| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023700 |
Definition |
Pseudomonas phage PA1/KOR/2010, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
34553 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
64.76 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009013325.1 | NC_023700_p18 | hypothetical protein | phrog_4057 | unknown function | unknown function | 1 | 8681 | 8923 |
| YP_009013324.1 | NC_023700_p17 | structural protein | phrog_873 | endolysin | head and packaging | 1 | 8265 | 8681 |
| YP_009013342.1 | NC_023700_p35 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 19618 | 20034 |
| YP_009013312.1 | NC_023700_p5 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 3912 | 4205 |
| YP_009013351.1 | NC_023700_p44 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 27548 | 29251 |
| YP_009013310.1 | NC_023700_p3 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 2770 | 3417 |
| YP_009013338.1 | NC_023700_p31 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | 1 | 17735 | 18133 |
| YP_009013308.1 | NC_023700_p1 | transposase A | phrog_310 | transposase | integration and excision | 1 | 132 | 2006 |
| YP_009013332.1 | NC_023700_p25 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 14785 | 15252 |
| YP_009013315.1 | NC_023700_p8 | hypothetical protein | phrog_4367 | unknown function | unknown function | 1 | 5121 | 5429 |
| YP_009013323.1 | NC_023700_p16 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 7843 | 8265 |
| YP_009013350.1 | NC_023700_p43 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 26625 | 27548 |
| YP_009013311.1 | NC_023700_p4 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 3518 | 3931 |
| YP_009013336.1 | NC_023700_p29 | hypothetical protein | phrog_3865 | unknown function | unknown function | 1 | 16178 | 16399 |
| YP_009013326.1 | NC_023700_p19 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 8920 | 9321 |
| YP_009013358.1 | NC_023700_p51 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 34239 | 34463 |
| YP_009013357.1 | NC_023700_p50 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 33891 | 34160 |
| YP_009013346.1 | NC_023700_p39 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 21484 | 21969 |
| YP_009013327.1 | NC_023700_p20 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 9432 | 9620 |
| YP_009013344.1 | NC_023700_p37 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 20498 | 20677 |
| YP_009013322.1 | NC_023700_p15 | hypothetical protein | phrog_3648 | unknown function | unknown function | 1 | 7503 | 7850 |
| YP_009013341.1 | NC_023700_p34 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 19418 | 19621 |
| YP_009013309.1 | NC_023700_p2 | DNA transposition protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 2003 | 2773 |
| YP_009013328.1 | NC_023700_p21 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 9629 | 10129 |
| YP_009013353.1 | NC_023700_p46 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 30071 | 30310 |
| YP_009013355.1 | NC_023700_p48 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 30515 | 32722 |
| YP_009013343.1 | NC_023700_p36 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 20031 | 20510 |
| YP_009013340.1 | NC_023700_p33 | hypothetical protein | phrog_7976 | unknown function | unknown function | 1 | 19081 | 19383 |
| YP_009013349.1 | NC_023700_p42 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 25667 | 26623 |
| YP_009013329.1 | NC_023700_p22 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 10126 | 11901 |
| YP_009013335.1 | NC_023700_p28 | hypothetical protein | phrog_26475 | unknown function | unknown function | 1 | 15966 | 16181 |
| YP_009013321.1 | NC_023700_p14 | integral membrane protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 6966 | 7400 |
| YP_009013320.1 | NC_023700_p13 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 6557 | 6964 |
| YP_009013331.1 | NC_023700_p24 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 13499 | 14785 |
| YP_009013313.1 | NC_023700_p6 | hypothetical protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 4222 | 4740 |
| YP_009013348.1 | NC_023700_p41 | tail component protein | phrog_24 | tail length tape measure protein | tail | 1 | 22094 | 25660 |
| YP_009013356.1 | NC_023700_p49 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 32731 | 33870 |
| YP_009013333.1 | NC_023700_p26 | hypothetical protein | phrog_17406 | unknown function | unknown function | 1 | 15365 | 15529 |
| YP_009013318.1 | NC_023700_p11 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 5924 | 6193 |
| YP_009013314.1 | NC_023700_p7 | host nuclease inhibitor protein | phrog_6755 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 4742 | 5119 |
| YP_009013317.1 | NC_023700_p10 | hypothetical protein | phrog_3223 | unknown function | unknown function | 1 | 5715 | 5921 |
| YP_009013334.1 | NC_023700_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15703 | 15945 |
| YP_009013337.1 | NC_023700_p30 | protease (I) and scaffold (Z) proteins | phrog_328 | head maturation protease | head and packaging | 1 | 16619 | 17725 |
| YP_009013347.1 | NC_023700_p40 | hypothetical protein gpGT | phrog_10839 | unknown function | unknown function | 1 | 21969 | 22097 |
| YP_009013354.1 | NC_023700_p47 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 30307 | 30525 |
| YP_009013330.1 | NC_023700_p23 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 11913 | 13499 |
| YP_009013339.1 | NC_023700_p32 | major head subunit protein | phrog_371 | major head protein | head and packaging | 1 | 18161 | 19069 |
| YP_009013345.1 | NC_023700_p38 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 20710 | 21480 |
| YP_009013319.1 | NC_023700_p12 | hypothetical protein | phrog_4093 | unknown function | unknown function | 1 | 6264 | 6560 |
| YP_009013316.1 | NC_023700_p9 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 5432 | 5713 |
| YP_009013352.1 | NC_023700_p45 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 29241 | 30062 |