| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023698 |
Definition |
Mycobacterium phage Avani, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
54470 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
107 |
%GC |
60.97 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009013178.1 | NC_023698_p83 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 45436 | 45696 |
| YP_009013114.1 | NC_023698_p19 | minor tail | phrog_110 | minor tail protein | tail | 1 | 13744 | 15408 |
| YP_009013149.1 | NC_023698_p54 | HTH DNA binding ( Cro) | phrog_3642 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34894 | 35139 |
| YP_009013197.1 | NC_023698_p102 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 50962 | 51120 |
| YP_009013110.1 | NC_023698_p15 | tail assembly chaperone | phrog_21995 | tail assembly chaperone | tail | 1 | 8371 | 9272 |
| YP_009013154.1 | NC_023698_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36848 | 37396 |
| YP_009013119.1 | NC_023698_p24 | minor tail | phrog_346 | minor tail protein | tail | 1 | 17093 | 19642 |
| YP_009013147.1 | NC_023698_p52 | hypothetical protein | phrog_7613 | unknown function | unknown function | -1 | 34019 | 34165 |
| YP_009013127.1 | NC_023698_p32 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 24801 | 24938 |
| YP_009013115.1 | NC_023698_p20 | minor tail | phrog_8122 | minor tail protein | tail | 1 | 15408 | 15773 |
| YP_009013177.1 | NC_023698_p82 | hypothetical protein | phrog_29781 | unknown function | unknown function | 1 | 45206 | 45439 |
| YP_009013136.1 | NC_023698_p41 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | -1 | 29495 | 29893 |
| YP_009013157.1 | NC_023698_p62 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 38318 | 38998 |
| YP_009013192.1 | NC_023698_p97 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 48825 | 49061 |
| YP_009013128.1 | NC_023698_p33 | hypothetical protein | phrog_19498 | unknown function | unknown function | 1 | 25007 | 25147 |
| YP_009013139.1 | NC_023698_p44 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 30288 | 30455 |
| YP_009013131.1 | NC_023698_p36 | LysB | phrog_102 | endolysin | lysis | 1 | 26807 | 27880 |
| YP_009013122.1 | NC_023698_p27 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 23475 | 23906 |
| YP_009013198.1 | NC_023698_p103 | transcriptional regulator (AlpA-like) | phrog_3813 | unknown function | unknown function | 1 | 51117 | 51374 |
| YP_009013193.1 | NC_023698_p98 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 49054 | 49323 |
| YP_009013112.1 | NC_023698_p17 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 9265 | 12816 |
| YP_009013183.1 | NC_023698_p88 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 46792 | 47127 |
| YP_009013181.1 | NC_023698_p86 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 46087 | 46437 |
| YP_009013124.1 | NC_023698_p29 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 24218 | 24514 |
| YP_009013132.1 | NC_023698_p37 | holin | phrog_443 | holin | lysis | 1 | 28000 | 28257 |
| YP_009013152.1 | NC_023698_p57 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36353 | 36568 |
| YP_009013129.1 | NC_023698_p34 | hypothetical protein | phrog_3888 | unknown function | unknown function | 1 | 25152 | 25445 |
| YP_009013186.1 | NC_023698_p91 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 47610 | 47966 |
| YP_009013099.1 | NC_023698_p4 | portal | phrog_104 | portal protein | head and packaging | 1 | 2180 | 3604 |
| YP_009013146.1 | NC_023698_p51 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33453 | 33905 |
| YP_009013135.1 | NC_023698_p40 | hypothetical protein | phrog_3798 | unknown function | unknown function | 1 | 28789 | 29178 |
| YP_009013137.1 | NC_023698_p42 | hypothetical protein | phrog_7480 | unknown function | unknown function | -1 | 29963 | 30169 |
| YP_009013108.1 | NC_023698_p13 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 7213 | 7617 |
| YP_009013118.1 | NC_023698_p23 | minor tail | phrog_18521 | minor tail protein | tail | 1 | 16395 | 17096 |
| YP_009013134.1 | NC_023698_p39 | hypothetical protein | phrog_6071 | unknown function | unknown function | 1 | 28553 | 28789 |
| YP_009013158.1 | NC_023698_p63 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 39078 | 39377 |
| YP_009013103.1 | NC_023698_p8 | hypothetical protein | phrog_14967 | unknown function | unknown function | 1 | 5825 | 5968 |
| YP_009013100.1 | NC_023698_p5 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3585 | 4229 |
| YP_009013111.1 | NC_023698_p16 | tail assembly chaperone | phrog_16781 | tail assembly chaperone | tail | 1 | 8371 | 8982 |
| YP_009013194.1 | NC_023698_p99 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 49320 | 50006 |
| YP_009013166.1 | NC_023698_p71 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 41759 | 42094 |
| YP_009013096.1 | NC_023698_p1 | HNH endonuclease domain | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38 | 370 |
| YP_009013107.1 | NC_023698_p12 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6948 | 7220 |
| YP_009013161.1 | NC_023698_p66 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 40258 | 40743 |
| YP_009013164.1 | NC_023698_p69 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 41380 | 41532 |
| YP_009013188.1 | NC_023698_p93 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 48223 | 48402 |
| YP_009013106.1 | NC_023698_p11 | hypothetical protein | phrog_16796 | unknown function | unknown function | 1 | 6788 | 6964 |
| YP_009013202.1 | NC_023698_p107 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53751 | 54359 |
| YP_009013141.1 | NC_023698_p46 | hypothetical protein | phrog_22001 | unknown function | unknown function | -1 | 30688 | 30879 |
| YP_009013195.1 | NC_023698_p100 | hypothetical protein | phrog_8604 | unknown function | unknown function | 1 | 50003 | 50605 |
| YP_009013138.1 | NC_023698_p43 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 30166 | 30288 |
| YP_009013133.1 | NC_023698_p38 | hypothetical protein | phrog_4511 | unknown function | unknown function | 1 | 28254 | 28553 |
| YP_009013116.1 | NC_023698_p21 | minor tail | phrog_17043 | minor tail protein | tail | 1 | 15770 | 16093 |
| YP_009013150.1 | NC_023698_p55 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35200 | 36060 |
| YP_009013185.1 | NC_023698_p90 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 47333 | 47617 |
| YP_009013153.1 | NC_023698_p58 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36654 | 36851 |
| YP_009013140.1 | NC_023698_p45 | hypothetical protein | phrog_5648 | unknown function | unknown function | -1 | 30455 | 30691 |
| YP_009013174.1 | NC_023698_p79 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44144 | 44293 |
| YP_009013168.1 | NC_023698_p73 | HNH endonuclease domain | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42666 | 43022 |
| YP_009013098.1 | NC_023698_p3 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 663 | 2183 |
| YP_009013101.1 | NC_023698_p6 | scaffolding | phrog_3760 | head scaffolding protein | head and packaging | 1 | 4307 | 4855 |
| YP_009013130.1 | NC_023698_p35 | LysA | phrog_700 | endolysin | lysis | 1 | 25446 | 26810 |
| YP_009013187.1 | NC_023698_p92 | hypothetical protein | phrog_3472 | unknown function | unknown function | 1 | 47963 | 48226 |
| YP_009013163.1 | NC_023698_p68 | HTH DNA binding | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41015 | 41380 |
| YP_009013097.1 | NC_023698_p2 | terminase, small subunit | phrog_4479 | terminase small subunit | head and packaging | 1 | 437 | 691 |
| YP_009013143.1 | NC_023698_p48 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31400 | 31594 |
| YP_009013167.1 | NC_023698_p72 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 42091 | 42669 |
| YP_009013175.1 | NC_023698_p80 | GIY-YIG endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44294 | 44848 |
| YP_009013159.1 | NC_023698_p64 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 39374 | 39766 |
| YP_009013182.1 | NC_023698_p87 | HIT family hydrolase | phrog_3962 | unknown function | unknown function | 1 | 46430 | 46795 |
| YP_009013176.1 | NC_023698_p81 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 44848 | 45222 |
| YP_009013121.1 | NC_023698_p26 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 22464 | 23408 |
| YP_009013162.1 | NC_023698_p67 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 40740 | 41018 |
| YP_009013102.1 | NC_023698_p7 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 4878 | 5813 |
| YP_009013105.1 | NC_023698_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6438 | 6791 |
| YP_009013201.1 | NC_023698_p106 | galactosyl transferase | phrog_1721 | galactosyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 53056 | 53754 |
| YP_009013170.1 | NC_023698_p75 | methylase | phrog_67 | DNA methyltransferase | other | 1 | 43135 | 43713 |
| YP_009013191.1 | NC_023698_p96 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 48706 | 48828 |
| YP_009013109.1 | NC_023698_p14 | major tail | phrog_117 | major tail protein | tail | 1 | 7679 | 8272 |
| YP_009013142.1 | NC_023698_p47 | hypothetical protein | phrog_16880 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 30876 | 31403 |
| YP_009013179.1 | NC_023698_p84 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 45696 | 45899 |
| YP_009013104.1 | NC_023698_p9 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 5986 | 6441 |
| YP_009013184.1 | NC_023698_p89 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 47124 | 47336 |
| YP_009013173.1 | NC_023698_p78 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 43995 | 44147 |
| YP_009013145.1 | NC_023698_p50 | integrase, Y-Int | phrog_1 | integrase | integration and excision | 1 | 32075 | 33376 |
| YP_009013151.1 | NC_023698_p56 | hypothetical protein | phrog_5253 | unknown function | unknown function | 1 | 36057 | 36356 |
| YP_009013120.1 | NC_023698_p25 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19639 | 22464 |
| YP_009013171.1 | NC_023698_p76 | hypothetical protein | phrog_6573 | unknown function | unknown function | 1 | 43751 | 43852 |
| YP_009013172.1 | NC_023698_p77 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 43852 | 43998 |
| YP_009013200.1 | NC_023698_p105 | glycosyl transferase/methyl transferase | phrog_8858 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 51893 | 53059 |
| YP_009013156.1 | NC_023698_p61 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 37581 | 38282 |
| YP_009013189.1 | NC_023698_p94 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 48402 | 48539 |
| YP_009013117.1 | NC_023698_p22 | minor tail | phrog_17345 | minor tail protein | tail | 1 | 16090 | 16398 |
| YP_009013125.1 | NC_023698_p30 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 24521 | 24667 |
| YP_009013126.1 | NC_023698_p31 | hypothetical protein | phrog_13008 | unknown function | unknown function | 1 | 24664 | 24804 |
| YP_009013148.1 | NC_023698_p53 | immunity repressor | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 34168 | 34662 |
| YP_009013165.1 | NC_023698_p70 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 41532 | 41762 |
| YP_009013199.1 | NC_023698_p104 | hypothetical protein | phrog_17545 | unknown function | unknown function | -1 | 51371 | 51841 |
| YP_009013123.1 | NC_023698_p28 | transcriptional regulator (AlpA-like) | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23903 | 24082 |
| YP_009013155.1 | NC_023698_p60 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37393 | 37584 |
| YP_009013169.1 | NC_023698_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43019 | 43138 |
| YP_009013113.1 | NC_023698_p18 | minor tail | phrog_106 | minor tail protein | tail | 1 | 12813 | 13742 |
| YP_009013144.1 | NC_023698_p49 | hypothetical protein | phrog_10321 | unknown function | unknown function | -1 | 31664 | 31816 |
| YP_009013196.1 | NC_023698_p101 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 50792 | 50956 |
| YP_009013160.1 | NC_023698_p65 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 39767 | 40261 |
| YP_009013180.1 | NC_023698_p85 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 45896 | 46090 |
| YP_009013190.1 | NC_023698_p95 | hypothetical protein | phrog_9881 | unknown function | unknown function | 1 | 48539 | 48709 |