| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023703 |
Definition |
Mycobacterium phage Dori, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
64613 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
65.98 |
Number of singletons |
18 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009013554.1 | NC_023703_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2393 | 2584 |
| YP_009013572.1 | NC_023703_p22 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 16225 | 16629 |
| YP_009013588.1 | NC_023703_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35255 | 35452 |
| YP_009013556.1 | NC_023703_p6 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 3274 | 3681 |
| YP_009013605.1 | NC_023703_p55 | hypothetical protein | phrog_5015 | unknown function | unknown function | 1 | 46509 | 47012 |
| YP_009013587.1 | NC_023703_p37 | hypothetical protein | phrog_2804 | virion structural protein | head and packaging | 1 | 34528 | 35232 |
| YP_009013608.1 | NC_023703_p58 | hypothetical protein | phrog_1810 | unknown function | unknown function | 1 | 47703 | 48095 |
| YP_009013619.1 | NC_023703_p69 | HNH domain | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 53193 | 53732 |
| YP_009013622.1 | NC_023703_p72 | DNA methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 54225 | 55727 |
| YP_009013644.1 | NC_023703_p94 | hypothetical protein | phrog_26576 | unknown function | unknown function | -1 | 64210 | 64530 |
| YP_009013552.1 | NC_023703_p2 | endoVII | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 249 | 815 |
| YP_009013591.1 | NC_023703_p41 | LysB | phrog_102 | endolysin | lysis | 1 | 36640 | 37869 |
| YP_009013621.1 | NC_023703_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54043 | 54225 |
| YP_009013593.1 | NC_023703_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39692 | 40051 |
| YP_009013585.1 | NC_023703_p35 | hypothetical protein | phrog_941 | unknown function | unknown function | 1 | 33401 | 34099 |
| YP_009013575.1 | NC_023703_p25 | hypothetical protein | phrog_838 | unknown function | unknown function | 1 | 23120 | 24547 |
| YP_009013601.1 | NC_023703_p51 | phage antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 44920 | 45693 |
| YP_009013566.1 | NC_023703_p16 | hypothetical protein | phrog_2525 | unknown function | unknown function | 1 | 12908 | 13240 |
| YP_009013617.1 | NC_023703_p67 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52520 | 52948 |
| YP_009013582.1 | NC_023703_p32 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 30878 | 31522 |
| YP_009013623.1 | NC_023703_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55724 | 55849 |
| YP_009013638.1 | NC_023703_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 61268 | 62683 |
| YP_009013594.1 | NC_023703_p44 | hypothetical protein | phrog_19663 | unknown function | unknown function | -1 | 40243 | 40530 |
| YP_009013581.1 | NC_023703_p31 | hypothetical protein | phrog_948 | unknown function | unknown function | 1 | 30423 | 30851 |
| YP_009013612.1 | NC_023703_p62 | hypothetical protein | phrog_11506 | unknown function | unknown function | 1 | 48770 | 49126 |
| YP_009013614.1 | NC_023703_p64 | RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 50133 | 51218 |
| YP_009013604.1 | NC_023703_p54 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 46186 | 46512 |
| YP_009013578.1 | NC_023703_p28 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 28425 | 28751 |
| YP_009013568.1 | NC_023703_p18 | hypothetical protein | phrog_5711 | head fiber protein | head and packaging | 1 | 14192 | 14587 |
| YP_009013590.1 | NC_023703_p40 | hypothetical protein | phrog_7499 | unknown function | unknown function | 1 | 36425 | 36640 |
| YP_009013636.1 | NC_023703_p86 | PinR | phrog_125 | DNA invertase | DNA, RNA and nucleotide metabolism | 1 | 60080 | 60688 |
| YP_009013607.1 | NC_023703_p57 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 47308 | 47706 |
| YP_009013574.1 | NC_023703_p24 | tapemeasure | phrog_934 | tail length tape measure protein | tail | 1 | 17415 | 23120 |
| YP_009013629.1 | NC_023703_p79 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 57323 | 57493 |
| YP_009013641.1 | NC_023703_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63259 | 63528 |
| YP_009013589.1 | NC_023703_p39 | LysA | phrog_6707 | endolysin | lysis | 1 | 35493 | 36428 |
| YP_009013569.1 | NC_023703_p19 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 14673 | 15431 |
| YP_009013616.1 | NC_023703_p66 | hypothetical protein | phrog_210 | unknown function | unknown function | 1 | 51686 | 52519 |
| YP_009013592.1 | NC_023703_p42 | DNA methylase N-4/N-6 | phrog_67 | DNA methyltransferase | other | 1 | 37990 | 39627 |
| YP_009013609.1 | NC_023703_p59 | hypothetical protein | phrog_11875 | unknown function | unknown function | 1 | 48092 | 48304 |
| YP_009013599.1 | NC_023703_p49 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 44285 | 44563 |
| YP_009013643.1 | NC_023703_p93 | hypothetical protein | phrog_22338 | unknown function | unknown function | -1 | 63872 | 64171 |
| YP_009013598.1 | NC_023703_p48 | hypothetical protein | phrog_6288 | unknown function | unknown function | -1 | 43438 | 44088 |
| YP_009013625.1 | NC_023703_p75 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 56198 | 56362 |
| YP_009013597.1 | NC_023703_p47 | hypothetical protein | phrog_3732 | unknown function | unknown function | -1 | 42728 | 43441 |
| YP_009013558.1 | NC_023703_p8 | portal | phrog_859 | portal protein | head and packaging | 1 | 5655 | 8153 |
| YP_009013634.1 | NC_023703_p84 | similar to M. avium flagellar hook length control protein | phrog_27872 | unknown function | unknown function | 1 | 59298 | 59654 |
| YP_009013642.1 | NC_023703_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63628 | 63804 |
| YP_009013570.1 | NC_023703_p20 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 15428 | 15976 |
| YP_009013562.1 | NC_023703_p12 | hypothetical protein | phrog_14250 | unknown function | unknown function | 1 | 11226 | 11591 |
| YP_009013600.1 | NC_023703_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44696 | 44821 |
| YP_009013606.1 | NC_023703_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47063 | 47311 |
| YP_009013640.1 | NC_023703_p90 | TnpR resolvase domain | singleton | unknown function | unknown function | 1 | 63018 | 63221 |
| YP_009013637.1 | NC_023703_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60759 | 61271 |
| YP_009013635.1 | NC_023703_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59834 | 59992 |
| YP_009013567.1 | NC_023703_p17 | hypothetical protein | phrog_792 | major tail protein | tail | 1 | 13328 | 14131 |
| YP_009013633.1 | NC_023703_p83 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 58816 | 59301 |
| YP_009013615.1 | NC_023703_p65 | hypothetical protein | phrog_204 | unknown function | unknown function | 1 | 51304 | 51642 |
| YP_009013631.1 | NC_023703_p81 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 57732 | 58109 |
| YP_009013560.1 | NC_023703_p10 | hypothetical protein | phrog_777 | major head protein | head and packaging | 1 | 8393 | 10276 |
| YP_009013580.1 | NC_023703_p30 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 30025 | 30414 |
| YP_009013576.1 | NC_023703_p26 | hypothetical protein | phrog_837 | minor tail protein | tail | 1 | 24544 | 25590 |
| YP_009013627.1 | NC_023703_p77 | hypothetical protein | phrog_18450 | unknown function | unknown function | 1 | 56600 | 56884 |
| YP_009013583.1 | NC_023703_p33 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 31519 | 32118 |
| YP_009013628.1 | NC_023703_p78 | hypothetical protein | phrog_9720 | unknown function | unknown function | 1 | 56952 | 57326 |
| YP_009013626.1 | NC_023703_p76 | hypothetical protein | phrog_1495 | unknown function | unknown function | 1 | 56362 | 56595 |
| YP_009013639.1 | NC_023703_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 62680 | 62958 |
| YP_009013613.1 | NC_023703_p63 | YqaJ recombinse domain | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 49123 | 50127 |
| YP_009013596.1 | NC_023703_p46 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 42059 | 42481 |
| YP_009013595.1 | NC_023703_p45 | tyrosine integrase | phrog_1 | integrase | integration and excision | -1 | 40820 | 42022 |
| YP_009013579.1 | NC_023703_p29 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 28828 | 29994 |
| YP_009013577.1 | NC_023703_p27 | hypothetical protein | phrog_3493 | minor tail protein | tail | 1 | 25587 | 28415 |
| YP_009013563.1 | NC_023703_p13 | hypothetical protein | phrog_565 | holin | lysis | 1 | 11588 | 11983 |
| YP_009013551.1 | NC_023703_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1 | 252 |
| YP_009013630.1 | NC_023703_p80 | DNA binding domain | singleton | unknown function | unknown function | 1 | 57490 | 57729 |
| YP_009013557.1 | NC_023703_p7 | hypothetical protein | phrog_776 | portal protein | head and packaging | 1 | 3691 | 5658 |
| YP_009013603.1 | NC_023703_p53 | RDF | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 45995 | 46186 |
| YP_009013611.1 | NC_023703_p61 | hypothetical protein | phrog_5806 | unknown function | unknown function | 1 | 48639 | 48773 |
| YP_009013555.1 | NC_023703_p5 | hypothetical protein | phrog_928 | unknown function | unknown function | 1 | 2681 | 3202 |
| YP_009013620.1 | NC_023703_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53729 | 54043 |
| YP_009013571.1 | NC_023703_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15990 | 16238 |
| YP_009013586.1 | NC_023703_p36 | hypothetical protein | phrog_892 | tail fiber protein | tail | 1 | 34118 | 34531 |
| YP_009013561.1 | NC_023703_p11 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 10375 | 11223 |
| YP_009013624.1 | NC_023703_p74 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 55849 | 56205 |
| YP_009013553.1 | NC_023703_p3 | terminase | phrog_38 | terminase large subunit | head and packaging | 1 | 815 | 2365 |
| YP_009013618.1 | NC_023703_p68 | hypothetical protein | phrog_6109 | unknown function | unknown function | 1 | 52948 | 53190 |
| YP_009013602.1 | NC_023703_p52 | hypothetical protein | phrog_35761 | unknown function | unknown function | 1 | 45696 | 45998 |
| YP_009013559.1 | NC_023703_p9 | hypothetical protein | phrog_2069 | unknown function | unknown function | 1 | 8150 | 8341 |
| YP_009013565.1 | NC_023703_p15 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 12459 | 12911 |
| YP_009013573.1 | NC_023703_p23 | hypothetical protein | phrog_1118 | tail assembly chaperone | tail | 1 | 16796 | 17389 |
| YP_009013632.1 | NC_023703_p82 | hypothetical protein | phrog_26247 | unknown function | unknown function | 1 | 58386 | 58685 |
| YP_009013564.1 | NC_023703_p14 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 11980 | 12462 |
| YP_009013584.1 | NC_023703_p34 | hypothetical protein | phrog_3329 | unknown function | unknown function | 1 | 32115 | 33401 |
| YP_009013610.1 | NC_023703_p60 | WhiB | phrog_12112 | transcriptional regulator WhiB-like | transcription regulation | 1 | 48301 | 48642 |