| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023704 |
Definition |
Mycobacterium phage Doom, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
51421 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
85 |
%GC |
63.8 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009013672.1 | NC_023704_p28 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 21888 | 23690 |
| YP_009013655.1 | NC_023704_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7247 | 8935 |
| YP_009013646.1 | NC_023704_p2 | hypothetical protein | phrog_14140 | unknown function | unknown function | 1 | 900 | 1091 |
| YP_009013650.1 | NC_023704_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3605 | 4297 |
| YP_009013681.1 | NC_023704_p37 | integrase (S-int) | phrog_95 | integrase | integration and excision | 1 | 29713 | 31212 |
| YP_009013697.1 | NC_023704_p53 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38534 | 39055 |
| YP_009013728.1 | NC_023704_p84 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 50419 | 50622 |
| YP_009013682.1 | NC_023704_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31333 | 31605 |
| YP_009013692.1 | NC_023704_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35897 | 36079 |
| YP_009013727.1 | NC_023704_p83 | hypothetical protein | phrog_22818 | unknown function | unknown function | -1 | 49886 | 50422 |
| YP_009013724.1 | NC_023704_p80 | hypothetical protein | phrog_26173 | unknown function | unknown function | -1 | 48905 | 49249 |
| YP_009013691.1 | NC_023704_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35409 | 35900 |
| YP_009013656.1 | NC_023704_p12 | portal | phrog_104 | portal protein | head and packaging | 1 | 8932 | 10374 |
| YP_009013661.1 | NC_023704_p17 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13116 | 13634 |
| YP_009013717.1 | NC_023704_p73 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46703 | 46870 |
| YP_009013676.1 | NC_023704_p32 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 24887 | 26740 |
| YP_009013696.1 | NC_023704_p52 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37764 | 38537 |
| YP_009013680.1 | NC_023704_p36 | hypothetical protein | phrog_12500 | minor tail protein | tail | 1 | 28822 | 29508 |
| YP_009013653.1 | NC_023704_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4836 | 6269 |
| YP_009013665.1 | NC_023704_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14844 | 15290 |
| YP_009013657.1 | NC_023704_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10371 | 11252 |
| YP_009013695.1 | NC_023704_p51 | RDF | phrog_221 | metallo-phosphoesterase | other | -1 | 37000 | 37767 |
| YP_009013704.1 | NC_023704_p60 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41392 | 41667 |
| YP_009013709.1 | NC_023704_p65 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43112 | 43936 |
| YP_009013660.1 | NC_023704_p16 | hypothetical protein | phrog_30633 | unknown function | unknown function | 1 | 12852 | 13040 |
| YP_009013693.1 | NC_023704_p49 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36076 | 36867 |
| YP_009013651.1 | NC_023704_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4311 | 4571 |
| YP_009013702.1 | NC_023704_p58 | endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40855 | 41322 |
| YP_009013725.1 | NC_023704_p81 | hypothetical protein | phrog_6842 | unknown function | unknown function | -1 | 49210 | 49545 |
| YP_009013675.1 | NC_023704_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24515 | 24862 |
| YP_009013663.1 | NC_023704_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14083 | 14445 |
| YP_009013677.1 | NC_023704_p33 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26760 | 28211 |
| YP_009013719.1 | NC_023704_p75 | hypothetical protein | phrog_9026 | unknown function | unknown function | -1 | 46992 | 47204 |
| YP_009013684.1 | NC_023704_p40 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 31988 | 32350 |
| YP_009013722.1 | NC_023704_p78 | hypothetical protein | phrog_363 | DNA methyltransferase | other | -1 | 47839 | 48519 |
| YP_009013708.1 | NC_023704_p64 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42903 | 43085 |
| YP_009013698.1 | NC_023704_p54 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38901 | 39416 |
| YP_009013667.1 | NC_023704_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16337 | 17136 |
| YP_009013694.1 | NC_023704_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36860 | 36994 |
| YP_009013652.1 | NC_023704_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4579 | 4836 |
| YP_009013718.1 | NC_023704_p74 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 46867 | 46995 |
| YP_009013662.1 | NC_023704_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13634 | 14083 |
| YP_009013720.1 | NC_023704_p76 | DnaJ-like | phrog_15035 | unknown function | unknown function | -1 | 47201 | 47395 |
| YP_009013654.1 | NC_023704_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6259 | 7227 |
| YP_009013726.1 | NC_023704_p82 | hypothetical protein | phrog_15443 | unknown function | unknown function | -1 | 49677 | 49889 |
| YP_009013690.1 | NC_023704_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35148 | 35378 |
| YP_009013688.1 | NC_023704_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32902 | 33264 |
| YP_009013674.1 | NC_023704_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24171 | 24518 |
| YP_009013729.1 | NC_023704_p85 | hypothetical protein | phrog_14103 | unknown function | unknown function | -1 | 50696 | 50884 |
| YP_009013669.1 | NC_023704_p25 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 17148 | 19628 |
| YP_009013716.1 | NC_023704_p72 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 46515 | 46703 |
| YP_009013679.1 | NC_023704_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28634 | 28825 |
| YP_009013714.1 | NC_023704_p70 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 46049 | 46318 |
| YP_009013712.1 | NC_023704_p68 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44677 | 45189 |
| YP_009013707.1 | NC_023704_p63 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42606 | 42899 |
| YP_009013687.1 | NC_023704_p43 | hypothetical protein | phrog_9480 | unknown function | unknown function | -1 | 32609 | 32905 |
| YP_009013659.1 | NC_023704_p15 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 11833 | 12852 |
| YP_009013645.1 | NC_023704_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 596 | 892 |
| YP_009013703.1 | NC_023704_p59 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41309 | 41395 |
| YP_009013664.1 | NC_023704_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14445 | 14840 |
| YP_009013678.1 | NC_023704_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28304 | 28624 |
| YP_009013723.1 | NC_023704_p79 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 48593 | 48748 |
| YP_009013713.1 | NC_023704_p69 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45451 | 45750 |
| YP_009013670.1 | NC_023704_p26 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 19652 | 21709 |
| YP_009013699.1 | NC_023704_p55 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39395 | 39562 |
| YP_009013705.1 | NC_023704_p61 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41667 | 42476 |
| YP_009013701.1 | NC_023704_p57 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 39845 | 40834 |
| YP_009013685.1 | NC_023704_p41 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32350 | 32520 |
| YP_009013658.1 | NC_023704_p14 | scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 11311 | 11823 |
| YP_009013711.1 | NC_023704_p67 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 44240 | 44635 |
| YP_009013710.1 | NC_023704_p66 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 43929 | 44243 |
| YP_009013647.1 | NC_023704_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1128 | 1568 |
| YP_009013700.1 | NC_023704_p56 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39559 | 39819 |
| YP_009013671.1 | NC_023704_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21706 | 21888 |
| YP_009013649.1 | NC_023704_p5 | structural | phrog_1197 | tail protein | tail | 1 | 2516 | 3586 |
| YP_009013715.1 | NC_023704_p71 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 46315 | 46518 |
| YP_009013689.1 | NC_023704_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33285 | 35111 |
| YP_009013673.1 | NC_023704_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23728 | 24174 |
| YP_009013721.1 | NC_023704_p77 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 47420 | 47569 |
| YP_009013666.1 | NC_023704_p22 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15299 | 16150 |
| YP_009013686.1 | NC_023704_p42 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32517 | 32612 |
| YP_009013683.1 | NC_023704_p39 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31602 | 31991 |
| YP_009013668.1 | NC_023704_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16337 | 16714 |
| YP_009013648.1 | NC_023704_p4 | hypothetical protein | phrog_18747 | unknown function | unknown function | 1 | 1700 | 2014 |
| YP_009013706.1 | NC_023704_p62 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42463 | 42609 |