Genomic map of Mycobacterium virus Doom (NC_023704)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023704
Definition
Mycobacterium phage Doom, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
51421
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
85
%GC
63.8
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009013672.1 NC_023704_p28 minor tail subunit phrog_110 minor tail protein tail 1 21888 23690
YP_009013655.1 NC_023704_p11 terminase phrog_9 terminase large subunit head and packaging 1 7247 8935
YP_009013646.1 NC_023704_p2 hypothetical protein phrog_14140 unknown function unknown function 1 900 1091
YP_009013650.1 NC_023704_p6 hypothetical protein phrog_553 minor tail protein tail 1 3605 4297
YP_009013681.1 NC_023704_p37 integrase (S-int) phrog_95 integrase integration and excision 1 29713 31212
YP_009013697.1 NC_023704_p53 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38534 39055
YP_009013728.1 NC_023704_p84 hypothetical protein phrog_828 unknown function unknown function -1 50419 50622
YP_009013682.1 NC_023704_p38 hypothetical protein phrog_1966 unknown function unknown function -1 31333 31605
YP_009013692.1 NC_023704_p48 hypothetical protein phrog_499 unknown function unknown function -1 35897 36079
YP_009013727.1 NC_023704_p83 hypothetical protein phrog_22818 unknown function unknown function -1 49886 50422
YP_009013724.1 NC_023704_p80 hypothetical protein phrog_26173 unknown function unknown function -1 48905 49249
YP_009013691.1 NC_023704_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35409 35900
YP_009013656.1 NC_023704_p12 portal phrog_104 portal protein head and packaging 1 8932 10374
YP_009013661.1 NC_023704_p17 hypothetical protein phrog_1857 head-tail connector protein connector 1 13116 13634
YP_009013717.1 NC_023704_p73 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 46703 46870
YP_009013676.1 NC_023704_p32 minor tail subunit phrog_346 minor tail protein tail 1 24887 26740
YP_009013696.1 NC_023704_p52 hypothetical protein phrog_1167 phosphofructokinase other -1 37764 38537
YP_009013680.1 NC_023704_p36 hypothetical protein phrog_12500 minor tail protein tail 1 28822 29508
YP_009013653.1 NC_023704_p9 lysin A phrog_317 endolysin lysis 1 4836 6269
YP_009013665.1 NC_023704_p21 hypothetical protein phrog_123 tail terminator connector 1 14844 15290
YP_009013657.1 NC_023704_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10371 11252
YP_009013695.1 NC_023704_p51 RDF phrog_221 metallo-phosphoesterase other -1 37000 37767
YP_009013704.1 NC_023704_p60 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 41392 41667
YP_009013709.1 NC_023704_p65 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43112 43936
YP_009013660.1 NC_023704_p16 hypothetical protein phrog_30633 unknown function unknown function 1 12852 13040
YP_009013693.1 NC_023704_p49 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36076 36867
YP_009013651.1 NC_023704_p7 hypothetical protein phrog_1718 tail protein tail 1 4311 4571
YP_009013702.1 NC_023704_p58 endo VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40855 41322
YP_009013725.1 NC_023704_p81 hypothetical protein phrog_6842 unknown function unknown function -1 49210 49545
YP_009013675.1 NC_023704_p31 hypothetical protein phrog_1397 unknown function unknown function 1 24515 24862
YP_009013663.1 NC_023704_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 14083 14445
YP_009013677.1 NC_023704_p33 D-Ala-D-Ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 26760 28211
YP_009013719.1 NC_023704_p75 hypothetical protein phrog_9026 unknown function unknown function -1 46992 47204
YP_009013684.1 NC_023704_p40 hypothetical protein phrog_722 unknown function unknown function -1 31988 32350
YP_009013722.1 NC_023704_p78 hypothetical protein phrog_363 DNA methyltransferase other -1 47839 48519
YP_009013708.1 NC_023704_p64 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 42903 43085
YP_009013698.1 NC_023704_p54 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38901 39416
YP_009013667.1 NC_023704_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16337 17136
YP_009013694.1 NC_023704_p50 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36860 36994
YP_009013652.1 NC_023704_p8 hypothetical protein phrog_747 unknown function unknown function 1 4579 4836
YP_009013718.1 NC_023704_p74 hypothetical protein phrog_2093 unknown function unknown function -1 46867 46995
YP_009013662.1 NC_023704_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13634 14083
YP_009013720.1 NC_023704_p76 DnaJ-like phrog_15035 unknown function unknown function -1 47201 47395
YP_009013654.1 NC_023704_p10 lysin B phrog_102 endolysin lysis 1 6259 7227
YP_009013726.1 NC_023704_p82 hypothetical protein phrog_15443 unknown function unknown function -1 49677 49889
YP_009013690.1 NC_023704_p46 hypothetical protein phrog_1781 unknown function unknown function -1 35148 35378
YP_009013688.1 NC_023704_p44 hypothetical protein phrog_383 unknown function unknown function -1 32902 33264
YP_009013674.1 NC_023704_p30 hypothetical protein phrog_981 minor tail protein tail 1 24171 24518
YP_009013729.1 NC_023704_p85 hypothetical protein phrog_14103 unknown function unknown function -1 50696 50884
YP_009013669.1 NC_023704_p25 tapemeasure phrog_305 tail length tape measure protein tail 1 17148 19628
YP_009013716.1 NC_023704_p72 hypothetical protein phrog_1155 unknown function unknown function -1 46515 46703
YP_009013679.1 NC_023704_p35 hypothetical protein phrog_1560 unknown function unknown function 1 28634 28825
YP_009013714.1 NC_023704_p70 hypothetical protein phrog_1720 unknown function unknown function -1 46049 46318
YP_009013712.1 NC_023704_p68 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44677 45189
YP_009013707.1 NC_023704_p63 hypothetical protein phrog_520 unknown function unknown function -1 42606 42899
YP_009013687.1 NC_023704_p43 hypothetical protein phrog_9480 unknown function unknown function -1 32609 32905
YP_009013659.1 NC_023704_p15 major capsid phrog_10 major head protein head and packaging 1 11833 12852
YP_009013645.1 NC_023704_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 596 892
YP_009013703.1 NC_023704_p59 hypothetical protein phrog_1019 unknown function unknown function -1 41309 41395
YP_009013664.1 NC_023704_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14445 14840
YP_009013678.1 NC_023704_p34 hypothetical protein phrog_644 unknown function unknown function 1 28304 28624
YP_009013723.1 NC_023704_p79 hypothetical protein phrog_2985 unknown function unknown function -1 48593 48748
YP_009013713.1 NC_023704_p69 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 45451 45750
YP_009013670.1 NC_023704_p26 minor tail subunit phrog_106 minor tail protein tail 1 19652 21709
YP_009013699.1 NC_023704_p55 hypothetical protein phrog_1783 unknown function unknown function -1 39395 39562
YP_009013705.1 NC_023704_p61 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41667 42476
YP_009013701.1 NC_023704_p57 DNA methylase phrog_67 DNA methyltransferase other -1 39845 40834
YP_009013685.1 NC_023704_p41 hypothetical protein phrog_2035 unknown function unknown function -1 32350 32520
YP_009013658.1 NC_023704_p14 scaffolding phrog_233 head scaffolding protein head and packaging 1 11311 11823
YP_009013711.1 NC_023704_p67 hypothetical protein phrog_1809 unknown function unknown function -1 44240 44635
YP_009013710.1 NC_023704_p66 hypothetical protein phrog_1584 unknown function unknown function -1 43929 44243
YP_009013647.1 NC_023704_p3 hypothetical protein phrog_226 minor tail protein tail 1 1128 1568
YP_009013700.1 NC_023704_p56 hypothetical protein phrog_397 unknown function unknown function -1 39559 39819
YP_009013671.1 NC_023704_p27 hypothetical protein phrog_1543 minor tail protein tail 1 21706 21888
YP_009013649.1 NC_023704_p5 structural phrog_1197 tail protein tail 1 2516 3586
YP_009013715.1 NC_023704_p71 hypothetical protein phrog_1387 unknown function unknown function -1 46315 46518
YP_009013689.1 NC_023704_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33285 35111
YP_009013673.1 NC_023704_p29 hypothetical protein phrog_352 minor tail protein tail 1 23728 24174
YP_009013721.1 NC_023704_p77 hypothetical protein phrog_932 unknown function unknown function -1 47420 47569
YP_009013666.1 NC_023704_p22 major tail subunit phrog_117 major tail protein tail 1 15299 16150
YP_009013686.1 NC_023704_p42 hypothetical protein phrog_1860 unknown function unknown function -1 32517 32612
YP_009013683.1 NC_023704_p39 hypothetical protein phrog_2387 nucleotide kinase other -1 31602 31991
YP_009013668.1 NC_023704_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16337 16714
YP_009013648.1 NC_023704_p4 hypothetical protein phrog_18747 unknown function unknown function 1 1700 2014
YP_009013706.1 NC_023704_p62 hypothetical protein phrog_1705 unknown function unknown function -1 42463 42609