Genomic map of Bacillus phage phiCM3 (NC_023599)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023599
Definition
Bacillus phage phiCM3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38772
Host Name
Bacillus thuringiensis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
35.48
Number of singletons
7
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009009194.1 NC_023599_p50 hypothetical protein phrog_13754 unknown function unknown function 1 35536 35700
YP_009009165.1 NC_023599_p21 holin phrog_199 holin lysis 1 19761 20081
YP_009009172.1 NC_023599_p28 YdcL phrog_23783 integrase integration and excision -1 24554 25141
YP_009009178.1 NC_023599_p34 transcription regulator phrog_3 transcriptional repressor transcription regulation 1 27790 28026
YP_009009192.1 NC_023599_p48 hypothetical protein phrog_9357 unknown function unknown function 1 34363 34593
YP_009009145.1 NC_023599_p1 hypothetical protein phrog_7303 unknown function unknown function 1 45 242
YP_009009151.1 NC_023599_p7 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2126 3820
YP_009009169.1 NC_023599_p25 hypothetical protein phrog_6470 unknown function unknown function 1 22078 22398
YP_009009179.1 NC_023599_p35 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 28059 28247
YP_009009166.1 NC_023599_p22 N-acetylmuramoyl-L-alanine amidase phrog_1794 amidase lysis 1 20081 20782
YP_009009159.1 NC_023599_p15 hypothetical protein phrog_187 head-tail adaptor connector 1 9220 9537
YP_009009150.1 NC_023599_p6 terminase small subunit singleton unknown function unknown function 1 2011 2124
YP_009009190.1 NC_023599_p46 hypothetical protein phrog_3675 unknown function unknown function -1 33514 33813
YP_009009175.1 NC_023599_p31 hypothetical protein phrog_20324 unknown function unknown function 1 27138 27269
YP_009009200.1 NC_023599_p56 hypothetical protein phrog_8726 unknown function unknown function 1 38303 38548
YP_009009184.1 NC_023599_p40 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation 1 30047 30694
YP_009009168.1 NC_023599_p24 hypothetical protein phrog_1520 unknown function unknown function 1 21927 22058
YP_009009167.1 NC_023599_p23 hypothetical protein singleton unknown function unknown function 1 21236 21367
YP_009009189.1 NC_023599_p45 hypothetical protein phrog_643 transcriptional regulator transcription regulation 1 33302 33517
YP_009009163.1 NC_023599_p19 minor structural protein phrog_1775 minor head protein head and packaging 1 15174 19082
YP_009009149.1 NC_023599_p5 HNH endonuclease singleton HNH endonuclease DNA, RNA and nucleotide metabolism 1 1286 1633
YP_009009180.1 NC_023599_p36 hypothetical protein phrog_4292 unknown function unknown function 1 28271 28447
YP_009009158.1 NC_023599_p14 major tail protein phrog_88 major tail protein tail 1 8565 9173
YP_009009199.1 NC_023599_p55 integrase phrog_216 integrase integration and excision 1 37554 38096
YP_009009193.1 NC_023599_p49 hypothetical protein phrog_5780 unknown function unknown function 1 34617 35015
YP_009009186.1 NC_023599_p42 DNA replication protein-like protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 31799 32740
YP_009009191.1 NC_023599_p47 hypothetical protein phrog_6309 unknown function unknown function 1 33964 34263
YP_009009147.1 NC_023599_p3 hypothetical protein singleton unknown function unknown function 1 515 655
YP_009009160.1 NC_023599_p16 hypothetical protein phrog_8548 unknown function unknown function 1 9567 9743
YP_009009176.1 NC_023599_p32 transcription regulator, Cro/CI family phrog_8 transcriptional regulator transcription regulation -1 27297 27641
YP_009009195.1 NC_023599_p51 hypothetical protein phrog_36320 unknown function unknown function 1 36099 36257
YP_009009174.1 NC_023599_p30 hypothetical protein singleton unknown function unknown function 1 26838 26960
YP_009009177.1 NC_023599_p33 hypothetical protein singleton unknown function unknown function 1 27711 27815
YP_009009154.1 NC_023599_p10 major capsid protein phrog_10 major head protein head and packaging 1 5997 7163
YP_009009170.1 NC_023599_p26 cell division FtsK/SpoIIIE protein phrog_1358 FtsK/SpoIIIE-like protein moron, auxiliary metabolic gene and host takeover 1 22409 23575
YP_009009183.1 NC_023599_p39 hypothetical protein phrog_6048 unknown function unknown function 1 29434 29772
YP_009009185.1 NC_023599_p41 replication protein DnaD phrog_391 replication initiation O-like DNA, RNA and nucleotide metabolism 1 30949 31965
YP_009009187.1 NC_023599_p43 hypothetical protein phrog_2521 unknown function unknown function 1 32782 33048
YP_009009188.1 NC_023599_p44 hypothetical protein phrog_4556 unknown function unknown function 1 33120 33284
YP_009009196.1 NC_023599_p52 hypothetical protein phrog_13801 unknown function unknown function 1 36379 36714
YP_009009162.1 NC_023599_p18 tail fiber protein phrog_202 distal tail protein Dit tail 1 13693 15177
YP_009009153.1 NC_023599_p9 ATP-dependent endopeptidase clp proteolytic subunit clpP phrog_94 head maturation protease head and packaging 1 5180 5959
YP_009009161.1 NC_023599_p17 tail tape measure protein phrog_1533 tail length tape measure protein tail 1 9755 13681
YP_009009171.1 NC_023599_p27 hypothetical protein phrog_2190 replication initiation protein DNA, RNA and nucleotide metabolism 1 23565 24173
YP_009009157.1 NC_023599_p13 structure protein phrog_78 tail terminator connector 1 8205 8564
YP_009009146.1 NC_023599_p2 hypothetical protein phrog_4705 unknown function unknown function 1 259 498
YP_009009182.1 NC_023599_p38 hypothetical protein phrog_5266 unknown function unknown function 1 29321 29437
YP_009009152.1 NC_023599_p8 portal protein, HK97 family phrog_12 portal protein head and packaging 1 4186 5262
YP_009009148.1 NC_023599_p4 transglycosylase phrog_1315 unknown function unknown function 1 871 1125
YP_009009164.1 NC_023599_p20 XpaF1 protein singleton hemolysin other 1 19358 19555
YP_009009197.1 NC_023599_p53 hypothetical protein phrog_3928 unknown function unknown function 1 36880 37044
YP_009009155.1 NC_023599_p11 head-tail adaptor phrog_25 head closure Hc1 connector 1 7452 7781
YP_009009198.1 NC_023599_p54 transcriptional regulator phrog_248 transcriptional activator transcription regulation 1 37072 37557
YP_009009173.1 NC_023599_p29 HTH transcriptional regulator phrog_1728 transcriptional regulator transcription regulation 1 25658 26896
YP_009009181.1 NC_023599_p37 antirepressor phrog_463 anti-repressor transcription regulation 1 28575 29294
YP_009009156.1 NC_023599_p12 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 7774 8208