| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023705 |
Definition |
Mycobacterium phage Liefie, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Liefievirus. |
DB of origin |
REFSEQ |
Length |
41650 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
66.78 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009013766.1 | NC_023705_p37 | hypothetical protein | phrog_10116 | unknown function | unknown function | 1 | 30747 | 30929 |
| YP_009013788.1 | NC_023705_p59 | HNH | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40764 | 41090 |
| YP_009013770.1 | NC_023705_p41 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 31756 | 31908 |
| YP_009013787.1 | NC_023705_p58 | hypothetical protein | phrog_7328 | unknown function | unknown function | 1 | 40498 | 40740 |
| YP_009013752.1 | NC_023705_p23 | hypothetical protein | phrog_7598 | unknown function | unknown function | 1 | 22849 | 23169 |
| YP_009013742.1 | NC_023705_p13 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 9853 | 10467 |
| YP_009013767.1 | NC_023705_p38 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 30926 | 31276 |
| YP_009013754.1 | NC_023705_p25 | hypothetical protein | phrog_9511 | unknown function | unknown function | 1 | 23354 | 23629 |
| YP_009013781.1 | NC_023705_p52 | hypothetical protein | phrog_10006 | unknown function | unknown function | 1 | 38159 | 38317 |
| YP_009013764.1 | NC_023705_p35 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 29750 | 30148 |
| YP_009013746.1 | NC_023705_p17 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 15476 | 16648 |
| YP_009013732.1 | NC_023705_p3 | portal | phrog_104 | portal protein | head and packaging | 1 | 1887 | 3401 |
| YP_009013782.1 | NC_023705_p53 | hypothetical protein | phrog_7600 | unknown function | unknown function | 1 | 38314 | 38742 |
| YP_009013743.1 | NC_023705_p14 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10568 | 11463 |
| YP_009013784.1 | NC_023705_p55 | hypothetical protein | phrog_5436 | unknown function | unknown function | 1 | 39086 | 39850 |
| YP_009013785.1 | NC_023705_p56 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 39850 | 40032 |
| YP_009013745.1 | NC_023705_p16 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 11463 | 15476 |
| YP_009013761.1 | NC_023705_p32 | integrase | phrog_1 | integrase | integration and excision | -1 | 27719 | 28915 |
| YP_009013757.1 | NC_023705_p28 | LysB | phrog_102 | endolysin | lysis | 1 | 25200 | 26408 |
| YP_009013762.1 | NC_023705_p33 | repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 28912 | 29304 |
| YP_009013786.1 | NC_023705_p57 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40076 | 40399 |
| YP_009013783.1 | NC_023705_p54 | hypothetical protein | phrog_11054 | unknown function | unknown function | 1 | 38799 | 39083 |
| YP_009013731.1 | NC_023705_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 454 | 1890 |
| YP_009013765.1 | NC_023705_p36 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 30148 | 30747 |
| YP_009013760.1 | NC_023705_p31 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 27105 | 27722 |
| YP_009013747.1 | NC_023705_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16648 | 18402 |
| YP_009013748.1 | NC_023705_p19 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18402 | 18863 |
| YP_009013744.1 | NC_023705_p15 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10568 | 11077 |
| YP_009013758.1 | NC_023705_p29 | holin | phrog_7198 | holin | lysis | 1 | 26433 | 26783 |
| YP_009013755.1 | NC_023705_p26 | hypothetical protein | phrog_8517 | unknown function | unknown function | 1 | 23629 | 23823 |
| YP_009013774.1 | NC_023705_p45 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 35148 | 35519 |
| YP_009013778.1 | NC_023705_p49 | hypothetical protein | phrog_7576 | unknown function | unknown function | 1 | 36385 | 37023 |
| YP_009013772.1 | NC_023705_p43 | RecT | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33008 | 34411 |
| YP_009013776.1 | NC_023705_p47 | hypothetical protein | phrog_7826 | unknown function | unknown function | 1 | 35718 | 36038 |
| YP_009013763.1 | NC_023705_p34 | hypothetical protein | phrog_7506 | recombination directionality factor | integration and excision | 1 | 29496 | 29753 |
| YP_009013730.1 | NC_023705_p1 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 42 | 386 |
| YP_009013753.1 | NC_023705_p24 | hypothetical protein | phrog_8923 | unknown function | unknown function | 1 | 23172 | 23354 |
| YP_009013756.1 | NC_023705_p27 | LysA | phrog_880 | endolysin | lysis | 1 | 23884 | 25200 |
| YP_009013773.1 | NC_023705_p44 | hypothetical protein | phrog_7227 | unknown function | unknown function | 1 | 34414 | 34947 |
| YP_009013741.1 | NC_023705_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9413 | 9856 |
| YP_009013751.1 | NC_023705_p22 | hypothetical protein | phrog_7565 | minor tail protein | tail | 1 | 20441 | 22834 |
| YP_009013777.1 | NC_023705_p48 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 36035 | 36388 |
| YP_009013738.1 | NC_023705_p9 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 8313 | 8810 |
| YP_009013771.1 | NC_023705_p42 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31905 | 32990 |
| YP_009013749.1 | NC_023705_p20 | hypothetical protein | phrog_1565 | minor tail protein | tail | 1 | 18860 | 19996 |
| YP_009013735.1 | NC_023705_p6 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6513 | 7055 |
| YP_009013740.1 | NC_023705_p11 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9153 | 9416 |
| YP_009013779.1 | NC_023705_p50 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37020 | 37610 |
| YP_009013790.1 | NC_023705_p61 | hypothetical protein | phrog_3468 | unknown function | unknown function | 1 | 41294 | 41515 |
| YP_009013736.1 | NC_023705_p7 | capsid | phrog_10 | major head protein | head and packaging | 1 | 7102 | 8037 |
| YP_009013737.1 | NC_023705_p8 | hypothetical protein | phrog_3101 | unknown function | unknown function | 1 | 8074 | 8301 |
| YP_009013775.1 | NC_023705_p46 | hypothetical protein | phrog_21970 | unknown function | unknown function | 1 | 35527 | 35721 |
| YP_009013733.1 | NC_023705_p4 | protease | phrog_1752 | head maturation protease | head and packaging | 1 | 3402 | 6191 |
| YP_009013759.1 | NC_023705_p30 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 26788 | 27108 |
| YP_009013739.1 | NC_023705_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 8810 | 9166 |
| YP_009013769.1 | NC_023705_p40 | hypothetical protein | phrog_7392 | unknown function | unknown function | 1 | 31422 | 31772 |
| YP_009013750.1 | NC_023705_p21 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20007 | 20441 |
| YP_009013734.1 | NC_023705_p5 | scaffold | phrog_1757 | unknown function | unknown function | 1 | 6188 | 6394 |
| YP_009013768.1 | NC_023705_p39 | hypothetical protein | phrog_7486 | unknown function | unknown function | 1 | 31273 | 31422 |
| YP_009013780.1 | NC_023705_p51 | hypothetical protein | phrog_9043 | unknown function | unknown function | 1 | 37719 | 38162 |
| YP_009013789.1 | NC_023705_p60 | hypothetical protein | phrog_38358 | unknown function | unknown function | 1 | 41108 | 41272 |