Genomic map of Mycobacterium phage Gadjet (NC_023686)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023686
Definition
Mycobacterium phage Gadjet, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus.
DB of origin
REFSEQ
Length
67949
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
67.48
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009011265.1 NC_023686_p34 hypothetical protein phrog_416 minor tail protein tail 1 32229 33431
YP_009011266.1 NC_023686_p35 hypothetical protein phrog_240 head protein head and packaging 1 33462 33845
YP_009011308.1 NC_023686_p77 hypothetical protein phrog_6229 unknown function unknown function 1 59930 60265
YP_009011284.1 NC_023686_p53 type III restriction helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 45788 47587
YP_009011274.1 NC_023686_p43 hypothetical protein phrog_2804 virion structural protein head and packaging 1 38024 38749
YP_009011290.1 NC_023686_p59 DNA pol I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 52195 54012
YP_009011253.1 NC_023686_p22 major tail subunit phrog_792 major tail protein tail 1 16361 17440
YP_009011324.1 NC_023686_p93 hypothetical protein phrog_6469 unknown function unknown function -1 64381 64803
YP_009011239.1 NC_023686_p8 hypothetical protein phrog_6317 unknown function unknown function -1 4619 4870
YP_009011285.1 NC_023686_p54 hypothetical protein phrog_6400 unknown function unknown function -1 47584 47946
YP_009011264.1 NC_023686_p33 hypothetical protein phrog_356 minor tail protein tail 1 30850 32232
YP_009011321.1 NC_023686_p90 hypothetical protein phrog_6428 unknown function unknown function -1 63613 63825
YP_009011319.1 NC_023686_p88 hypothetical protein phrog_5355 unknown function unknown function -1 62949 63110
YP_009011288.1 NC_023686_p57 RepA phrog_906 DNA polymerase/primase DNA, RNA and nucleotide metabolism -1 48788 51391
YP_009011289.1 NC_023686_p58 hypothetical protein phrog_6342 unknown function unknown function -1 51425 52198
YP_009011246.1 NC_023686_p15 capsid phrog_777 major head protein head and packaging 1 11030 13045
YP_009011242.1 NC_023686_p11 hypothetical protein phrog_781 unknown function unknown function 1 5953 6288
YP_009011306.1 NC_023686_p75 hypothetical protein phrog_1306 unknown function unknown function -1 59578 59748
YP_009011309.1 NC_023686_p78 hypothetical protein phrog_928 unknown function unknown function 1 60247 60774
YP_009011294.1 NC_023686_p63 hypothetical protein phrog_993 unknown function unknown function -1 54861 55340
YP_009011244.1 NC_023686_p13 portal phrog_859 portal protein head and packaging 1 8212 10644
YP_009011232.1 NC_023686_p1 Reg/ParB phrog_723 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 1 693
YP_009011320.1 NC_023686_p89 hypothetical protein phrog_6199 unknown function unknown function -1 63187 63570
YP_009011286.1 NC_023686_p55 hypothetical protein phrog_3892 unknown function unknown function -1 47946 48275
YP_009011301.1 NC_023686_p70 hypothetical protein phrog_6404 unknown function unknown function 1 57861 58091
YP_009011241.1 NC_023686_p10 hypothetical protein phrog_6276 unknown function unknown function -1 5552 5848
YP_009011281.1 NC_023686_p50 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism -1 43275 44888
YP_009011314.1 NC_023686_p83 hypothetical protein phrog_6304 unknown function unknown function -1 61725 61889
YP_009011333.1 NC_023686_p102 hypothetical protein phrog_5930 unknown function unknown function 1 67598 67900
YP_009011240.1 NC_023686_p9 RuvC phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 4867 5418
YP_009011303.1 NC_023686_p72 hypothetical protein phrog_645 Rnase E DNA, RNA and nucleotide metabolism 1 58249 58848
YP_009011233.1 NC_023686_p2 hypothetical protein phrog_6919 unknown function unknown function 1 690 854
YP_009011327.1 NC_023686_p96 hypothetical protein phrog_1221 unknown function unknown function -1 65114 66316
YP_009011237.1 NC_023686_p6 terminase large subunit phrog_38 terminase large subunit head and packaging 1 2696 4471
YP_009011300.1 NC_023686_p69 hypothetical protein phrog_1016 unknown function unknown function 1 57577 57864
YP_009011307.1 NC_023686_p76 hypothetical protein phrog_6511 unknown function unknown function 1 59767 59919
YP_009011263.1 NC_023686_p32 hypothetical protein phrog_746 minor tail protein tail 1 28620 30848
YP_009011304.1 NC_023686_p73 hypothetical protein phrog_1031 unknown function unknown function 1 58853 59302
YP_009011277.1 NC_023686_p46 hypothetical protein phrog_636 unknown function unknown function -1 39520 40218
YP_009011252.1 NC_023686_p21 hypothetical protein phrog_2525 unknown function unknown function 1 15941 16273
YP_009011250.1 NC_023686_p19 hypothetical protein phrog_2272 unknown function unknown function 1 15007 15468
YP_009011276.1 NC_023686_p45 hypothetical protein phrog_955 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 39038 39523
YP_009011292.1 NC_023686_p61 hypothetical protein phrog_6936 unknown function unknown function -1 54284 54421
YP_009011312.1 NC_023686_p81 HNH endo domain phrog_960 HNH endonuclease DNA, RNA and nucleotide metabolism -1 61308 61637
YP_009011283.1 NC_023686_p52 hypothetical protein singleton unknown function unknown function -1 45147 45791
YP_009011278.1 NC_023686_p47 LysA phrog_700 endolysin lysis 1 40269 41546
YP_009011236.1 NC_023686_p5 ParB phrog_2159 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 2148 2717
YP_009011310.1 NC_023686_p79 hypothetical protein phrog_4974 unknown function unknown function -1 60787 60975
YP_009011262.1 NC_023686_p31 hypothetical protein phrog_837 minor tail protein tail 1 27580 28623
YP_009011260.1 NC_023686_p29 tapemeasure protein phrog_934 tail length tape measure protein tail 1 20405 26143
YP_009011245.1 NC_023686_p14 hypothetical protein phrog_2069 unknown function unknown function 1 10644 10850
YP_009011247.1 NC_023686_p16 hypothetical protein phrog_779 unknown function unknown function 1 13144 13953
YP_009011296.1 NC_023686_p65 hypothetical protein phrog_6656 unknown function unknown function -1 55498 55728
YP_009011298.1 NC_023686_p67 hypothetical protein phrog_982 unknown function unknown function -1 56152 56421
YP_009011313.1 NC_023686_p82 hypothetical protein phrog_4461 unknown function unknown function -1 61630 61728
YP_009011326.1 NC_023686_p95 hypothetical protein singleton unknown function unknown function -1 64946 65053
YP_009011258.1 NC_023686_p27 tail assembly chaperone phrog_5 tail completion or Neck1 protein connector 1 19373 19786
YP_009011243.1 NC_023686_p12 hypothetical protein phrog_776 portal protein head and packaging 1 6318 8222
YP_009011305.1 NC_023686_p74 hypothetical protein phrog_4885 unknown function unknown function 1 59308 59565
YP_009011318.1 NC_023686_p87 hypothetical protein phrog_2089 unknown function unknown function -1 62668 62880
YP_009011234.1 NC_023686_p3 hypothetical protein phrog_6307 unknown function unknown function 1 851 1072
YP_009011311.1 NC_023686_p80 hypothetical protein phrog_6691 unknown function unknown function -1 61030 61311
YP_009011273.1 NC_023686_p42 hypothetical protein phrog_892 tail fiber protein tail 1 37614 38024
YP_009011291.1 NC_023686_p60 hypothetical protein phrog_6482 unknown function unknown function -1 54012 54287
YP_009011329.1 NC_023686_p98 hypothetical protein phrog_4825 unknown function unknown function 1 66714 66887
YP_009011275.1 NC_023686_p44 hypothetical protein phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 38805 39041
YP_009011251.1 NC_023686_p20 hypothetical protein phrog_2344 unknown function unknown function 1 15465 15944
YP_009011282.1 NC_023686_p51 hypothetical protein singleton unknown function unknown function -1 44885 45142
YP_009011255.1 NC_023686_p24 hypothetical protein phrog_783 head-tail adaptor connector 1 17743 18483
YP_009011268.1 NC_023686_p37 hypothetical protein phrog_282 unknown function unknown function 1 34290 34943
YP_009011317.1 NC_023686_p86 hypothetical protein phrog_6338 unknown function unknown function -1 62382 62585
YP_009011235.1 NC_023686_p4 QueC phrog_2302 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 1069 2151
YP_009011332.1 NC_023686_p101 hypothetical protein phrog_6432 unknown function unknown function 1 67378 67533
YP_009011330.1 NC_023686_p99 hypothetical protein phrog_5733 unknown function unknown function 1 66900 67154
YP_009011302.1 NC_023686_p71 hypothetical protein phrog_4938 unknown function unknown function 1 58088 58252
YP_009011280.1 NC_023686_p49 hypothetical protein phrog_870 unknown function unknown function -1 42681 43226
YP_009011316.1 NC_023686_p85 hypothetical protein phrog_4392 unknown function unknown function -1 62053 62385
YP_009011254.1 NC_023686_p23 hypothetical protein phrog_6514 unknown function unknown function -1 17502 17612
YP_009011256.1 NC_023686_p25 hypothetical protein phrog_810 unknown function unknown function 1 18480 19004
YP_009011315.1 NC_023686_p84 hypothetical protein phrog_6460 unknown function unknown function -1 61886 62056
YP_009011279.1 NC_023686_p48 LysB phrog_102 endolysin lysis 1 41547 42611
YP_009011248.1 NC_023686_p17 hypothetical protein phrog_970 unknown function unknown function 1 13968 14573
YP_009011293.1 NC_023686_p62 hypothetical protein phrog_3025 unknown function unknown function -1 54418 54864
YP_009011261.1 NC_023686_p30 hypothetical protein phrog_838 unknown function unknown function 1 26153 27583
YP_009011325.1 NC_023686_p94 hypothetical protein singleton unknown function unknown function -1 64800 64889
YP_009011287.1 NC_023686_p56 hypothetical protein phrog_1371 unknown function unknown function -1 48272 48745
YP_009011249.1 NC_023686_p18 hypothetical protein phrog_565 holin lysis 1 14570 15004
YP_009011238.1 NC_023686_p7 hypothetical protein phrog_3693 unknown function unknown function -1 4468 4611
YP_009011323.1 NC_023686_p92 hypothetical protein phrog_6114 unknown function unknown function -1 64205 64384
YP_009011299.1 NC_023686_p68 hypothetical protein phrog_996 unknown function unknown function 1 56813 57580
YP_009011271.1 NC_023686_p40 hypothetical protein phrog_915 unknown function unknown function 1 36908 37276
YP_009011267.1 NC_023686_p36 hypothetical protein phrog_948 unknown function unknown function 1 33854 34279
YP_009011297.1 NC_023686_p66 hypothetical protein phrog_6105 unknown function unknown function -1 55725 56075
YP_009011259.1 NC_023686_p28 tail assembly chaperone phrog_1118 tail assembly chaperone tail 1 19786 20379
YP_009011269.1 NC_023686_p38 hypothetical protein phrog_282 unknown function unknown function 1 34940 35539
YP_009011270.1 NC_023686_p39 hypothetical protein phrog_3329 unknown function unknown function 1 35536 36885
YP_009011295.1 NC_023686_p64 hypothetical protein phrog_6735 unknown function unknown function -1 55340 55477
YP_009011331.1 NC_023686_p100 hypothetical protein phrog_6097 unknown function unknown function 1 67151 67387
YP_009011328.1 NC_023686_p97 hypothetical protein phrog_2972 unknown function unknown function -1 66300 66536
YP_009011257.1 NC_023686_p26 hypothetical protein phrog_901 unknown function unknown function 1 19015 19389
YP_009011272.1 NC_023686_p41 hypothetical protein phrog_941 unknown function unknown function 1 37273 37596
YP_009011322.1 NC_023686_p91 hypothetical protein phrog_5411 HNH endonuclease DNA, RNA and nucleotide metabolism -1 63825 64208