| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023686 |
Definition |
Mycobacterium phage Gadjet, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus. |
DB of origin |
REFSEQ |
Length |
67949 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
67.48 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009011265.1 | NC_023686_p34 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 32229 | 33431 |
| YP_009011266.1 | NC_023686_p35 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 33462 | 33845 |
| YP_009011308.1 | NC_023686_p77 | hypothetical protein | phrog_6229 | unknown function | unknown function | 1 | 59930 | 60265 |
| YP_009011284.1 | NC_023686_p53 | type III restriction helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 45788 | 47587 |
| YP_009011274.1 | NC_023686_p43 | hypothetical protein | phrog_2804 | virion structural protein | head and packaging | 1 | 38024 | 38749 |
| YP_009011290.1 | NC_023686_p59 | DNA pol I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 52195 | 54012 |
| YP_009011253.1 | NC_023686_p22 | major tail subunit | phrog_792 | major tail protein | tail | 1 | 16361 | 17440 |
| YP_009011324.1 | NC_023686_p93 | hypothetical protein | phrog_6469 | unknown function | unknown function | -1 | 64381 | 64803 |
| YP_009011239.1 | NC_023686_p8 | hypothetical protein | phrog_6317 | unknown function | unknown function | -1 | 4619 | 4870 |
| YP_009011285.1 | NC_023686_p54 | hypothetical protein | phrog_6400 | unknown function | unknown function | -1 | 47584 | 47946 |
| YP_009011264.1 | NC_023686_p33 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 30850 | 32232 |
| YP_009011321.1 | NC_023686_p90 | hypothetical protein | phrog_6428 | unknown function | unknown function | -1 | 63613 | 63825 |
| YP_009011319.1 | NC_023686_p88 | hypothetical protein | phrog_5355 | unknown function | unknown function | -1 | 62949 | 63110 |
| YP_009011288.1 | NC_023686_p57 | RepA | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 48788 | 51391 |
| YP_009011289.1 | NC_023686_p58 | hypothetical protein | phrog_6342 | unknown function | unknown function | -1 | 51425 | 52198 |
| YP_009011246.1 | NC_023686_p15 | capsid | phrog_777 | major head protein | head and packaging | 1 | 11030 | 13045 |
| YP_009011242.1 | NC_023686_p11 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 5953 | 6288 |
| YP_009011306.1 | NC_023686_p75 | hypothetical protein | phrog_1306 | unknown function | unknown function | -1 | 59578 | 59748 |
| YP_009011309.1 | NC_023686_p78 | hypothetical protein | phrog_928 | unknown function | unknown function | 1 | 60247 | 60774 |
| YP_009011294.1 | NC_023686_p63 | hypothetical protein | phrog_993 | unknown function | unknown function | -1 | 54861 | 55340 |
| YP_009011244.1 | NC_023686_p13 | portal | phrog_859 | portal protein | head and packaging | 1 | 8212 | 10644 |
| YP_009011232.1 | NC_023686_p1 | Reg/ParB | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 693 |
| YP_009011320.1 | NC_023686_p89 | hypothetical protein | phrog_6199 | unknown function | unknown function | -1 | 63187 | 63570 |
| YP_009011286.1 | NC_023686_p55 | hypothetical protein | phrog_3892 | unknown function | unknown function | -1 | 47946 | 48275 |
| YP_009011301.1 | NC_023686_p70 | hypothetical protein | phrog_6404 | unknown function | unknown function | 1 | 57861 | 58091 |
| YP_009011241.1 | NC_023686_p10 | hypothetical protein | phrog_6276 | unknown function | unknown function | -1 | 5552 | 5848 |
| YP_009011281.1 | NC_023686_p50 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43275 | 44888 |
| YP_009011314.1 | NC_023686_p83 | hypothetical protein | phrog_6304 | unknown function | unknown function | -1 | 61725 | 61889 |
| YP_009011333.1 | NC_023686_p102 | hypothetical protein | phrog_5930 | unknown function | unknown function | 1 | 67598 | 67900 |
| YP_009011240.1 | NC_023686_p9 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 4867 | 5418 |
| YP_009011303.1 | NC_023686_p72 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 58249 | 58848 |
| YP_009011233.1 | NC_023686_p2 | hypothetical protein | phrog_6919 | unknown function | unknown function | 1 | 690 | 854 |
| YP_009011327.1 | NC_023686_p96 | hypothetical protein | phrog_1221 | unknown function | unknown function | -1 | 65114 | 66316 |
| YP_009011237.1 | NC_023686_p6 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 2696 | 4471 |
| YP_009011300.1 | NC_023686_p69 | hypothetical protein | phrog_1016 | unknown function | unknown function | 1 | 57577 | 57864 |
| YP_009011307.1 | NC_023686_p76 | hypothetical protein | phrog_6511 | unknown function | unknown function | 1 | 59767 | 59919 |
| YP_009011263.1 | NC_023686_p32 | hypothetical protein | phrog_746 | minor tail protein | tail | 1 | 28620 | 30848 |
| YP_009011304.1 | NC_023686_p73 | hypothetical protein | phrog_1031 | unknown function | unknown function | 1 | 58853 | 59302 |
| YP_009011277.1 | NC_023686_p46 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 39520 | 40218 |
| YP_009011252.1 | NC_023686_p21 | hypothetical protein | phrog_2525 | unknown function | unknown function | 1 | 15941 | 16273 |
| YP_009011250.1 | NC_023686_p19 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 15007 | 15468 |
| YP_009011276.1 | NC_023686_p45 | hypothetical protein | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39038 | 39523 |
| YP_009011292.1 | NC_023686_p61 | hypothetical protein | phrog_6936 | unknown function | unknown function | -1 | 54284 | 54421 |
| YP_009011312.1 | NC_023686_p81 | HNH endo domain | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 61308 | 61637 |
| YP_009011283.1 | NC_023686_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45147 | 45791 |
| YP_009011278.1 | NC_023686_p47 | LysA | phrog_700 | endolysin | lysis | 1 | 40269 | 41546 |
| YP_009011236.1 | NC_023686_p5 | ParB | phrog_2159 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2148 | 2717 |
| YP_009011310.1 | NC_023686_p79 | hypothetical protein | phrog_4974 | unknown function | unknown function | -1 | 60787 | 60975 |
| YP_009011262.1 | NC_023686_p31 | hypothetical protein | phrog_837 | minor tail protein | tail | 1 | 27580 | 28623 |
| YP_009011260.1 | NC_023686_p29 | tapemeasure protein | phrog_934 | tail length tape measure protein | tail | 1 | 20405 | 26143 |
| YP_009011245.1 | NC_023686_p14 | hypothetical protein | phrog_2069 | unknown function | unknown function | 1 | 10644 | 10850 |
| YP_009011247.1 | NC_023686_p16 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 13144 | 13953 |
| YP_009011296.1 | NC_023686_p65 | hypothetical protein | phrog_6656 | unknown function | unknown function | -1 | 55498 | 55728 |
| YP_009011298.1 | NC_023686_p67 | hypothetical protein | phrog_982 | unknown function | unknown function | -1 | 56152 | 56421 |
| YP_009011313.1 | NC_023686_p82 | hypothetical protein | phrog_4461 | unknown function | unknown function | -1 | 61630 | 61728 |
| YP_009011326.1 | NC_023686_p95 | hypothetical protein | singleton | unknown function | unknown function | -1 | 64946 | 65053 |
| YP_009011258.1 | NC_023686_p27 | tail assembly chaperone | phrog_5 | tail completion or Neck1 protein | connector | 1 | 19373 | 19786 |
| YP_009011243.1 | NC_023686_p12 | hypothetical protein | phrog_776 | portal protein | head and packaging | 1 | 6318 | 8222 |
| YP_009011305.1 | NC_023686_p74 | hypothetical protein | phrog_4885 | unknown function | unknown function | 1 | 59308 | 59565 |
| YP_009011318.1 | NC_023686_p87 | hypothetical protein | phrog_2089 | unknown function | unknown function | -1 | 62668 | 62880 |
| YP_009011234.1 | NC_023686_p3 | hypothetical protein | phrog_6307 | unknown function | unknown function | 1 | 851 | 1072 |
| YP_009011311.1 | NC_023686_p80 | hypothetical protein | phrog_6691 | unknown function | unknown function | -1 | 61030 | 61311 |
| YP_009011273.1 | NC_023686_p42 | hypothetical protein | phrog_892 | tail fiber protein | tail | 1 | 37614 | 38024 |
| YP_009011291.1 | NC_023686_p60 | hypothetical protein | phrog_6482 | unknown function | unknown function | -1 | 54012 | 54287 |
| YP_009011329.1 | NC_023686_p98 | hypothetical protein | phrog_4825 | unknown function | unknown function | 1 | 66714 | 66887 |
| YP_009011275.1 | NC_023686_p44 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 38805 | 39041 |
| YP_009011251.1 | NC_023686_p20 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 15465 | 15944 |
| YP_009011282.1 | NC_023686_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44885 | 45142 |
| YP_009011255.1 | NC_023686_p24 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 17743 | 18483 |
| YP_009011268.1 | NC_023686_p37 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34290 | 34943 |
| YP_009011317.1 | NC_023686_p86 | hypothetical protein | phrog_6338 | unknown function | unknown function | -1 | 62382 | 62585 |
| YP_009011235.1 | NC_023686_p4 | QueC | phrog_2302 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 1069 | 2151 |
| YP_009011332.1 | NC_023686_p101 | hypothetical protein | phrog_6432 | unknown function | unknown function | 1 | 67378 | 67533 |
| YP_009011330.1 | NC_023686_p99 | hypothetical protein | phrog_5733 | unknown function | unknown function | 1 | 66900 | 67154 |
| YP_009011302.1 | NC_023686_p71 | hypothetical protein | phrog_4938 | unknown function | unknown function | 1 | 58088 | 58252 |
| YP_009011280.1 | NC_023686_p49 | hypothetical protein | phrog_870 | unknown function | unknown function | -1 | 42681 | 43226 |
| YP_009011316.1 | NC_023686_p85 | hypothetical protein | phrog_4392 | unknown function | unknown function | -1 | 62053 | 62385 |
| YP_009011254.1 | NC_023686_p23 | hypothetical protein | phrog_6514 | unknown function | unknown function | -1 | 17502 | 17612 |
| YP_009011256.1 | NC_023686_p25 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 18480 | 19004 |
| YP_009011315.1 | NC_023686_p84 | hypothetical protein | phrog_6460 | unknown function | unknown function | -1 | 61886 | 62056 |
| YP_009011279.1 | NC_023686_p48 | LysB | phrog_102 | endolysin | lysis | 1 | 41547 | 42611 |
| YP_009011248.1 | NC_023686_p17 | hypothetical protein | phrog_970 | unknown function | unknown function | 1 | 13968 | 14573 |
| YP_009011293.1 | NC_023686_p62 | hypothetical protein | phrog_3025 | unknown function | unknown function | -1 | 54418 | 54864 |
| YP_009011261.1 | NC_023686_p30 | hypothetical protein | phrog_838 | unknown function | unknown function | 1 | 26153 | 27583 |
| YP_009011325.1 | NC_023686_p94 | hypothetical protein | singleton | unknown function | unknown function | -1 | 64800 | 64889 |
| YP_009011287.1 | NC_023686_p56 | hypothetical protein | phrog_1371 | unknown function | unknown function | -1 | 48272 | 48745 |
| YP_009011249.1 | NC_023686_p18 | hypothetical protein | phrog_565 | holin | lysis | 1 | 14570 | 15004 |
| YP_009011238.1 | NC_023686_p7 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 4468 | 4611 |
| YP_009011323.1 | NC_023686_p92 | hypothetical protein | phrog_6114 | unknown function | unknown function | -1 | 64205 | 64384 |
| YP_009011299.1 | NC_023686_p68 | hypothetical protein | phrog_996 | unknown function | unknown function | 1 | 56813 | 57580 |
| YP_009011271.1 | NC_023686_p40 | hypothetical protein | phrog_915 | unknown function | unknown function | 1 | 36908 | 37276 |
| YP_009011267.1 | NC_023686_p36 | hypothetical protein | phrog_948 | unknown function | unknown function | 1 | 33854 | 34279 |
| YP_009011297.1 | NC_023686_p66 | hypothetical protein | phrog_6105 | unknown function | unknown function | -1 | 55725 | 56075 |
| YP_009011259.1 | NC_023686_p28 | tail assembly chaperone | phrog_1118 | tail assembly chaperone | tail | 1 | 19786 | 20379 |
| YP_009011269.1 | NC_023686_p38 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34940 | 35539 |
| YP_009011270.1 | NC_023686_p39 | hypothetical protein | phrog_3329 | unknown function | unknown function | 1 | 35536 | 36885 |
| YP_009011295.1 | NC_023686_p64 | hypothetical protein | phrog_6735 | unknown function | unknown function | -1 | 55340 | 55477 |
| YP_009011331.1 | NC_023686_p100 | hypothetical protein | phrog_6097 | unknown function | unknown function | 1 | 67151 | 67387 |
| YP_009011328.1 | NC_023686_p97 | hypothetical protein | phrog_2972 | unknown function | unknown function | -1 | 66300 | 66536 |
| YP_009011257.1 | NC_023686_p26 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 19015 | 19389 |
| YP_009011272.1 | NC_023686_p41 | hypothetical protein | phrog_941 | unknown function | unknown function | 1 | 37273 | 37596 |
| YP_009011322.1 | NC_023686_p91 | hypothetical protein | phrog_5411 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 63825 | 64208 |