Genomic map of Mycobacterium phage Jolie2 (NC_023604)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023604
Definition
Mycobacterium phage Jolie2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
44306
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
68.06
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009009682.1 NC_023604_p25 hypothetical protein phrog_27155 unknown function unknown function 1 23801 24193
YP_009009699.1 NC_023604_p42 RecE phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 32418 33506
YP_009009670.1 NC_023604_p13 major tail subunit phrog_117 major tail protein tail 1 9130 9750
YP_009009676.1 NC_023604_p19 minor tail protein phrog_1697 minor tail protein tail 1 17715 18197
YP_009009666.1 NC_023604_p9 hypothetical protein phrog_1290 head-tail adaptor connector 1 7539 8054
YP_009009713.1 NC_023604_p56 hypothetical protein phrog_25223 unknown function unknown function 1 40342 40491
YP_009009686.1 NC_023604_p29 holin phrog_7198 holin lysis 1 26991 27308
YP_009009707.1 NC_023604_p50 hypothetical protein phrog_7576 unknown function unknown function 1 37238 38023
YP_009009706.1 NC_023604_p49 hypothetical protein singleton unknown function unknown function 1 36690 37238
YP_009009667.1 NC_023604_p10 hypothetical protein phrog_763 head-tail adaptor connector 1 8054 8407
YP_009009696.1 NC_023604_p39 hypothetical protein phrog_7392 unknown function unknown function 1 31053 31388
YP_009009662.1 NC_023604_p5 hypothetical protein phrog_1757 unknown function unknown function 1 5346 5543
YP_009009674.1 NC_023604_p17 hypothetical protein phrog_106 minor tail protein tail 1 14787 15974
YP_009009704.1 NC_023604_p47 hypothetical protein phrog_19129 unknown function unknown function 1 36077 36436
YP_009009694.1 NC_023604_p37 hypothetical protein phrog_16899 unknown function unknown function 1 30669 30899
YP_009009668.1 NC_023604_p11 hypothetical protein phrog_387 neck protein connector 1 8394 8687
YP_009009709.1 NC_023604_p52 hypothetical protein phrog_16002 unknown function unknown function 1 38619 39107
YP_009009710.1 NC_023604_p53 hypothetical protein phrog_5845 unknown function unknown function 1 39110 39634
YP_009009718.1 NC_023604_p61 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43385 43714
YP_009009684.1 NC_023604_p27 lysin A phrog_880 endolysin lysis 1 24367 25716
YP_009009665.1 NC_023604_p8 hypothetical protein singleton unknown function unknown function 1 7212 7523
YP_009009690.1 NC_023604_p33 hypothetical protein phrog_5081 unknown function unknown function 1 28664 29023
YP_009009719.1 NC_023604_p62 hypothetical protein phrog_4307 unknown function unknown function 1 43752 44042
YP_009009702.1 NC_023604_p45 hypothetical protein phrog_16515 unknown function unknown function 1 35514 35675
YP_009009714.1 NC_023604_p57 hypothetical protein phrog_5436 unknown function unknown function 1 40488 41270
YP_009009693.1 NC_023604_p36 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 30322 30672
YP_009009712.1 NC_023604_p55 hypothetical protein phrog_7600 unknown function unknown function 1 39823 40269
YP_009009661.1 NC_023604_p4 hypothetical protein phrog_1752 head maturation protease head and packaging 1 3415 5349
YP_009009671.1 NC_023604_p14 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 9852 10765
YP_009009697.1 NC_023604_p40 hypothetical protein phrog_6734 unknown function unknown function 1 31370 31513
YP_009009677.1 NC_023604_p20 minor tail protein phrog_1565 minor tail protein tail 1 18194 19330
YP_009009685.1 NC_023604_p28 lysin B phrog_102 endolysin lysis 1 25718 26938
YP_009009659.1 NC_023604_p2 terminase phrog_2 terminase large subunit head and packaging 1 376 1950
YP_009009680.1 NC_023604_p23 hypothetical protein phrog_416 minor tail protein tail 1 22241 23368
YP_009009658.1 NC_023604_p1 hypothetical protein phrog_1459 terminase small subunit head and packaging 1 45 404
YP_009009660.1 NC_023604_p3 portal protein phrog_104 portal protein head and packaging 1 1947 3434
YP_009009664.1 NC_023604_p7 capsid protein phrog_10 major head protein head and packaging 1 6247 7173
YP_009009700.1 NC_023604_p43 RecT phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33530 34966
YP_009009673.1 NC_023604_p16 tapemeasure phrog_971 endolysin lysis 1 10765 14787
YP_009009695.1 NC_023604_p38 hypothetical protein phrog_7486 unknown function unknown function 1 30896 31060
YP_009009669.1 NC_023604_p12 hypothetical protein phrog_123 tail terminator connector 1 8684 9133
YP_009009692.1 NC_023604_p35 hypothetical protein singleton unknown function unknown function 1 29990 30325
YP_009009691.1 NC_023604_p34 hypothetical protein phrog_17562 unknown function unknown function 1 29088 29993
YP_009009672.1 NC_023604_p15 tail assembly chaperone phrog_1861 unknown function unknown function 1 9852 10367
YP_009009708.1 NC_023604_p51 RuvC phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38020 38622
YP_009009716.1 NC_023604_p59 PE-PPE like protein phrog_9390 DNA binding protein DNA, RNA and nucleotide metabolism 1 41491 42402
YP_009009711.1 NC_023604_p54 hypothetical protein phrog_4974 unknown function unknown function 1 39612 39821
YP_009009679.1 NC_023604_p22 hypothetical protein phrog_346 minor tail protein tail 1 19776 22241
YP_009009689.1 NC_023604_p32 RDF protein singleton unknown function unknown function 1 28378 28671
YP_009009675.1 NC_023604_p18 minor tail protein phrog_110 minor tail protein tail 1 15988 17715
YP_009009681.1 NC_023604_p24 hypothetical protein phrog_240 head protein head and packaging 1 23394 23783
YP_009009683.1 NC_023604_p26 hypothetical protein phrog_8517 unknown function unknown function 1 24190 24354
YP_009009663.1 NC_023604_p6 hypothetical protein phrog_233 head scaffolding protein head and packaging 1 5609 6208
YP_009009701.1 NC_023604_p44 hypothetical protein phrog_7227 unknown function unknown function 1 34972 35517
YP_009009698.1 NC_023604_p41 hypothetical protein phrog_5931 unknown function unknown function 1 31510 32421
YP_009009705.1 NC_023604_p48 hypothetical protein singleton unknown function unknown function 1 36433 36693
YP_009009703.1 NC_023604_p46 hypothetical protein phrog_6938 unknown function unknown function 1 35672 36001
YP_009009687.1 NC_023604_p30 hypothetical protein phrog_1177 unknown function unknown function 1 27308 27706
YP_009009715.1 NC_023604_p58 hypothetical protein phrog_5505 unknown function unknown function 1 41270 41452
YP_009009688.1 NC_023604_p31 hypothetical protein phrog_798 unknown function unknown function 1 27699 28331
YP_009009717.1 NC_023604_p60 hypothetical protein phrog_7328 unknown function unknown function 1 43048 43362
YP_009009678.1 NC_023604_p21 hypothetical protein phrog_1736 minor tail protein tail 1 19327 19776