| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023702 |
Definition |
Mycobacterium phage Kugel, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52379 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
63.83 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009013459.1 | NC_023702_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1199 | 1420 |
| YP_009013513.1 | NC_023702_p58 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40473 | 40607 |
| YP_009013471.1 | NC_023702_p16 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 11675 | 12868 |
| YP_009013505.1 | NC_023702_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36059 | 36874 |
| YP_009013458.1 | NC_023702_p3 | hypothetical protein | phrog_22409 | unknown function | unknown function | 1 | 1035 | 1199 |
| YP_009013491.1 | NC_023702_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28207 | 29163 |
| YP_009013520.1 | NC_023702_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42243 | 42680 |
| YP_009013525.1 | NC_023702_p70 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44145 | 44438 |
| YP_009013473.1 | NC_023702_p18 | hypothetical protein | phrog_2348 | unknown function | unknown function | 1 | 13308 | 13436 |
| YP_009013531.1 | NC_023702_p76 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46266 | 46661 |
| YP_009013507.1 | NC_023702_p52 | Intein domain | phrog_221 | metallo-phosphoesterase | other | -1 | 37012 | 38730 |
| YP_009013460.1 | NC_023702_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1434 | 1868 |
| YP_009013527.1 | NC_023702_p72 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44759 | 44941 |
| YP_009013497.1 | NC_023702_p42 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32366 | 32536 |
| YP_009013509.1 | NC_023702_p54 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38903 | 39457 |
| YP_009013542.1 | NC_023702_p87 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49459 | 50139 |
| YP_009013502.1 | NC_023702_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35131 | 35361 |
| YP_009013478.1 | NC_023702_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15601 | 16499 |
| YP_009013481.1 | NC_023702_p26 | minor tail | phrog_106 | minor tail protein | tail | 1 | 19015 | 21072 |
| YP_009013501.1 | NC_023702_p46 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33268 | 35094 |
| YP_009013496.1 | NC_023702_p41 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31980 | 32369 |
| YP_009013523.1 | NC_023702_p68 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43808 | 43936 |
| YP_009013534.1 | NC_023702_p79 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47773 | 48042 |
| YP_009013546.1 | NC_023702_p91 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 50856 | 51209 |
| YP_009013519.1 | NC_023702_p64 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41954 | 42232 |
| YP_009013522.1 | NC_023702_p67 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43638 | 43811 |
| YP_009013493.1 | NC_023702_p38 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 29732 | 31234 |
| YP_009013494.1 | NC_023702_p39 | hypothetical protein | phrog_27933 | unknown function | unknown function | -1 | 31308 | 31700 |
| YP_009013547.1 | NC_023702_p92 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51206 | 51304 |
| YP_009013468.1 | NC_023702_p13 | portal | phrog_104 | portal protein | head and packaging | 1 | 8737 | 10203 |
| YP_009013550.1 | NC_023702_p95 | hypothetical protein | phrog_21178 | unknown function | unknown function | -1 | 52058 | 52321 |
| YP_009013530.1 | NC_023702_p75 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45943 | 46269 |
| YP_009013536.1 | NC_023702_p81 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48239 | 48427 |
| YP_009013472.1 | NC_023702_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12889 | 13311 |
| YP_009013500.1 | NC_023702_p45 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32891 | 33247 |
| YP_009013541.1 | NC_023702_p86 | hypothetical protein | phrog_16282 | unknown function | unknown function | -1 | 49287 | 49355 |
| YP_009013543.1 | NC_023702_p88 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 50206 | 50490 |
| YP_009013515.1 | NC_023702_p60 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41067 | 41153 |
| YP_009013538.1 | NC_023702_p83 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48591 | 48719 |
| YP_009013503.1 | NC_023702_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35392 | 35883 |
| YP_009013518.1 | NC_023702_p63 | hypothetical protein | phrog_1546 | unknown function | unknown function | -1 | 41598 | 41957 |
| YP_009013512.1 | NC_023702_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40318 | 40476 |
| YP_009013517.1 | NC_023702_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41358 | 41474 |
| YP_009013475.1 | NC_023702_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13813 | 14208 |
| YP_009013537.1 | NC_023702_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48427 | 48594 |
| YP_009013539.1 | NC_023702_p84 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48740 | 48889 |
| YP_009013483.1 | NC_023702_p28 | minor tail | phrog_110 | minor tail protein | tail | 1 | 21273 | 23075 |
| YP_009013516.1 | NC_023702_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41150 | 41251 |
| YP_009013495.1 | NC_023702_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31717 | 31983 |
| YP_009013476.1 | NC_023702_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14212 | 14658 |
| YP_009013498.1 | NC_023702_p43 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32533 | 32619 |
| YP_009013466.1 | NC_023702_p11 | LysB | phrog_102 | endolysin | lysis | 1 | 6058 | 7026 |
| YP_009013492.1 | NC_023702_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29284 | 29580 |
| YP_009013533.1 | NC_023702_p78 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47477 | 47776 |
| YP_009013486.1 | NC_023702_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23900 | 24247 |
| YP_009013464.1 | NC_023702_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4399 | 4656 |
| YP_009013526.1 | NC_023702_p71 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44435 | 44755 |
| YP_009013482.1 | NC_023702_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21091 | 21273 |
| YP_009013456.1 | NC_023702_p1 | HNH domain | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 596 | 904 |
| YP_009013528.1 | NC_023702_p73 | hypothetical protein | phrog_5961 | unknown function | unknown function | -1 | 44938 | 45096 |
| YP_009013465.1 | NC_023702_p10 | LysA | phrog_317 | endolysin | lysis | 1 | 4656 | 6068 |
| YP_009013499.1 | NC_023702_p44 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32625 | 32894 |
| YP_009013477.1 | NC_023702_p22 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 14667 | 15518 |
| YP_009013540.1 | NC_023702_p85 | hypothetical protein | phrog_5798 | unknown function | unknown function | -1 | 48886 | 49158 |
| YP_009013535.1 | NC_023702_p80 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 48039 | 48242 |
| YP_009013462.1 | NC_023702_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3406 | 4116 |
| YP_009013548.1 | NC_023702_p93 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 51382 | 51783 |
| YP_009013524.1 | NC_023702_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43933 | 44142 |
| YP_009013521.1 | NC_023702_p66 | DnaB | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42817 | 43638 |
| YP_009013489.1 | NC_023702_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27689 | 28009 |
| YP_009013504.1 | NC_023702_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35880 | 36062 |
| YP_009013467.1 | NC_023702_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7046 | 8737 |
| YP_009013544.1 | NC_023702_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50528 | 50617 |
| YP_009013510.1 | NC_023702_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39454 | 40035 |
| YP_009013490.1 | NC_023702_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28019 | 28210 |
| YP_009013484.1 | NC_023702_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23113 | 23559 |
| YP_009013532.1 | NC_023702_p77 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46703 | 47215 |
| YP_009013480.1 | NC_023702_p25 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16511 | 18991 |
| YP_009013506.1 | NC_023702_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36867 | 37007 |
| YP_009013469.1 | NC_023702_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10200 | 11084 |
| YP_009013545.1 | NC_023702_p90 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 50671 | 50859 |
| YP_009013463.1 | NC_023702_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4130 | 4390 |
| YP_009013470.1 | NC_023702_p15 | scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 11145 | 11642 |
| YP_009013457.1 | NC_023702_p2 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 901 | 1017 |
| YP_009013529.1 | NC_023702_p74 | AddB domain | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45126 | 45950 |
| YP_009013488.1 | NC_023702_p33 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26118 | 27596 |
| YP_009013514.1 | NC_023702_p59 | endoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40604 | 41080 |
| YP_009013549.1 | NC_023702_p94 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51792 | 51995 |
| YP_009013511.1 | NC_023702_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39824 | 40339 |
| YP_009013508.1 | NC_023702_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38727 | 38906 |
| YP_009013461.1 | NC_023702_p6 | tail | phrog_1197 | tail protein | tail | 1 | 2326 | 3396 |
| YP_009013485.1 | NC_023702_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23556 | 23903 |
| YP_009013487.1 | NC_023702_p32 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 24272 | 26125 |
| YP_009013479.1 | NC_023702_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15601 | 16077 |
| YP_009013474.1 | NC_023702_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13433 | 13813 |