| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023599 |
Definition |
Bacillus phage phiCM3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
38772 |
Host Name |
Bacillus thuringiensis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
35.48 |
Number of singletons |
7 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009009194.1 | NC_023599_p50 | hypothetical protein | phrog_13754 | unknown function | unknown function | 1 | 35536 | 35700 |
| YP_009009165.1 | NC_023599_p21 | holin | phrog_199 | holin | lysis | 1 | 19761 | 20081 |
| YP_009009172.1 | NC_023599_p28 | YdcL | phrog_23783 | integrase | integration and excision | -1 | 24554 | 25141 |
| YP_009009178.1 | NC_023599_p34 | transcription regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 27790 | 28026 |
| YP_009009192.1 | NC_023599_p48 | hypothetical protein | phrog_9357 | unknown function | unknown function | 1 | 34363 | 34593 |
| YP_009009145.1 | NC_023599_p1 | hypothetical protein | phrog_7303 | unknown function | unknown function | 1 | 45 | 242 |
| YP_009009151.1 | NC_023599_p7 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2126 | 3820 |
| YP_009009169.1 | NC_023599_p25 | hypothetical protein | phrog_6470 | unknown function | unknown function | 1 | 22078 | 22398 |
| YP_009009179.1 | NC_023599_p35 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 28059 | 28247 |
| YP_009009166.1 | NC_023599_p22 | N-acetylmuramoyl-L-alanine amidase | phrog_1794 | amidase | lysis | 1 | 20081 | 20782 |
| YP_009009159.1 | NC_023599_p15 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 9220 | 9537 |
| YP_009009150.1 | NC_023599_p6 | terminase small subunit | singleton | unknown function | unknown function | 1 | 2011 | 2124 |
| YP_009009190.1 | NC_023599_p46 | hypothetical protein | phrog_3675 | unknown function | unknown function | -1 | 33514 | 33813 |
| YP_009009175.1 | NC_023599_p31 | hypothetical protein | phrog_20324 | unknown function | unknown function | 1 | 27138 | 27269 |
| YP_009009200.1 | NC_023599_p56 | hypothetical protein | phrog_8726 | unknown function | unknown function | 1 | 38303 | 38548 |
| YP_009009184.1 | NC_023599_p40 | RNA polymerase sigma factor | phrog_351 | RNA polymerase sigma factor | transcription regulation | 1 | 30047 | 30694 |
| YP_009009168.1 | NC_023599_p24 | hypothetical protein | phrog_1520 | unknown function | unknown function | 1 | 21927 | 22058 |
| YP_009009167.1 | NC_023599_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21236 | 21367 |
| YP_009009189.1 | NC_023599_p45 | hypothetical protein | phrog_643 | transcriptional regulator | transcription regulation | 1 | 33302 | 33517 |
| YP_009009163.1 | NC_023599_p19 | minor structural protein | phrog_1775 | minor head protein | head and packaging | 1 | 15174 | 19082 |
| YP_009009149.1 | NC_023599_p5 | HNH endonuclease | singleton | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1286 | 1633 |
| YP_009009180.1 | NC_023599_p36 | hypothetical protein | phrog_4292 | unknown function | unknown function | 1 | 28271 | 28447 |
| YP_009009158.1 | NC_023599_p14 | major tail protein | phrog_88 | major tail protein | tail | 1 | 8565 | 9173 |
| YP_009009199.1 | NC_023599_p55 | integrase | phrog_216 | integrase | integration and excision | 1 | 37554 | 38096 |
| YP_009009193.1 | NC_023599_p49 | hypothetical protein | phrog_5780 | unknown function | unknown function | 1 | 34617 | 35015 |
| YP_009009186.1 | NC_023599_p42 | DNA replication protein-like protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31799 | 32740 |
| YP_009009191.1 | NC_023599_p47 | hypothetical protein | phrog_6309 | unknown function | unknown function | 1 | 33964 | 34263 |
| YP_009009147.1 | NC_023599_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 515 | 655 |
| YP_009009160.1 | NC_023599_p16 | hypothetical protein | phrog_8548 | unknown function | unknown function | 1 | 9567 | 9743 |
| YP_009009176.1 | NC_023599_p32 | transcription regulator, Cro/CI family | phrog_8 | transcriptional regulator | transcription regulation | -1 | 27297 | 27641 |
| YP_009009195.1 | NC_023599_p51 | hypothetical protein | phrog_36320 | unknown function | unknown function | 1 | 36099 | 36257 |
| YP_009009174.1 | NC_023599_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26838 | 26960 |
| YP_009009177.1 | NC_023599_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27711 | 27815 |
| YP_009009154.1 | NC_023599_p10 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5997 | 7163 |
| YP_009009170.1 | NC_023599_p26 | cell division FtsK/SpoIIIE protein | phrog_1358 | FtsK/SpoIIIE-like protein | moron, auxiliary metabolic gene and host takeover | 1 | 22409 | 23575 |
| YP_009009183.1 | NC_023599_p39 | hypothetical protein | phrog_6048 | unknown function | unknown function | 1 | 29434 | 29772 |
| YP_009009185.1 | NC_023599_p41 | replication protein DnaD | phrog_391 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 30949 | 31965 |
| YP_009009187.1 | NC_023599_p43 | hypothetical protein | phrog_2521 | unknown function | unknown function | 1 | 32782 | 33048 |
| YP_009009188.1 | NC_023599_p44 | hypothetical protein | phrog_4556 | unknown function | unknown function | 1 | 33120 | 33284 |
| YP_009009196.1 | NC_023599_p52 | hypothetical protein | phrog_13801 | unknown function | unknown function | 1 | 36379 | 36714 |
| YP_009009162.1 | NC_023599_p18 | tail fiber protein | phrog_202 | distal tail protein Dit | tail | 1 | 13693 | 15177 |
| YP_009009153.1 | NC_023599_p9 | ATP-dependent endopeptidase clp proteolytic subunit clpP | phrog_94 | head maturation protease | head and packaging | 1 | 5180 | 5959 |
| YP_009009161.1 | NC_023599_p17 | tail tape measure protein | phrog_1533 | tail length tape measure protein | tail | 1 | 9755 | 13681 |
| YP_009009171.1 | NC_023599_p27 | hypothetical protein | phrog_2190 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 23565 | 24173 |
| YP_009009157.1 | NC_023599_p13 | structure protein | phrog_78 | tail terminator | connector | 1 | 8205 | 8564 |
| YP_009009146.1 | NC_023599_p2 | hypothetical protein | phrog_4705 | unknown function | unknown function | 1 | 259 | 498 |
| YP_009009182.1 | NC_023599_p38 | hypothetical protein | phrog_5266 | unknown function | unknown function | 1 | 29321 | 29437 |
| YP_009009152.1 | NC_023599_p8 | portal protein, HK97 family | phrog_12 | portal protein | head and packaging | 1 | 4186 | 5262 |
| YP_009009148.1 | NC_023599_p4 | transglycosylase | phrog_1315 | unknown function | unknown function | 1 | 871 | 1125 |
| YP_009009164.1 | NC_023599_p20 | XpaF1 protein | singleton | hemolysin | other | 1 | 19358 | 19555 |
| YP_009009197.1 | NC_023599_p53 | hypothetical protein | phrog_3928 | unknown function | unknown function | 1 | 36880 | 37044 |
| YP_009009155.1 | NC_023599_p11 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 7452 | 7781 |
| YP_009009198.1 | NC_023599_p54 | transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 37072 | 37557 |
| YP_009009173.1 | NC_023599_p29 | HTH transcriptional regulator | phrog_1728 | transcriptional regulator | transcription regulation | 1 | 25658 | 26896 |
| YP_009009181.1 | NC_023599_p37 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 28575 | 29294 |
| YP_009009156.1 | NC_023599_p12 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7774 | 8208 |