17622 | 17951 |
| YP_009008392.1 | NC_023588_p37 | hypothetical protein | phrog_17048 | anti-repressor | transcription regulation | 1 | 24168 | 24740 |
| YP_009008398.1 | NC_023588_p43 | phage integrase | phrog_1 | integrase | integration and excision | 1 | 29458 | 30636 |
| YP_009008356.1 | NC_023588_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 120 | 380 |
| YP_009008376.1 | NC_023588_p21 | phage tail fiber protein | phrog_8443 | tail fiber protein | tail | 1 | 12412 | 14082 |
| YP_009008399.1 | NC_023588_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30939 | 31835 |
| YP_009008373.1 | NC_023588_p18 | tail completion protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 10415 | 10876 |
| YP_009008358.1 | NC_023588_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 676 | 966 |
| YP_009008369.1 | NC_023588_p14 | phage-encoded membrane protein | phrog_217 | holin | lysis | 1 | 8501 | 8776 |
| YP_009008370.1 | NC_023588_p15 | phage lytic enzyme | phrog_181 | endolysin | lysis | 1 | 8778 | 9641 |
| YP_009008371.1 | NC_023588_p16 | hypothetical protein | phrog_4952 | signal peptide motif | other | 1 | 9448 | 9939 |
| YP_009008384.1 | NC_023588_p29 | tail protein | phrog_6416 | tail protein | tail | 1 | 17960 | 18076 |
| YP_009008372.1 | NC_023588_p17 | tail completion protein | phrog_65 | tail terminator | connector | 1 | 9936 | 10418 |
| YP_009008393.1 | NC_023588_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24740 | 25051 |
| YP_009008364.1 | NC_023588_p9 | phage major capsid protein precursor | phrog_70 | major head protein | head and packaging | 1 | 5642 | 6655 |
| YP_009008361.1 | NC_023588_p6 | phage portal vertex protein | phrog_68 | portal protein | head and packaging | -1 | 1817 | 2752 |
| YP_009008380.1 | NC_023588_p25 | major tail sheath protein | phrog_23 | tail sheath | tail | 1 | 15865 | 16908 |