Genomic map of Pseudomonas virus PA1KOR (NC_023700)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023700
Definition
Pseudomonas phage PA1/KOR/2010, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus.
DB of origin
REFSEQ
Length
34553
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
64.76
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009013325.1 NC_023700_p18 hypothetical protein phrog_4057 unknown function unknown function 1 8681 8923
YP_009013324.1 NC_023700_p17 structural protein phrog_873 endolysin head and packaging 1 8265 8681
YP_009013342.1 NC_023700_p35 hypothetical protein phrog_195 head-tail adaptor connector 1 19618 20034
YP_009013312.1 NC_023700_p5 hypothetical protein phrog_2043 unknown function unknown function 1 3912 4205
YP_009013351.1 NC_023700_p44 hypothetical protein phrog_1082 tail assembly protein tail 1 27548 29251
YP_009013310.1 NC_023700_p3 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 2770 3417
YP_009013338.1 NC_023700_p31 hypothetical protein phrog_1731 virion structural protein head and packaging 1 17735 18133
YP_009013308.1 NC_023700_p1 transposase A phrog_310 transposase integration and excision 1 132 2006
YP_009013332.1 NC_023700_p25 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 14785 15252
YP_009013315.1 NC_023700_p8 hypothetical protein phrog_4367 unknown function unknown function 1 5121 5429
YP_009013323.1 NC_023700_p16 hypothetical protein phrog_1024 unknown function unknown function 1 7843 8265
YP_009013350.1 NC_023700_p43 hypothetical protein phrog_687 structural protein head and packaging 1 26625 27548
YP_009013311.1 NC_023700_p4 hypothetical protein phrog_2119 unknown function unknown function 1 3518 3931
YP_009013336.1 NC_023700_p29 hypothetical protein phrog_3865 unknown function unknown function 1 16178 16399
YP_009013326.1 NC_023700_p19 hypothetical protein phrog_2975 Rz-like spanin lysis 1 8920 9321
YP_009013358.1 NC_023700_p51 hypothetical protein phrog_2623 unknown function unknown function 1 34239 34463
YP_009013357.1 NC_023700_p50 hypothetical protein phrog_2432 unknown function unknown function 1 33891 34160
YP_009013346.1 NC_023700_p39 hypothetical protein phrog_1442 tail assembly chaperone tail 1 21484 21969
YP_009013327.1 NC_023700_p20 hypothetical protein phrog_1103 unknown function unknown function 1 9432 9620
YP_009013344.1 NC_023700_p37 hypothetical protein phrog_3129 unknown function unknown function 1 20498 20677
YP_009013322.1 NC_023700_p15 hypothetical protein phrog_3648 unknown function unknown function 1 7503 7850
YP_009013341.1 NC_023700_p34 hypothetical protein phrog_3376 unknown function unknown function 1 19418 19621
YP_009013309.1 NC_023700_p2 DNA transposition protein phrog_296 DNA transposition protein integration and excision 1 2003 2773
YP_009013328.1 NC_023700_p21 hypothetical protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 9629 10129
YP_009013353.1 NC_023700_p46 hypothetical protein phrog_1180 tail assembly chaperone tail 1 30071 30310
YP_009013355.1 NC_023700_p48 hypothetical protein phrog_1101 tail protein tail 1 30515 32722
YP_009013343.1 NC_023700_p36 hypothetical protein phrog_209 portal protein head and packaging 1 20031 20510
YP_009013340.1 NC_023700_p33 hypothetical protein phrog_7976 unknown function unknown function 1 19081 19383
YP_009013349.1 NC_023700_p42 hypothetical protein phrog_687 structural protein head and packaging 1 25667 26623
YP_009013329.1 NC_023700_p22 hypothetical protein phrog_38 terminase large subunit head and packaging 1 10126 11901
YP_009013335.1 NC_023700_p28 hypothetical protein phrog_26475 unknown function unknown function 1 15966 16181
YP_009013321.1 NC_023700_p14 integral membrane protein phrog_836 late transcriptional activator transcription regulation 1 6966 7400
YP_009013320.1 NC_023700_p13 hypothetical protein phrog_286 unknown function unknown function 1 6557 6964
YP_009013331.1 NC_023700_p24 virion morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 13499 14785
YP_009013313.1 NC_023700_p6 hypothetical protein phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 4222 4740
YP_009013348.1 NC_023700_p41 tail component protein phrog_24 tail length tape measure protein tail 1 22094 25660
YP_009013356.1 NC_023700_p49 hypothetical protein phrog_2875 virion structural protein head and packaging 1 32731 33870
YP_009013333.1 NC_023700_p26 hypothetical protein phrog_17406 unknown function unknown function 1 15365 15529
YP_009013318.1 NC_023700_p11 hypothetical protein phrog_3652 unknown function unknown function 1 5924 6193
YP_009013314.1 NC_023700_p7 host nuclease inhibitor protein phrog_6755 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 4742 5119
YP_009013317.1 NC_023700_p10 hypothetical protein phrog_3223 unknown function unknown function 1 5715 5921
YP_009013334.1 NC_023700_p27 hypothetical protein singleton unknown function unknown function 1 15703 15945
YP_009013337.1 NC_023700_p30 protease (I) and scaffold (Z) proteins phrog_328 head maturation protease head and packaging 1 16619 17725
YP_009013347.1 NC_023700_p40 hypothetical protein gpGT phrog_10839 unknown function unknown function 1 21969 22097
YP_009013354.1 NC_023700_p47 hypothetical protein phrog_1196 tail assembly chaperone tail 1 30307 30525
YP_009013330.1 NC_023700_p23 portal protein phrog_113 portal protein head and packaging 1 11913 13499
YP_009013339.1 NC_023700_p32 major head subunit protein phrog_371 major head protein head and packaging 1 18161 19069
YP_009013345.1 NC_023700_p38 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 20710 21480
YP_009013319.1 NC_023700_p12 hypothetical protein phrog_4093 unknown function unknown function 1 6264 6560
YP_009013316.1 NC_023700_p9 hypothetical protein phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 5432 5713
YP_009013352.1 NC_023700_p45 hypothetical protein phrog_778 tail assembly protein tail 1 29241 30062