| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023699 |
Definition |
Mycobacterium phage SG4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
59016 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
105 |
%GC |
61.87 |
Number of singletons |
1 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009013286.1 | NC_023699_p84 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 50324 | 50698 |
| YP_009013234.1 | NC_023699_p32 | LysB | phrog_102 | endolysin | lysis | 1 | 28164 | 29234 |
| YP_009013222.1 | NC_023699_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21965 | 23131 |
| YP_009013289.1 | NC_023699_p87 | hypothetical protein | phrog_13181 | unknown function | unknown function | 1 | 51248 | 51451 |
| YP_009013260.1 | NC_023699_p58 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40086 | 40241 |
| YP_009013221.1 | NC_023699_p19 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 20082 | 21968 |
| YP_009013245.1 | NC_023699_p43 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33460 | 33912 |
| YP_009013276.1 | NC_023699_p74 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 46723 | 46926 |
| YP_009013232.1 | NC_023699_p30 | LysA | phrog_700 | endolysin | lysis | 1 | 26651 | 27922 |
| YP_009013272.1 | NC_023699_p70 | hypothetical protein | phrog_67 | DNA methyltransferase | other | 1 | 43702 | 45480 |
| YP_009013299.1 | NC_023699_p97 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 54587 | 54745 |
| YP_009013263.1 | NC_023699_p61 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40725 | 41303 |
| YP_009013240.1 | NC_023699_p38 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 31042 | 31260 |
| YP_009013296.1 | NC_023699_p94 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 52945 | 53631 |
| YP_009013251.1 | NC_023699_p49 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 36037 | 36267 |
| YP_009013302.1 | NC_023699_p100 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 55394 | 55636 |
| YP_009013273.1 | NC_023699_p71 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 45477 | 45611 |
| YP_009013242.1 | NC_023699_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 31653 | 32771 |
| YP_009013258.1 | NC_023699_p56 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39440 | 39724 |
| YP_009013215.1 | NC_023699_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8576 | 9127 |
| YP_009013211.1 | NC_023699_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6781 | 7110 |
| YP_009013213.1 | NC_023699_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7559 | 8440 |
| YP_009013293.1 | NC_023699_p91 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52200 | 52337 |
| YP_009013225.1 | NC_023699_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23780 | 24418 |
| YP_009013264.1 | NC_023699_p62 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41300 | 41665 |
| YP_009013228.1 | NC_023699_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25747 | 26031 |
| YP_009013220.1 | NC_023699_p18 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 17548 | 20085 |
| YP_009013255.1 | NC_023699_p53 | Hyp | phrog_658 | unknown function | unknown function | 1 | 38120 | 38467 |
| YP_009013282.1 | NC_023699_p80 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 49214 | 49456 |
| YP_009013241.1 | NC_023699_p39 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 31253 | 31345 |
| YP_009013288.1 | NC_023699_p86 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 50874 | 51251 |
| YP_009013243.1 | NC_023699_p41 | hypothetical protein | phrog_1213 | RelE-like toxin | moron, auxiliary metabolic gene and host takeover | 1 | 32893 | 33204 |
| YP_009013237.1 | NC_023699_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29910 | 30143 |
| YP_009013235.1 | NC_023699_p33 | holin | phrog_443 | holin | lysis | 1 | 29281 | 29514 |
| YP_009013278.1 | NC_023699_p76 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 47114 | 47569 |
| YP_009013284.1 | NC_023699_p82 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 49730 | 49978 |
| YP_009013295.1 | NC_023699_p93 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 52679 | 52948 |
| YP_009013259.1 | NC_023699_p57 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39721 | 40086 |
| YP_009013219.1 | NC_023699_p17 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 16703 | 17551 |
| YP_009013208.1 | NC_023699_p6 | capsid | phrog_267 | major head protein | head and packaging | 1 | 5062 | 5883 |
| YP_009013279.1 | NC_023699_p77 | hypothetical protein | phrog_67 | DNA methyltransferase | other | 1 | 47569 | 48366 |
| YP_009013217.1 | NC_023699_p15 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 13178 | 14887 |
| YP_009013253.1 | NC_023699_p51 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 36961 | 37761 |
| YP_009013254.1 | NC_023699_p52 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 37842 | 38123 |
| YP_009013275.1 | NC_023699_p73 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46463 | 46726 |
| YP_009013300.1 | NC_023699_p98 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 54742 | 54999 |
| YP_009013233.1 | NC_023699_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27919 | 28167 |
| YP_009013265.1 | NC_023699_p63 | hypothetical protein | phrog_6573 | unknown function | unknown function | 1 | 41662 | 41766 |
| YP_009013256.1 | NC_023699_p54 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 38464 | 38961 |
| YP_009013246.1 | NC_023699_p44 | hypothetical protein | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 34228 | 34827 |
| YP_009013236.1 | NC_023699_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29511 | 29885 |
| YP_009013247.1 | NC_023699_p45 | DNA-binding protein | phrog_2104 | unknown function | unknown function | 1 | 34904 | 35197 |
| YP_009013239.1 | NC_023699_p37 | hypothetical protein | phrog_8186 | unknown function | unknown function | 1 | 30948 | 31052 |
| YP_009013277.1 | NC_023699_p75 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 46923 | 47117 |
| YP_009013227.1 | NC_023699_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25401 | 25598 |
| YP_009013262.1 | NC_023699_p60 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 40468 | 40728 |
| YP_009013298.1 | NC_023699_p96 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 54417 | 54581 |
| YP_009013205.1 | NC_023699_p3 | portal | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_009013203.1 | NC_023699_p1 | small terminase | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009013244.1 | NC_023699_p42 | hypothetical protein | phrog_2268 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | 1 | 33201 | 33449 |
| YP_009013274.1 | NC_023699_p72 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45615 | 46466 |
| YP_009013238.1 | NC_023699_p36 | DnaQ-like | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 30130 | 30951 |
| YP_009013248.1 | NC_023699_p46 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35255 | 35542 |
| YP_009013230.1 | NC_023699_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26181 | 26348 |
| YP_009013252.1 | NC_023699_p50 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36264 | 36926 |
| YP_009013285.1 | NC_023699_p83 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 50085 | 50327 |
| YP_009013294.1 | NC_023699_p92 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52390 | 52686 |
| YP_009013287.1 | NC_023699_p85 | hypothetical protein | phrog_15080 | unknown function | unknown function | 1 | 50695 | 50877 |
| YP_009013305.1 | NC_023699_p103 | Ser/Thr kinase | phrog_3297 | kinase | other | 1 | 57246 | 57719 |
| YP_009013307.1 | NC_023699_p105 | N-acetylglucosaminyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57925 | 58548 |
| YP_009013209.1 | NC_023699_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5883 | 6449 |
| YP_009013250.1 | NC_023699_p48 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 35891 | 36040 |
| YP_009013266.1 | NC_023699_p64 | DNA-cytosine methyltransferase | phrog_363 | DNA methyltransferase | other | 1 | 41908 | 42666 |
| YP_009013290.1 | NC_023699_p88 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51448 | 51639 |
| YP_009013214.1 | NC_023699_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8576 | 9512 |
| YP_009013249.1 | NC_023699_p47 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 35631 | 35894 |
| YP_009013212.1 | NC_023699_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7097 | 7504 |
| YP_009013218.1 | NC_023699_p16 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 14957 | 16666 |
| YP_009013271.1 | NC_023699_p69 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 43478 | 43705 |
| YP_009013303.1 | NC_023699_p101 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 55629 | 55790 |
| YP_009013301.1 | NC_023699_p99 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 54996 | 55397 |
| YP_009013231.1 | NC_023699_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26379 | 26654 |
| YP_009013224.1 | NC_023699_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23513 | 23767 |
| YP_009013207.1 | NC_023699_p5 | scaffold | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4393 | 5043 |
| YP_009013261.1 | NC_023699_p59 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40241 | 40471 |
| YP_009013269.1 | NC_023699_p67 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 42950 | 43300 |
| YP_009013281.1 | NC_023699_p79 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 48739 | 49107 |
| YP_009013204.1 | NC_023699_p2 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_009013223.1 | NC_023699_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23149 | 23490 |
| YP_009013283.1 | NC_023699_p81 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 49453 | 49737 |
| YP_009013291.1 | NC_023699_p89 | hypothetical protein | phrog_12283 | unknown function | unknown function | 1 | 51636 | 51989 |
| YP_009013304.1 | NC_023699_p102 | polypeptide N-acetylgalactos-aminyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55807 | 57243 |
| YP_009013268.1 | NC_023699_p66 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 42817 | 42957 |
| YP_009013267.1 | NC_023699_p65 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 42663 | 42824 |
| YP_009013306.1 | NC_023699_p104 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57722 | 57928 |
| YP_009013297.1 | NC_023699_p95 | hypothetical protein | phrog_8604 | unknown function | unknown function | 1 | 53628 | 54230 |
| YP_009013280.1 | NC_023699_p78 | hypothetical protein | phrog_3962 | unknown function | unknown function | 1 | 48359 | 48742 |
| YP_009013292.1 | NC_023699_p90 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51986 | 52195 |
| YP_009013210.1 | NC_023699_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6446 | 6778 |
| YP_009013229.1 | NC_023699_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 26038 | 26184 |
| YP_009013206.1 | NC_023699_p4 | protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_009013226.1 | NC_023699_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24415 | 25395 |
| YP_009013270.1 | NC_023699_p68 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 43359 | 43481 |
| YP_009013257.1 | NC_023699_p55 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 38958 | 39443 |
| YP_009013216.1 | NC_023699_p14 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9530 | 13177 |