| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023589 |
Definition |
Shigella phage pSb-1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Gamaleyavirus. |
DB of origin |
REFSEQ |
Length |
71629 |
Host Name |
Shigella boydii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
103 |
%GC |
42.74 |
Number of singletons |
27 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009008438.1 | NC_023589_p37 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 24552 | 24665 |
| YP_009008490.1 | NC_023589_p89 | protein of an unannotated phage | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 51870 | 52742 |
| YP_009008405.1 | NC_023589_p4 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 1871 | 2611 |
| YP_009008421.1 | NC_023589_p20 | protein of an unannotated phage | phrog_7992 | tail spike protein | tail | -1 | 15381 | 15740 |
| YP_009008453.1 | NC_023589_p52 | protein of an unannotated phage | phrog_2072 | unknown function | unknown function | 1 | 28657 | 29007 |
| YP_009008502.1 | NC_023589_p101 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 60193 | 63879 |
| YP_009008467.1 | NC_023589_p66 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 35714 | 36175 |
| YP_009008411.1 | NC_023589_p10 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 7828 | 8583 |
| YP_009008419.1 | NC_023589_p18 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 13724 | 14188 |
| YP_009008407.1 | NC_023589_p6 | protein of an unannotated phage | phrog_2050 | virion structural protein | head and packaging | -1 | 4526 | 5362 |
| YP_009008484.1 | NC_023589_p83 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 46869 | 47096 |
| YP_009008417.1 | NC_023589_p16 | protein of an unannotated phage | phrog_5211 | unknown function | unknown function | -1 | 12591 | 12920 |
| YP_009008468.1 | NC_023589_p67 | protein of an unannotated phage | phrog_30358 | unknown function | unknown function | 1 | 36231 | 36845 |
| YP_009008432.1 | NC_023589_p31 | protein of an unannotated phage | phrog_11661 | unknown function | unknown function | 1 | 22706 | 23005 |
| YP_009008410.1 | NC_023589_p9 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 7364 | 7663 |
| YP_009008423.1 | NC_023589_p22 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 16101 | 16970 |
| YP_009008443.1 | NC_023589_p42 | protein of an unannotated phage | phrog_7840 | unknown function | unknown function | 1 | 25821 | 26006 |
| YP_009008482.1 | NC_023589_p81 | protein of an unannotated phage | phrog_4578 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46081 | 46389 |
| YP_009008501.1 | NC_023589_p100 | protein of an unannotated phage | phrog_9565 | unknown function | unknown function | 1 | 59870 | 60103 |
| YP_009008480.1 | NC_023589_p79 | protein of an unannotated phage | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 43459 | 45489 |
| YP_009008416.1 | NC_023589_p15 | protein of an unannotated phage | phrog_1356 | holin | lysis | -1 | 12346 | 12606 |
| YP_009008472.1 | NC_023589_p71 | protein of an unannotated phage | phrog_12812 | unknown function | unknown function | 1 | 38016 | 38408 |
| YP_009008475.1 | NC_023589_p74 | protein of an unannotated phage | phrog_12633 | unknown function | unknown function | 1 | 39791 | 40027 |
| YP_009008474.1 | NC_023589_p73 | protein of an unannotated phage | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 38851 | 39768 |
| YP_009008420.1 | NC_023589_p19 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 14200 | 15234 |
| YP_009008431.1 | NC_023589_p30 | protein of an unannotated phage | phrog_9160 | unknown function | unknown function | 1 | 22330 | 22728 |
| YP_009008454.1 | NC_023589_p53 | protein of an unannotated phage | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 29056 | 29871 |
| YP_009008418.1 | NC_023589_p17 | protein of an unannotated phage | phrog_17779 | unknown function | unknown function | 1 | 13045 | 13671 |
| YP_009008479.1 | NC_023589_p78 | protein of an unannotated phage | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 40887 | 43454 |
| YP_009008469.1 | NC_023589_p68 | protein of an unannotated phage | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | 1 | 36845 | 37351 |
| YP_009008478.1 | NC_023589_p77 | protein of an unannotated phage | phrog_9004 | unknown function | unknown function | 1 | 40526 | 40846 |
| YP_009008429.1 | NC_023589_p28 | protein of an unannotated phage | phrog_2109 | unknown function | unknown function | -1 | 20979 | 21668 |
| YP_009008460.1 | NC_023589_p59 | protein of an unannotated phage | phrog_7508 | unknown function | unknown function | 1 | 33012 | 33197 |
| YP_009008435.1 | NC_023589_p34 | protein of an unannotated phage | phrog_16338 | unknown function | unknown function | 1 | 23654 | 23980 |
| YP_009008470.1 | NC_023589_p69 | protein of an unannotated phage | phrog_7594 | unknown function | unknown function | 1 | 37382 | 37582 |
| YP_009008497.1 | NC_023589_p96 | protein of an unannotated phage | phrog_14773 | unknown function | unknown function | 1 | 57796 | 58050 |
| YP_009008428.1 | NC_023589_p27 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 20675 | 20986 |
| YP_009008437.1 | NC_023589_p36 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 24343 | 24510 |
| YP_009008463.1 | NC_023589_p62 | protein of an unannotated phage | phrog_21479 | unknown function | unknown function | 1 | 33744 | 33950 |
| YP_009008447.1 | NC_023589_p46 | protein of an unannotated phage | phrog_464 | unknown function | unknown function | 1 | 26588 | 26902 |
| YP_009008408.1 | NC_023589_p7 | protein of an unannotated phage | phrog_2130 | unknown function | unknown function | -1 | 5439 | 6071 |
| YP_009008481.1 | NC_023589_p80 | protein of an unannotated phage | phrog_6377 | unknown function | unknown function | 1 | 45552 | 45923 |
| YP_009008488.1 | NC_023589_p87 | protein of an unannotated phage | phrog_5974 | unknown function | unknown function | 1 | 51304 | 51609 |
| YP_009008486.1 | NC_023589_p85 | protein of an unannotated phage | phrog_4881 | unknown function | unknown function | 1 | 48188 | 48718 |
| YP_009008424.1 | NC_023589_p23 | protein of an unannotated phage | phrog_12242 | tail protein | tail | -1 | 17057 | 18685 |
| YP_009008493.1 | NC_023589_p92 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 55850 | 56170 |
| YP_009008499.1 | NC_023589_p98 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 59467 | 59619 |
| YP_009008500.1 | NC_023589_p99 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 59609 | 59746 |
| YP_009008457.1 | NC_023589_p56 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 31303 | 31758 |
| YP_009008477.1 | NC_023589_p76 | protein of an unannotated phage | phrog_7900 | unknown function | unknown function | 1 | 40321 | 40539 |
| YP_009008414.1 | NC_023589_p13 | protein of an unannotated phage | phrog_20026 | Rz-like spanin | lysis | -1 | 11234 | 11458 |
| YP_009008403.1 | NC_023589_p2 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 1415 | 1669 |
| YP_009008434.1 | NC_023589_p33 | protein of an unannotated phage | phrog_12606 | unknown function | unknown function | 1 | 23329 | 23667 |
| YP_009008404.1 | NC_023589_p3 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 1666 | 1857 |
| YP_009008496.1 | NC_023589_p95 | protein of an unannotated phage | phrog_7641 | unknown function | unknown function | 1 | 57202 | 57645 |
| YP_009008459.1 | NC_023589_p58 | protein of an unannotated phage | phrog_2973 | Hoc-like head decoration | head and packaging | 1 | 32073 | 32906 |
| YP_009008426.1 | NC_023589_p25 | protein of an unannotated phage | phrog_2125 | virion structural protein | head and packaging | -1 | 18882 | 19391 |
| YP_009008489.1 | NC_023589_p88 | protein of an unannotated phage | phrog_4521 | unknown function | unknown function | 1 | 51629 | 51892 |
| YP_009008442.1 | NC_023589_p41 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 25507 | 25677 |
| YP_009008503.1 | NC_023589_p102 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 63879 | 68240 |
| YP_009008464.1 | NC_023589_p63 | protein of an unannotated phage | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34023 | 34607 |
| YP_009008436.1 | NC_023589_p35 | protein of an unannotated phage | phrog_19797 | unknown function | unknown function | 1 | 23982 | 24116 |
| YP_009008455.1 | NC_023589_p54 | protein of an unannotated phage | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 29871 | 30485 |
| YP_009008504.1 | NC_023589_p103 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 68300 | 70981 |
| YP_009008441.1 | NC_023589_p40 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 25205 | 25543 |
| YP_009008430.1 | NC_023589_p29 | protein of an unannotated phage | phrog_7213 | unknown function | unknown function | 1 | 21852 | 22130 |
| YP_009008487.1 | NC_023589_p86 | protein of an unannotated phage | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 48728 | 51307 |
| YP_009008425.1 | NC_023589_p24 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 18682 | 18870 |
| YP_009008445.1 | NC_023589_p44 | protein of an unannotated phage | phrog_5407 | unknown function | unknown function | 1 | 26214 | 26396 |
| YP_009008440.1 | NC_023589_p39 | protein of an unannotated phage | phrog_20790 | unknown function | unknown function | 1 | 24954 | 25169 |
| YP_009008412.1 | NC_023589_p11 | protein of an unannotated phage | phrog_2346 | unknown function | unknown function | -1 | 8603 | 8947 |
| YP_009008466.1 | NC_023589_p65 | protein of an unannotated phage | phrog_1297 | ATPase | other | 1 | 34990 | 35664 |
| YP_009008458.1 | NC_023589_p57 | protein of an unannotated phage | phrog_12530 | unknown function | unknown function | 1 | 31816 | 31998 |
| YP_009008495.1 | NC_023589_p94 | protein of an unannotated phage | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 56646 | 57200 |
| YP_009008409.1 | NC_023589_p8 | protein of an unannotated phage | phrog_1357 | major head protein | head and packaging | -1 | 6145 | 7347 |
| YP_009008476.1 | NC_023589_p75 | protein of an unannotated phage | phrog_8099 | unknown function | unknown function | 1 | 40087 | 40311 |
| YP_009008492.1 | NC_023589_p91 | protein of an unannotated phage | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 55058 | 55810 |
| YP_009008406.1 | NC_023589_p5 | protein of an unannotated phage | phrog_2220 | unknown function | unknown function | -1 | 2563 | 4524 |
| YP_009008473.1 | NC_023589_p72 | protein of an unannotated phage | phrog_9867 | unknown function | unknown function | 1 | 38408 | 38851 |
| YP_009008485.1 | NC_023589_p84 | protein of an unannotated phage | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 47278 | 48177 |
| YP_009008491.1 | NC_023589_p90 | protein of an unannotated phage | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 52848 | 55001 |
| YP_009008494.1 | NC_023589_p93 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 56170 | 56646 |
| YP_009008462.1 | NC_023589_p61 | protein of an unannotated phage | phrog_11132 | unknown function | unknown function | 1 | 33380 | 33709 |
| YP_009008449.1 | NC_023589_p48 | protein of an unannotated phage | phrog_289 | GTP-binding domain | other | 1 | 27354 | 27710 |
| YP_009008413.1 | NC_023589_p12 | protein of an unannotated phage | phrog_1216 | portal protein | head and packaging | -1 | 8961 | 11231 |
| YP_009008451.1 | NC_023589_p50 | protein of an unannotated phage | phrog_7827 | unknown function | unknown function | 1 | 27962 | 28276 |
| YP_009008439.1 | NC_023589_p38 | protein of an unannotated phage | phrog_26357 | unknown function | unknown function | 1 | 24753 | 24899 |
| YP_009008446.1 | NC_023589_p45 | protein of an unannotated phage | phrog_7648 | unknown function | unknown function | 1 | 26381 | 26509 |
| YP_009008452.1 | NC_023589_p51 | protein of an unannotated phage | phrog_464 | unknown function | unknown function | 1 | 28273 | 28653 |
| YP_009008465.1 | NC_023589_p64 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 34797 | 34973 |
| YP_009008433.1 | NC_023589_p32 | protein of an unannotated phage | phrog_12099 | unknown function | unknown function | 1 | 23009 | 23332 |
| YP_009008461.1 | NC_023589_p60 | protein of an unannotated phage | phrog_7665 | unknown function | unknown function | 1 | 33194 | 33379 |
| YP_009008422.1 | NC_023589_p21 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 15791 | 16108 |
| YP_009008415.1 | NC_023589_p14 | protein of an unannotated phage | phrog_315 | endolysin | lysis | -1 | 11721 | 12356 |
| YP_009008402.1 | NC_023589_p1 | protein of an unannotated phage | phrog_6126 | virion structural protein | head and packaging | -1 | 71085 | 71629 |
| YP_009008402.1 | NC_023589_p1 | protein of an unannotated phage | phrog_6126 | virion structural protein | head and packaging | -1 | 1 | 1402 |
| YP_009008456.1 | NC_023589_p55 | protein of an unannotated phage | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 30542 | 31336 |
| YP_009008483.1 | NC_023589_p82 | protein of an unannotated phage | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 46392 | 46835 |
| YP_009008471.1 | NC_023589_p70 | protein of an unannotated phage | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 37656 | 37898 |
| YP_009008450.1 | NC_023589_p49 | protein of an unannotated phage | phrog_1972 | unknown function | unknown function | 1 | 27711 | 27965 |
| YP_009008448.1 | NC_023589_p47 | protein of an unannotated phage | phrog_6887 | unknown function | unknown function | 1 | 27136 | 27357 |
| YP_009008427.1 | NC_023589_p26 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | -1 | 19398 | 20669 |
| YP_009008444.1 | NC_023589_p43 | protein of an unannotated phage | phrog_34326 | unknown function | unknown function | 1 | 26011 | 26163 |
| YP_009008498.1 | NC_023589_p97 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 59115 | 59450 |