| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023612 |
Definition |
Geobacillus phage GBK2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
39078 |
Host Name |
Geobacillus kaustophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
43.09 |
Number of singletons |
20 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009010531.1 | NC_023612_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38556 | 38738 |
| YP_009010481.1 | NC_023612_p10 | tail protein | phrog_176 | tail terminator | connector | 1 | 7547 | 7954 |
| YP_009010529.1 | NC_023612_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38139 | 38300 |
| YP_009010511.1 | NC_023612_p40 | SSB protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29035 | 29505 |
| YP_009010498.1 | NC_023612_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21234 | 21368 |
| YP_009010473.1 | NC_023612_p2 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 500 | 2041 |
| YP_009010527.1 | NC_023612_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37277 | 37633 |
| YP_009010516.1 | NC_023612_p45 | primase | phrog_16826 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 30825 | 31754 |
| YP_009010478.1 | NC_023612_p7 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 6373 | 6741 |
| YP_009010532.1 | NC_023612_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38833 | 38991 |
| YP_009010475.1 | NC_023612_p4 | prohead protein | phrog_80 | head maturation protease | head and packaging | 1 | 4169 | 4870 |
| YP_009010494.1 | NC_023612_p23 | holin | phrog_263 | holin | lysis | 1 | 19788 | 20027 |
| YP_009010474.1 | NC_023612_p3 | portal protein | phrog_2662 | portal protein | head and packaging | 1 | 2075 | 4132 |
| YP_009010515.1 | NC_023612_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30570 | 30821 |
| YP_009010510.1 | NC_023612_p39 | RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 28179 | 29042 |
| YP_009010505.1 | NC_023612_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26120 | 26374 |
| YP_009010507.1 | NC_023612_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26802 | 26975 |
| YP_009010485.1 | NC_023612_p14 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9168 | 11351 |
| YP_009010520.1 | NC_023612_p49 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 33942 | 34751 |
| YP_009010501.1 | NC_023612_p30 | hypothetical protein | phrog_5422 | unknown function | unknown function | 1 | 22550 | 22891 |
| YP_009010518.1 | NC_023612_p47 | helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 32134 | 33468 |
| YP_009010503.1 | NC_023612_p32 | hypothetical protein | phrog_5156 | unknown function | unknown function | 1 | 23270 | 25840 |
| YP_009010504.1 | NC_023612_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25926 | 26078 |
| YP_009010519.1 | NC_023612_p48 | hypothetical protein | phrog_35666 | unknown function | unknown function | 1 | 33505 | 33945 |
| YP_009010528.1 | NC_023612_p57 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37630 | 38121 |
| YP_009010477.1 | NC_023612_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6131 | 6376 |
| YP_009010495.1 | NC_023612_p24 | hypothetical protein | phrog_24885 | unknown function | unknown function | -1 | 20123 | 20542 |
| YP_009010493.1 | NC_023612_p22 | lysin | phrog_2649 | endolysin | lysis | 1 | 19073 | 19720 |
| YP_009010508.1 | NC_023612_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27013 | 27237 |
| YP_009010482.1 | NC_023612_p11 | hypothetical protein | phrog_1407 | major tail protein | tail | 1 | 7973 | 8383 |
| YP_009010514.1 | NC_023612_p43 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 30350 | 30586 |
| YP_009010486.1 | NC_023612_p15 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 11351 | 12097 |
| YP_009010479.1 | NC_023612_p8 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6746 | 7066 |
| YP_009010487.1 | NC_023612_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12113 | 13171 |
| YP_009010526.1 | NC_023612_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37091 | 37261 |
| YP_009010483.1 | NC_023612_p12 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 8489 | 8875 |
| YP_009010490.1 | NC_023612_p19 | hypothetical protein | phrog_12827 | tail protein | tail | 1 | 14850 | 15704 |
| YP_009010513.1 | NC_023612_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29993 | 30208 |
| YP_009010491.1 | NC_023612_p20 | glycoside hydrolase | phrog_3432 | minor tail protein | tail | 1 | 15701 | 18667 |
| YP_009010533.1 | NC_023612_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38868 | 39068 |
| YP_009010525.1 | NC_023612_p54 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 36692 | 37078 |
| YP_009010524.1 | NC_023612_p53 | hypothetical protein | phrog_23069 | unknown function | unknown function | 1 | 36318 | 36614 |
| YP_009010476.1 | NC_023612_p5 | minor capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4890 | 6065 |
| YP_009010521.1 | NC_023612_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34792 | 35214 |
| YP_009010499.1 | NC_023612_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21355 | 21921 |
| YP_009010530.1 | NC_023612_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38315 | 38566 |
| YP_009010497.1 | NC_023612_p26 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 20993 | 21241 |
| YP_009010489.1 | NC_023612_p18 | hypothetical protein | phrog_3473 | unknown function | unknown function | 1 | 14666 | 14860 |
| YP_009010502.1 | NC_023612_p31 | hypothetical protein | phrog_20592 | unknown function | unknown function | 1 | 22896 | 23258 |
| YP_009010492.1 | NC_023612_p21 | hypothetical protein | phrog_689 | holin | lysis | 1 | 18768 | 19058 |
| YP_009010522.1 | NC_023612_p51 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 35214 | 36083 |
| YP_009010484.1 | NC_023612_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8968 | 9168 |
| YP_009010480.1 | NC_023612_p9 | tail component protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7071 | 7550 |
| YP_009010472.1 | NC_023612_p1 | terminase small subunit | phrog_309 | terminase small subunit | head and packaging | 1 | 1 | 507 |
| YP_009010517.1 | NC_023612_p46 | helicase loader | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31754 | 32134 |
| YP_009010512.1 | NC_023612_p41 | hypothetical protein | phrog_12313 | unknown function | unknown function | 1 | 29566 | 30003 |
| YP_009010506.1 | NC_023612_p35 | hypothetical protein | phrog_3754 | unknown function | unknown function | 1 | 26471 | 26860 |
| YP_009010488.1 | NC_023612_p17 | minor structural protein | phrog_22322 | tail protein | tail | 1 | 13184 | 14653 |
| YP_009010523.1 | NC_023612_p52 | hypothetical protein | phrog_3458 | unknown function | unknown function | 1 | 36127 | 36324 |
| YP_009010496.1 | NC_023612_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20797 | 20991 |
| YP_009010500.1 | NC_023612_p29 | hypothetical protein | phrog_17574 | unknown function | unknown function | 1 | 22109 | 22414 |
| YP_009010509.1 | NC_023612_p38 | recombinase | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27391 | 28182 |