| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023604 |
Definition |
Mycobacterium phage Jolie2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
44306 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
68.06 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009009682.1 | NC_023604_p25 | hypothetical protein | phrog_27155 | unknown function | unknown function | 1 | 23801 | 24193 |
| YP_009009699.1 | NC_023604_p42 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 32418 | 33506 |
| YP_009009670.1 | NC_023604_p13 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 9130 | 9750 |
| YP_009009676.1 | NC_023604_p19 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 17715 | 18197 |
| YP_009009666.1 | NC_023604_p9 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 7539 | 8054 |
| YP_009009713.1 | NC_023604_p56 | hypothetical protein | phrog_25223 | unknown function | unknown function | 1 | 40342 | 40491 |
| YP_009009686.1 | NC_023604_p29 | holin | phrog_7198 | holin | lysis | 1 | 26991 | 27308 |
| YP_009009707.1 | NC_023604_p50 | hypothetical protein | phrog_7576 | unknown function | unknown function | 1 | 37238 | 38023 |
| YP_009009706.1 | NC_023604_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36690 | 37238 |
| YP_009009667.1 | NC_023604_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 8054 | 8407 |
| YP_009009696.1 | NC_023604_p39 | hypothetical protein | phrog_7392 | unknown function | unknown function | 1 | 31053 | 31388 |
| YP_009009662.1 | NC_023604_p5 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 5346 | 5543 |
| YP_009009674.1 | NC_023604_p17 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 14787 | 15974 |
| YP_009009704.1 | NC_023604_p47 | hypothetical protein | phrog_19129 | unknown function | unknown function | 1 | 36077 | 36436 |
| YP_009009694.1 | NC_023604_p37 | hypothetical protein | phrog_16899 | unknown function | unknown function | 1 | 30669 | 30899 |
| YP_009009668.1 | NC_023604_p11 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 8394 | 8687 |
| YP_009009709.1 | NC_023604_p52 | hypothetical protein | phrog_16002 | unknown function | unknown function | 1 | 38619 | 39107 |
| YP_009009710.1 | NC_023604_p53 | hypothetical protein | phrog_5845 | unknown function | unknown function | 1 | 39110 | 39634 |
| YP_009009718.1 | NC_023604_p61 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43385 | 43714 |
| YP_009009684.1 | NC_023604_p27 | lysin A | phrog_880 | endolysin | lysis | 1 | 24367 | 25716 |
| YP_009009665.1 | NC_023604_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7212 | 7523 |
| YP_009009690.1 | NC_023604_p33 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 28664 | 29023 |
| YP_009009719.1 | NC_023604_p62 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 43752 | 44042 |
| YP_009009702.1 | NC_023604_p45 | hypothetical protein | phrog_16515 | unknown function | unknown function | 1 | 35514 | 35675 |
| YP_009009714.1 | NC_023604_p57 | hypothetical protein | phrog_5436 | unknown function | unknown function | 1 | 40488 | 41270 |
| YP_009009693.1 | NC_023604_p36 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 30322 | 30672 |
| YP_009009712.1 | NC_023604_p55 | hypothetical protein | phrog_7600 | unknown function | unknown function | 1 | 39823 | 40269 |
| YP_009009661.1 | NC_023604_p4 | hypothetical protein | phrog_1752 | head maturation protease | head and packaging | 1 | 3415 | 5349 |
| YP_009009671.1 | NC_023604_p14 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 9852 | 10765 |
| YP_009009697.1 | NC_023604_p40 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 31370 | 31513 |
| YP_009009677.1 | NC_023604_p20 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 18194 | 19330 |
| YP_009009685.1 | NC_023604_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 25718 | 26938 |
| YP_009009659.1 | NC_023604_p2 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 376 | 1950 |
| YP_009009680.1 | NC_023604_p23 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 22241 | 23368 |
| YP_009009658.1 | NC_023604_p1 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 45 | 404 |
| YP_009009660.1 | NC_023604_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1947 | 3434 |
| YP_009009664.1 | NC_023604_p7 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6247 | 7173 |
| YP_009009700.1 | NC_023604_p43 | RecT | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33530 | 34966 |
| YP_009009673.1 | NC_023604_p16 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 10765 | 14787 |
| YP_009009695.1 | NC_023604_p38 | hypothetical protein | phrog_7486 | unknown function | unknown function | 1 | 30896 | 31060 |
| YP_009009669.1 | NC_023604_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8684 | 9133 |
| YP_009009692.1 | NC_023604_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29990 | 30325 |
| YP_009009691.1 | NC_023604_p34 | hypothetical protein | phrog_17562 | unknown function | unknown function | 1 | 29088 | 29993 |
| YP_009009672.1 | NC_023604_p15 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 9852 | 10367 |
| YP_009009708.1 | NC_023604_p51 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38020 | 38622 |
| YP_009009716.1 | NC_023604_p59 | PE-PPE like protein | phrog_9390 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41491 | 42402 |
| YP_009009711.1 | NC_023604_p54 | hypothetical protein | phrog_4974 | unknown function | unknown function | 1 | 39612 | 39821 |
| YP_009009679.1 | NC_023604_p22 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 19776 | 22241 |
| YP_009009689.1 | NC_023604_p32 | RDF protein | singleton | unknown function | unknown function | 1 | 28378 | 28671 |
| YP_009009675.1 | NC_023604_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15988 | 17715 |
| YP_009009681.1 | NC_023604_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23394 | 23783 |
| YP_009009683.1 | NC_023604_p26 | hypothetical protein | phrog_8517 | unknown function | unknown function | 1 | 24190 | 24354 |
| YP_009009663.1 | NC_023604_p6 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 5609 | 6208 |
| YP_009009701.1 | NC_023604_p44 | hypothetical protein | phrog_7227 | unknown function | unknown function | 1 | 34972 | 35517 |
| YP_009009698.1 | NC_023604_p41 | hypothetical protein | phrog_5931 | unknown function | unknown function | 1 | 31510 | 32421 |
| YP_009009705.1 | NC_023604_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36433 | 36693 |
| YP_009009703.1 | NC_023604_p46 | hypothetical protein | phrog_6938 | unknown function | unknown function | 1 | 35672 | 36001 |
| YP_009009687.1 | NC_023604_p30 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 27308 | 27706 |
| YP_009009715.1 | NC_023604_p58 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 41270 | 41452 |
| YP_009009688.1 | NC_023604_p31 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 27699 | 28331 |
| YP_009009717.1 | NC_023604_p60 | hypothetical protein | phrog_7328 | unknown function | unknown function | 1 | 43048 | 43362 |
| YP_009009678.1 | NC_023604_p21 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 19327 | 19776 |