functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_023607 |
Definition |
Mycobacterium phage 40AC, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53396 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
63.33 |
Number of singletons |
4 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_009009883.1 | NC_023607_p49 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 33652 | 34380 |
YP_009009909.1 | NC_023607_p75 | hypothetical protein | phrog_5531 | unknown function | unknown function | -1 | 46469 | 46678 |
YP_009009859.1 | NC_023607_p25 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 16677 | 17117 |
YP_009009852.1 | NC_023607_p18 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 13636 | 14160 |
YP_009009864.1 | NC_023607_p30 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 21412 | 22422 |
YP_009009857.1 | NC_023607_p23 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 15977 | 16345 |
YP_009009869.1 | NC_023607_p35 | hypothetical protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 26822 | 27181 |
YP_009009839.1 | NC_023607_p5 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2296 | 2592 |
YP_009009910.1 | NC_023607_p76 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46687 | 46818 |
YP_009009919.1 | NC_023607_p85 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 50089 | 50289 |
YP_009009891.1 | NC_023607_p57 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38960 | 39262 |
YP_009009877.1 | NC_023607_p43 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 30202 | 30498 |
YP_009009853.1 | NC_023607_p19 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 14194 | 15159 |
YP_009009881.1 | NC_023607_p47 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 33055 | 33450 |
YP_009009906.1 | NC_023607_p72 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44878 | 45297 |
YP_009009880.1 | NC_023607_p46 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30977 | 33055 |
YP_009009899.1 | NC_023607_p65 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 42059 | 42289 |
YP_009009916.1 | NC_023607_p82 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | -1 | 48499 | 49035 |
YP_009009924.1 | NC_023607_p90 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51862 | 52143 |
YP_009009921.1 | NC_023607_p87 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 50485 | 50616 |
YP_009009843.1 | NC_023607_p9 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 5287 | 5973 |
YP_009009892.1 | NC_023607_p58 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 39259 | 39531 |
YP_009009894.1 | NC_023607_p60 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 40382 | 40519 |
YP_009009863.1 | NC_023607_p29 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 18647 | 21385 |
YP_009009879.1 | NC_023607_p45 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 30725 | 30946 |
YP_009009854.1 | NC_023607_p20 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 15229 | 15408 |
YP_009009884.1 | NC_023607_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34445 | 34942 |
YP_009009845.1 | NC_023607_p11 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 6438 | 6575 |
YP_009009873.1 | NC_023607_p39 | hypothetical protein | phrog_38291 | unknown function | unknown function | 1 | 28962 | 29216 |
YP_009009846.1 | NC_023607_p12 | lysin A | phrog_317 | endolysin | lysis | 1 | 6575 | 8080 |
YP_009009888.1 | NC_023607_p54 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 37369 | 38040 |
YP_009009882.1 | NC_023607_p48 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 33450 | 33650 |
YP_009009840.1 | NC_023607_p6 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 2633 | 3097 |
YP_009009866.1 | NC_023607_p32 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 24208 | 24654 |
YP_009009841.1 | NC_023607_p7 | structural protein | phrog_1260 | minor tail protein | tail | 1 | 3190 | 4152 |
YP_009009836.1 | NC_023607_p2 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 502 | 1272 |
YP_009009911.1 | NC_023607_p77 | RDF protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46806 | 47105 |
YP_009009905.1 | NC_023607_p71 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44066 | 44881 |
YP_009009897.1 | NC_023607_p63 | esterase/lipase protein | phrog_789 | esterase/lipase | other | -1 | 41086 | 41931 |
YP_009009842.1 | NC_023607_p8 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 4152 | 5285 |
YP_009009860.1 | NC_023607_p26 | tail protein | phrog_117 | major tail protein | tail | 1 | 17135 | 17728 |
YP_009009858.1 | NC_023607_p24 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 16345 | 16680 |
YP_009009861.1 | NC_023607_p27 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 17840 | 18669 |
YP_009009867.1 | NC_023607_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24651 | 24977 |
YP_009009889.1 | NC_023607_p55 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 38037 | 38189 |
YP_009009871.1 | NC_023607_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27587 | 27901 |
YP_009009874.1 | NC_023607_p40 | hypothetical protein | phrog_1712 | unknown function | unknown function | 1 | 29229 | 29498 |
YP_009009904.1 | NC_023607_p70 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43796 | 44020 |
YP_009009848.1 | NC_023607_p14 | lysin B | phrog_102 | endolysin | lysis | 1 | 8493 | 9470 |
YP_009009850.1 | NC_023607_p16 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 11241 | 12704 |
YP_009009868.1 | NC_023607_p34 | structural protein | phrog_737 | minor tail protein | tail | 1 | 24978 | 26762 |
YP_009009914.1 | NC_023607_p80 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48139 | 48267 |
YP_009009885.1 | NC_023607_p51 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34954 | 36996 |
YP_009009872.1 | NC_023607_p38 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 28399 | 28962 |
YP_009009851.1 | NC_023607_p17 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 12761 | 13585 |
YP_009009895.1 | NC_023607_p61 | endonuclease VII protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40516 | 41010 |
YP_009009844.1 | NC_023607_p10 | hypothetical protein | phrog_2269 | unknown function | unknown function | 1 | 5981 | 6208 |
YP_009009898.1 | NC_023607_p64 | hypothetical protein | phrog_13419 | unknown function | unknown function | -1 | 41922 | 42062 |
YP_009009856.1 | NC_023607_p22 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 15786 | 15977 |
YP_009009865.1 | NC_023607_p31 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 22419 | 24191 |
YP_009009890.1 | NC_023607_p56 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 38193 | 38963 |
YP_009009878.1 | NC_023607_p44 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 30495 | 30725 |
YP_009009917.1 | NC_023607_p83 | hypothetical protein | phrog_363 | DNA methyltransferase | other | -1 | 49076 | 49609 |
YP_009009886.1 | NC_023607_p52 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36996 | 37199 |
YP_009009838.1 | NC_023607_p4 | hypothetical protein | phrog_4347 | unknown function | unknown function | 1 | 2081 | 2299 |
YP_009009870.1 | NC_023607_p36 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 27174 | 27485 |
YP_009009835.1 | NC_023607_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 130 | 288 |
YP_009009915.1 | NC_023607_p81 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 48276 | 48479 |
YP_009009908.1 | NC_023607_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46195 | 46380 |
YP_009009876.1 | NC_023607_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 29822 | 30205 |
YP_009009875.1 | NC_023607_p41 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 29652 | 29813 |
YP_009009923.1 | NC_023607_p89 | hypothetical protein | phrog_1617 | unknown function | unknown function | -1 | 50846 | 51721 |
YP_009009907.1 | NC_023607_p73 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45359 | 45910 |
YP_009009901.1 | NC_023607_p67 | hypothetical protein | phrog_2660 | unknown function | unknown function | -1 | 43121 | 43390 |
YP_009009887.1 | NC_023607_p53 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 37196 | 37369 |
YP_009009912.1 | NC_023607_p78 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47102 | 47860 |
YP_009009849.1 | NC_023607_p15 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 9493 | 11244 |
YP_009009847.1 | NC_023607_p13 | holin | phrog_526 | holin | lysis | 1 | 8077 | 8496 |
YP_009009922.1 | NC_023607_p88 | hypothetical protein | phrog_3831 | unknown function | unknown function | -1 | 50618 | 50824 |
YP_009009862.1 | NC_023607_p28 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 17840 | 18241 |
YP_009009918.1 | NC_023607_p84 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49629 | 50012 |
YP_009009920.1 | NC_023607_p86 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 50289 | 50474 |
YP_009009902.1 | NC_023607_p68 | hypothetical protein | phrog_12205 | unknown function | unknown function | -1 | 43401 | 43526 |
YP_009009900.1 | NC_023607_p66 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42316 | 43059 |
YP_009009896.1 | NC_023607_p62 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 40973 | 41089 |
YP_009009903.1 | NC_023607_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43523 | 43765 |
YP_009009837.1 | NC_023607_p3 | hypothetical protein | phrog_4415 | peptidase | other | 1 | 1491 | 2084 |
YP_009009893.1 | NC_023607_p59 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39528 | 40016 |
YP_009009855.1 | NC_023607_p21 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 15412 | 15789 |
YP_009009913.1 | NC_023607_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47936 | 48139 |