Genomic map of Shigella phage pSb-1 (NC_023589)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023589
Definition
Shigella phage pSb-1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Gamaleyavirus.
DB of origin
REFSEQ
Length
71629
Host Name
Shigella boydii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
103
%GC
42.74
Number of singletons
27
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009008438.1 NC_023589_p37 protein of an unannotated phage singleton unknown function unknown function 1 24552 24665
YP_009008490.1 NC_023589_p89 protein of an unannotated phage phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 51870 52742
YP_009008405.1 NC_023589_p4 protein of an unannotated phage singleton unknown function unknown function -1 1871 2611
YP_009008421.1 NC_023589_p20 protein of an unannotated phage phrog_7992 tail spike protein tail -1 15381 15740
YP_009008453.1 NC_023589_p52 protein of an unannotated phage phrog_2072 unknown function unknown function 1 28657 29007
YP_009008502.1 NC_023589_p101 protein of an unannotated phage singleton unknown function unknown function -1 60193 63879
YP_009008467.1 NC_023589_p66 protein of an unannotated phage singleton unknown function unknown function 1 35714 36175
YP_009008411.1 NC_023589_p10 protein of an unannotated phage singleton unknown function unknown function -1 7828 8583
YP_009008419.1 NC_023589_p18 protein of an unannotated phage singleton unknown function unknown function -1 13724 14188
YP_009008407.1 NC_023589_p6 protein of an unannotated phage phrog_2050 virion structural protein head and packaging -1 4526 5362
YP_009008484.1 NC_023589_p83 protein of an unannotated phage singleton unknown function unknown function 1 46869 47096
YP_009008417.1 NC_023589_p16 protein of an unannotated phage phrog_5211 unknown function unknown function -1 12591 12920
YP_009008468.1 NC_023589_p67 protein of an unannotated phage phrog_30358 unknown function unknown function 1 36231 36845
YP_009008432.1 NC_023589_p31 protein of an unannotated phage phrog_11661 unknown function unknown function 1 22706 23005
YP_009008410.1 NC_023589_p9 protein of an unannotated phage singleton unknown function unknown function -1 7364 7663
YP_009008423.1 NC_023589_p22 protein of an unannotated phage singleton unknown function unknown function -1 16101 16970
YP_009008443.1 NC_023589_p42 protein of an unannotated phage phrog_7840 unknown function unknown function 1 25821 26006
YP_009008482.1 NC_023589_p81 protein of an unannotated phage phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism 1 46081 46389
YP_009008501.1 NC_023589_p100 protein of an unannotated phage phrog_9565 unknown function unknown function 1 59870 60103
YP_009008480.1 NC_023589_p79 protein of an unannotated phage phrog_2886 RIIB lysis inhibitor lysis 1 43459 45489
YP_009008416.1 NC_023589_p15 protein of an unannotated phage phrog_1356 holin lysis -1 12346 12606
YP_009008472.1 NC_023589_p71 protein of an unannotated phage phrog_12812 unknown function unknown function 1 38016 38408
YP_009008475.1 NC_023589_p74 protein of an unannotated phage phrog_12633 unknown function unknown function 1 39791 40027
YP_009008474.1 NC_023589_p73 protein of an unannotated phage phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 38851 39768
YP_009008420.1 NC_023589_p19 protein of an unannotated phage singleton unknown function unknown function -1 14200 15234
YP_009008431.1 NC_023589_p30 protein of an unannotated phage phrog_9160 unknown function unknown function 1 22330 22728
YP_009008454.1 NC_023589_p53 protein of an unannotated phage phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 29056 29871
YP_009008418.1 NC_023589_p17 protein of an unannotated phage phrog_17779 unknown function unknown function 1 13045 13671
YP_009008479.1 NC_023589_p78 protein of an unannotated phage phrog_2979 RIIA lysis inhibitor lysis 1 40887 43454
YP_009008469.1 NC_023589_p68 protein of an unannotated phage phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism 1 36845 37351
YP_009008478.1 NC_023589_p77 protein of an unannotated phage phrog_9004 unknown function unknown function 1 40526 40846
YP_009008429.1 NC_023589_p28 protein of an unannotated phage phrog_2109 unknown function unknown function -1 20979 21668
YP_009008460.1 NC_023589_p59 protein of an unannotated phage phrog_7508 unknown function unknown function 1 33012 33197
YP_009008435.1 NC_023589_p34 protein of an unannotated phage phrog_16338 unknown function unknown function 1 23654 23980
YP_009008470.1 NC_023589_p69 protein of an unannotated phage phrog_7594 unknown function unknown function 1 37382 37582
YP_009008497.1 NC_023589_p96 protein of an unannotated phage phrog_14773 unknown function unknown function 1 57796 58050
YP_009008428.1 NC_023589_p27 protein of an unannotated phage singleton unknown function unknown function -1 20675 20986
YP_009008437.1 NC_023589_p36 protein of an unannotated phage singleton unknown function unknown function 1 24343 24510
YP_009008463.1 NC_023589_p62 protein of an unannotated phage phrog_21479 unknown function unknown function 1 33744 33950
YP_009008447.1 NC_023589_p46 protein of an unannotated phage phrog_464 unknown function unknown function 1 26588 26902
YP_009008408.1 NC_023589_p7 protein of an unannotated phage phrog_2130 unknown function unknown function -1 5439 6071
YP_009008481.1 NC_023589_p80 protein of an unannotated phage phrog_6377 unknown function unknown function 1 45552 45923
YP_009008488.1 NC_023589_p87 protein of an unannotated phage phrog_5974 unknown function unknown function 1 51304 51609
YP_009008486.1 NC_023589_p85 protein of an unannotated phage phrog_4881 unknown function unknown function 1 48188 48718
YP_009008424.1 NC_023589_p23 protein of an unannotated phage phrog_12242 tail protein tail -1 17057 18685
YP_009008493.1 NC_023589_p92 protein of an unannotated phage singleton unknown function unknown function 1 55850 56170
YP_009008499.1 NC_023589_p98 protein of an unannotated phage singleton unknown function unknown function 1 59467 59619
YP_009008500.1 NC_023589_p99 protein of an unannotated phage singleton unknown function unknown function 1 59609 59746
YP_009008457.1 NC_023589_p56 protein of an unannotated phage singleton unknown function unknown function 1 31303 31758
YP_009008477.1 NC_023589_p76 protein of an unannotated phage phrog_7900 unknown function unknown function 1 40321 40539
YP_009008414.1 NC_023589_p13 protein of an unannotated phage phrog_20026 Rz-like spanin lysis -1 11234 11458
YP_009008403.1 NC_023589_p2 protein of an unannotated phage singleton unknown function unknown function -1 1415 1669
YP_009008434.1 NC_023589_p33 protein of an unannotated phage phrog_12606 unknown function unknown function 1 23329 23667
YP_009008404.1 NC_023589_p3 protein of an unannotated phage singleton unknown function unknown function -1 1666 1857
YP_009008496.1 NC_023589_p95 protein of an unannotated phage phrog_7641 unknown function unknown function 1 57202 57645
YP_009008459.1 NC_023589_p58 protein of an unannotated phage phrog_2973 Hoc-like head decoration head and packaging 1 32073 32906
YP_009008426.1 NC_023589_p25 protein of an unannotated phage phrog_2125 virion structural protein head and packaging -1 18882 19391
YP_009008489.1 NC_023589_p88 protein of an unannotated phage phrog_4521 unknown function unknown function 1 51629 51892
YP_009008442.1 NC_023589_p41 protein of an unannotated phage singleton unknown function unknown function 1 25507 25677
YP_009008503.1 NC_023589_p102 protein of an unannotated phage singleton unknown function unknown function -1 63879 68240
YP_009008464.1 NC_023589_p63 protein of an unannotated phage phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34023 34607
YP_009008436.1 NC_023589_p35 protein of an unannotated phage phrog_19797 unknown function unknown function 1 23982 24116
YP_009008455.1 NC_023589_p54 protein of an unannotated phage phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 29871 30485
YP_009008504.1 NC_023589_p103 protein of an unannotated phage singleton unknown function unknown function -1 68300 70981
YP_009008441.1 NC_023589_p40 protein of an unannotated phage singleton unknown function unknown function 1 25205 25543
YP_009008430.1 NC_023589_p29 protein of an unannotated phage phrog_7213 unknown function unknown function 1 21852 22130
YP_009008487.1 NC_023589_p86 protein of an unannotated phage phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 48728 51307
YP_009008425.1 NC_023589_p24 protein of an unannotated phage singleton unknown function unknown function -1 18682 18870
YP_009008445.1 NC_023589_p44 protein of an unannotated phage phrog_5407 unknown function unknown function 1 26214 26396
YP_009008440.1 NC_023589_p39 protein of an unannotated phage phrog_20790 unknown function unknown function 1 24954 25169
YP_009008412.1 NC_023589_p11 protein of an unannotated phage phrog_2346 unknown function unknown function -1 8603 8947
YP_009008466.1 NC_023589_p65 protein of an unannotated phage phrog_1297 ATPase other 1 34990 35664
YP_009008458.1 NC_023589_p57 protein of an unannotated phage phrog_12530 unknown function unknown function 1 31816 31998
YP_009008495.1 NC_023589_p94 protein of an unannotated phage phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 56646 57200
YP_009008409.1 NC_023589_p8 protein of an unannotated phage phrog_1357 major head protein head and packaging -1 6145 7347
YP_009008476.1 NC_023589_p75 protein of an unannotated phage phrog_8099 unknown function unknown function 1 40087 40311
YP_009008492.1 NC_023589_p91 protein of an unannotated phage phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 55058 55810
YP_009008406.1 NC_023589_p5 protein of an unannotated phage phrog_2220 unknown function unknown function -1 2563 4524
YP_009008473.1 NC_023589_p72 protein of an unannotated phage phrog_9867 unknown function unknown function 1 38408 38851
YP_009008485.1 NC_023589_p84 protein of an unannotated phage phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 47278 48177
YP_009008491.1 NC_023589_p90 protein of an unannotated phage phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 52848 55001
YP_009008494.1 NC_023589_p93 protein of an unannotated phage singleton unknown function unknown function 1 56170 56646
YP_009008462.1 NC_023589_p61 protein of an unannotated phage phrog_11132 unknown function unknown function 1 33380 33709
YP_009008449.1 NC_023589_p48 protein of an unannotated phage phrog_289 GTP-binding domain other 1 27354 27710
YP_009008413.1 NC_023589_p12 protein of an unannotated phage phrog_1216 portal protein head and packaging -1 8961 11231
YP_009008451.1 NC_023589_p50 protein of an unannotated phage phrog_7827 unknown function unknown function 1 27962 28276
YP_009008439.1 NC_023589_p38 protein of an unannotated phage phrog_26357 unknown function unknown function 1 24753 24899
YP_009008446.1 NC_023589_p45 protein of an unannotated phage phrog_7648 unknown function unknown function 1 26381 26509
YP_009008452.1 NC_023589_p51 protein of an unannotated phage phrog_464 unknown function unknown function 1 28273 28653
YP_009008465.1 NC_023589_p64 protein of an unannotated phage singleton unknown function unknown function -1 34797 34973
YP_009008433.1 NC_023589_p32 protein of an unannotated phage phrog_12099 unknown function unknown function 1 23009 23332
YP_009008461.1 NC_023589_p60 protein of an unannotated phage phrog_7665 unknown function unknown function 1 33194 33379
YP_009008422.1 NC_023589_p21 protein of an unannotated phage singleton unknown function unknown function -1 15791 16108
YP_009008415.1 NC_023589_p14 protein of an unannotated phage phrog_315 endolysin lysis -1 11721 12356
YP_009008402.1 NC_023589_p1 protein of an unannotated phage phrog_6126 virion structural protein head and packaging -1 71085 71629
YP_009008402.1 NC_023589_p1 protein of an unannotated phage phrog_6126 virion structural protein head and packaging -1 1 1402
YP_009008456.1 NC_023589_p55 protein of an unannotated phage phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 30542 31336
YP_009008483.1 NC_023589_p82 protein of an unannotated phage phrog_671 nucleotide pyrophosphohydrolase other 1 46392 46835
YP_009008471.1 NC_023589_p70 protein of an unannotated phage phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover 1 37656 37898
YP_009008450.1 NC_023589_p49 protein of an unannotated phage phrog_1972 unknown function unknown function 1 27711 27965
YP_009008448.1 NC_023589_p47 protein of an unannotated phage phrog_6887 unknown function unknown function 1 27136 27357
YP_009008427.1 NC_023589_p26 protein of an unannotated phage phrog_38 terminase large subunit head and packaging -1 19398 20669
YP_009008444.1 NC_023589_p43 protein of an unannotated phage phrog_34326 unknown function unknown function 1 26011 26163
YP_009008498.1 NC_023589_p97 protein of an unannotated phage singleton unknown function unknown function 1 59115 59450