| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023695 |
Definition |
Mycobacterium phage Violet, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52481 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
63.84 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009012730.1 | NC_023695_p42 | DNA pol I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32752 | 34578 |
| YP_009012765.1 | NC_023695_p77 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48438 | 48566 |
| YP_009012693.1 | NC_023695_p5 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 2907 | 3617 |
| YP_009012762.1 | NC_023695_p74 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47889 | 48089 |
| YP_009012701.1 | NC_023695_p13 | scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 11633 | 12145 |
| YP_009012711.1 | NC_023695_p23 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16915 | 19386 |
| YP_009012778.1 | NC_023695_p90 | hypothetical protein | phrog_15028 | unknown function | unknown function | 1 | 51803 | 52384 |
| YP_009012691.1 | NC_023695_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1079 | 1519 |
| YP_009012770.1 | NC_023695_p82 | hypothetical protein | phrog_6842 | unknown function | unknown function | -1 | 49893 | 50228 |
| YP_009012746.1 | NC_023695_p58 | Endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 42059 | 42553 |
| YP_009012705.1 | NC_023695_p17 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13915 | 14277 |
| YP_009012745.1 | NC_023695_p57 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 40485 | 42062 |
| YP_009012715.1 | NC_023695_p27 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23486 | 23932 |
| YP_009012772.1 | NC_023695_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50375 | 50500 |
| YP_009012742.1 | NC_023695_p54 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39676 | 40191 |
| YP_009012726.1 | NC_023695_p38 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31829 | 32008 |
| YP_009012713.1 | NC_023695_p25 | minor tail subunit | phrog_1543 | minor tail protein | tail | 1 | 21464 | 21646 |
| YP_009012712.1 | NC_023695_p24 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 19410 | 21467 |
| YP_009012775.1 | NC_023695_p87 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 50920 | 51123 |
| YP_009012720.1 | NC_023695_p32 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27984 | 28385 |
| YP_009012755.1 | NC_023695_p67 | hypothetical protein | phrog_1311 | unknown function | unknown function | -1 | 45495 | 45632 |
| YP_009012774.1 | NC_023695_p86 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 50729 | 50848 |
| YP_009012692.1 | NC_023695_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 1827 | 2897 |
| YP_009012710.1 | NC_023695_p22 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16104 | 16481 |
| YP_009012743.1 | NC_023695_p55 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40170 | 40328 |
| YP_009012729.1 | NC_023695_p41 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32372 | 32731 |
| YP_009012694.1 | NC_023695_p6 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3631 | 3891 |
| YP_009012759.1 | NC_023695_p71 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47148 | 47447 |
| YP_009012735.1 | NC_023695_p47 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35768 | 36559 |
| YP_009012739.1 | NC_023695_p51 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38588 | 38989 |
| YP_009012698.1 | NC_023695_p10 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6546 | 9257 |
| YP_009012714.1 | NC_023695_p26 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 21646 | 23448 |
| YP_009012704.1 | NC_023695_p16 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13466 | 13915 |
| YP_009012753.1 | NC_023695_p65 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44475 | 44657 |
| YP_009012709.1 | NC_023695_p21 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16104 | 16903 |
| YP_009012724.1 | NC_023695_p36 | integrase | phrog_95 | integrase | integration and excision | 1 | 29937 | 31439 |
| YP_009012777.1 | NC_023695_p89 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 51521 | 51709 |
| YP_009012731.1 | NC_023695_p43 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 34601 | 34843 |
| YP_009012756.1 | NC_023695_p68 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 45632 | 45940 |
| YP_009012737.1 | NC_023695_p49 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36697 | 38415 |
| YP_009012708.1 | NC_023695_p20 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15131 | 15982 |
| YP_009012749.1 | NC_023695_p61 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42922 | 43731 |
| YP_009012697.1 | NC_023695_p9 | lysin B | phrog_102 | endolysin | lysis | 1 | 5558 | 6526 |
| YP_009012700.1 | NC_023695_p12 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10693 | 11574 |
| YP_009012719.1 | NC_023695_p31 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26491 | 27975 |
| YP_009012703.1 | NC_023695_p15 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13239 | 13466 |
| YP_009012702.1 | NC_023695_p14 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 12156 | 13160 |
| YP_009012736.1 | NC_023695_p48 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36552 | 36692 |
| YP_009012716.1 | NC_023695_p28 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23929 | 24276 |
| YP_009012773.1 | NC_023695_p85 | hypothetical protein | phrog_10288 | unknown function | unknown function | -1 | 50461 | 50700 |
| YP_009012764.1 | NC_023695_p76 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48274 | 48441 |
| YP_009012727.1 | NC_023695_p39 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31996 | 32091 |
| YP_009012752.1 | NC_023695_p64 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44151 | 44471 |
| YP_009012699.1 | NC_023695_p11 | portal | phrog_104 | portal protein | head and packaging | 1 | 9254 | 10696 |
| YP_009012748.1 | NC_023695_p60 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42656 | 42922 |
| YP_009012696.1 | NC_023695_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4156 | 5568 |
| YP_009012758.1 | NC_023695_p70 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46374 | 46886 |
| YP_009012706.1 | NC_023695_p18 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14277 | 14672 |
| YP_009012734.1 | NC_023695_p46 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35589 | 35771 |
| YP_009012776.1 | NC_023695_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51120 | 51317 |
| YP_009012741.1 | NC_023695_p53 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39309 | 39887 |
| YP_009012740.1 | NC_023695_p52 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 38986 | 39312 |
| YP_009012744.1 | NC_023695_p56 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40325 | 40459 |
| YP_009012723.1 | NC_023695_p35 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29494 | 29790 |
| YP_009012769.1 | NC_023695_p81 | hypothetical protein | phrog_26173 | unknown function | unknown function | -1 | 49588 | 49932 |
| YP_009012728.1 | NC_023695_p40 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32088 | 32375 |
| YP_009012768.1 | NC_023695_p80 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 49276 | 49431 |
| YP_009012754.1 | NC_023695_p66 | RecB-like | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44684 | 45502 |
| YP_009012751.1 | NC_023695_p63 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43861 | 44154 |
| YP_009012750.1 | NC_023695_p62 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43718 | 43864 |
| YP_009012761.1 | NC_023695_p73 | hypothetical protein | phrog_6510 | unknown function | unknown function | -1 | 47710 | 47892 |
| YP_009012707.1 | NC_023695_p19 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14676 | 15122 |
| YP_009012690.1 | NC_023695_p2 | HNH endonuclease domain | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 748 | 1044 |
| YP_009012689.1 | NC_023695_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 599 | 751 |
| YP_009012733.1 | NC_023695_p45 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35101 | 35592 |
| YP_009012732.1 | NC_023695_p44 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34840 | 35070 |
| YP_009012747.1 | NC_023695_p59 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42540 | 42659 |
| YP_009012757.1 | NC_023695_p69 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45937 | 46332 |
| YP_009012721.1 | NC_023695_p33 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28394 | 28585 |
| YP_009012695.1 | NC_023695_p7 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 3899 | 4156 |
| YP_009012722.1 | NC_023695_p34 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28585 | 29373 |
| YP_009012763.1 | NC_023695_p75 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48086 | 48274 |
| YP_009012760.1 | NC_023695_p72 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47444 | 47713 |
| YP_009012767.1 | NC_023695_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49097 | 49231 |
| YP_009012718.1 | NC_023695_p30 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 24645 | 26498 |
| YP_009012717.1 | NC_023695_p29 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24273 | 24620 |
| YP_009012725.1 | NC_023695_p37 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31560 | 31832 |
| YP_009012738.1 | NC_023695_p50 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38412 | 38591 |
| YP_009012771.1 | NC_023695_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50254 | 50394 |
| YP_009012766.1 | NC_023695_p78 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48587 | 48736 |