Genomic map of Mycobacterium virus Liefie (NC_023705)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023705
Definition
Mycobacterium phage Liefie, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Liefievirus.
DB of origin
REFSEQ
Length
41650
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
66.78
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009013766.1 NC_023705_p37 hypothetical protein phrog_10116 unknown function unknown function 1 30747 30929
YP_009013788.1 NC_023705_p59 HNH phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40764 41090
YP_009013770.1 NC_023705_p41 hypothetical protein phrog_6734 unknown function unknown function 1 31756 31908
YP_009013787.1 NC_023705_p58 hypothetical protein phrog_7328 unknown function unknown function 1 40498 40740
YP_009013752.1 NC_023705_p23 hypothetical protein phrog_7598 unknown function unknown function 1 22849 23169
YP_009013742.1 NC_023705_p13 major tail subunit phrog_117 major tail protein tail 1 9853 10467
YP_009013767.1 NC_023705_p38 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 30926 31276
YP_009013754.1 NC_023705_p25 hypothetical protein phrog_9511 unknown function unknown function 1 23354 23629
YP_009013781.1 NC_023705_p52 hypothetical protein phrog_10006 unknown function unknown function 1 38159 38317
YP_009013764.1 NC_023705_p35 hypothetical protein phrog_5081 unknown function unknown function 1 29750 30148
YP_009013746.1 NC_023705_p17 hypothetical protein phrog_106 minor tail protein tail 1 15476 16648
YP_009013732.1 NC_023705_p3 portal phrog_104 portal protein head and packaging 1 1887 3401
YP_009013782.1 NC_023705_p53 hypothetical protein phrog_7600 unknown function unknown function 1 38314 38742
YP_009013743.1 NC_023705_p14 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 10568 11463
YP_009013784.1 NC_023705_p55 hypothetical protein phrog_5436 unknown function unknown function 1 39086 39850
YP_009013785.1 NC_023705_p56 hypothetical protein phrog_5505 unknown function unknown function 1 39850 40032
YP_009013745.1 NC_023705_p16 tapemeasure phrog_971 endolysin lysis 1 11463 15476
YP_009013761.1 NC_023705_p32 integrase phrog_1 integrase integration and excision -1 27719 28915
YP_009013757.1 NC_023705_p28 LysB phrog_102 endolysin lysis 1 25200 26408
YP_009013762.1 NC_023705_p33 repressor phrog_2328 transcriptional repressor transcription regulation -1 28912 29304
YP_009013786.1 NC_023705_p57 hypothetical protein phrog_658 unknown function unknown function 1 40076 40399
YP_009013783.1 NC_023705_p54 hypothetical protein phrog_11054 unknown function unknown function 1 38799 39083
YP_009013731.1 NC_023705_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 454 1890
YP_009013765.1 NC_023705_p36 hypothetical protein phrog_549 unknown function unknown function 1 30148 30747
YP_009013760.1 NC_023705_p31 hypothetical protein phrog_798 unknown function unknown function 1 27105 27722
YP_009013747.1 NC_023705_p18 minor tail protein phrog_110 minor tail protein tail 1 16648 18402
YP_009013748.1 NC_023705_p19 hypothetical protein phrog_1697 minor tail protein tail 1 18402 18863
YP_009013744.1 NC_023705_p15 tail assembly chaperone phrog_1861 unknown function unknown function 1 10568 11077
YP_009013758.1 NC_023705_p29 holin phrog_7198 holin lysis 1 26433 26783
YP_009013755.1 NC_023705_p26 hypothetical protein phrog_8517 unknown function unknown function 1 23629 23823
YP_009013774.1 NC_023705_p45 hypothetical protein phrog_3926 replication initiation protein DNA, RNA and nucleotide metabolism 1 35148 35519
YP_009013778.1 NC_023705_p49 hypothetical protein phrog_7576 unknown function unknown function 1 36385 37023
YP_009013772.1 NC_023705_p43 RecT phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33008 34411
YP_009013776.1 NC_023705_p47 hypothetical protein phrog_7826 unknown function unknown function 1 35718 36038
YP_009013763.1 NC_023705_p34 hypothetical protein phrog_7506 recombination directionality factor integration and excision 1 29496 29753
YP_009013730.1 NC_023705_p1 terminase small subunit phrog_1459 terminase small subunit head and packaging 1 42 386
YP_009013753.1 NC_023705_p24 hypothetical protein phrog_8923 unknown function unknown function 1 23172 23354
YP_009013756.1 NC_023705_p27 LysA phrog_880 endolysin lysis 1 23884 25200
YP_009013773.1 NC_023705_p44 hypothetical protein phrog_7227 unknown function unknown function 1 34414 34947
YP_009013741.1 NC_023705_p12 hypothetical protein phrog_123 tail terminator connector 1 9413 9856
YP_009013751.1 NC_023705_p22 hypothetical protein phrog_7565 minor tail protein tail 1 20441 22834
YP_009013777.1 NC_023705_p48 hypothetical protein phrog_2247 unknown function unknown function 1 36035 36388
YP_009013738.1 NC_023705_p9 hypothetical protein phrog_1290 head-tail adaptor connector 1 8313 8810
YP_009013771.1 NC_023705_p42 RecE phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 31905 32990
YP_009013749.1 NC_023705_p20 hypothetical protein phrog_1565 minor tail protein tail 1 18860 19996
YP_009013735.1 NC_023705_p6 hypothetical protein phrog_233 head scaffolding protein head and packaging 1 6513 7055
YP_009013740.1 NC_023705_p11 hypothetical protein phrog_387 neck protein connector 1 9153 9416
YP_009013779.1 NC_023705_p50 RuvC phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37020 37610
YP_009013790.1 NC_023705_p61 hypothetical protein phrog_3468 unknown function unknown function 1 41294 41515
YP_009013736.1 NC_023705_p7 capsid phrog_10 major head protein head and packaging 1 7102 8037
YP_009013737.1 NC_023705_p8 hypothetical protein phrog_3101 unknown function unknown function 1 8074 8301
YP_009013775.1 NC_023705_p46 hypothetical protein phrog_21970 unknown function unknown function 1 35527 35721
YP_009013733.1 NC_023705_p4 protease phrog_1752 head maturation protease head and packaging 1 3402 6191
YP_009013759.1 NC_023705_p30 hypothetical protein phrog_1177 unknown function unknown function 1 26788 27108
YP_009013739.1 NC_023705_p10 hypothetical protein phrog_763 head-tail adaptor connector 1 8810 9166
YP_009013769.1 NC_023705_p40 hypothetical protein phrog_7392 unknown function unknown function 1 31422 31772
YP_009013750.1 NC_023705_p21 hypothetical protein phrog_1736 minor tail protein tail 1 20007 20441
YP_009013734.1 NC_023705_p5 scaffold phrog_1757 unknown function unknown function 1 6188 6394
YP_009013768.1 NC_023705_p39 hypothetical protein phrog_7486 unknown function unknown function 1 31273 31422
YP_009013780.1 NC_023705_p51 hypothetical protein phrog_9043 unknown function unknown function 1 37719 38162
YP_009013789.1 NC_023705_p60 hypothetical protein phrog_38358 unknown function unknown function 1 41108 41272