| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023707 |
Definition |
Mycobacterium phage Turbido, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53169 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.28 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009013901.1 | NC_023707_p6 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2887 | 3357 |
| YP_009013943.1 | NC_023707_p48 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32557 | 32766 |
| YP_009013907.1 | NC_023707_p12 | LysB | phrog_102 | endolysin | lysis | 1 | 6895 | 7887 |
| YP_009013933.1 | NC_023707_p38 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 28352 | 28525 |
| YP_009013979.1 | NC_023707_p84 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47922 | 48677 |
| YP_009013923.1 | NC_023707_p28 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 19682 | 20698 |
| YP_009013949.1 | NC_023707_p54 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36521 | 37207 |
| YP_009013928.1 | NC_023707_p33 | integrase (Y-int) | phrog_1 | integrase | integration and excision | -1 | 25511 | 26644 |
| YP_009013909.1 | NC_023707_p14 | portal | phrog_104 | portal protein | head and packaging | 1 | 9697 | 11157 |
| YP_009013944.1 | NC_023707_p49 | ThyX-like | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32768 | 33493 |
| YP_009013945.1 | NC_023707_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33570 | 34088 |
| YP_009013976.1 | NC_023707_p81 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 47253 | 47486 |
| YP_009013940.1 | NC_023707_p45 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 31625 | 31957 |
| YP_009013898.1 | NC_023707_p3 | hypothetical protein | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1662 | 2252 |
| YP_009013941.1 | NC_023707_p46 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 31950 | 32138 |
| YP_009013939.1 | NC_023707_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29830 | 31617 |
| YP_009013969.1 | NC_023707_p74 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44656 | 45075 |
| YP_009013958.1 | NC_023707_p63 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 40154 | 40285 |
| YP_009013955.1 | NC_023707_p60 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39179 | 39580 |
| YP_009013988.1 | NC_023707_p93 | hypothetical protein | phrog_1617 | unknown function | unknown function | -1 | 50592 | 51473 |
| YP_009013919.1 | NC_023707_p24 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15594 | 16184 |
| YP_009013971.1 | NC_023707_p76 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 45956 | 46120 |
| YP_009013964.1 | NC_023707_p69 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 42894 | 43031 |
| YP_009013987.1 | NC_023707_p92 | hypothetical protein | phrog_6255 | unknown function | unknown function | -1 | 50323 | 50571 |
| YP_009013935.1 | NC_023707_p40 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28902 | 29165 |
| YP_009013921.1 | NC_023707_p26 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16296 | 16703 |
| YP_009013952.1 | NC_023707_p57 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38124 | 38450 |
| YP_009013915.1 | NC_023707_p20 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 14232 | 14429 |
| YP_009013938.1 | NC_023707_p43 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29580 | 29798 |
| YP_009013934.1 | NC_023707_p39 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28522 | 28905 |
| YP_009013910.1 | NC_023707_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11187 | 12038 |
| YP_009013967.1 | NC_023707_p72 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43487 | 43711 |
| YP_009013966.1 | NC_023707_p71 | hypothetical protein | phrog_666 | unknown function | unknown function | -1 | 43296 | 43490 |
| YP_009013902.1 | NC_023707_p7 | structural | phrog_1260 | minor tail protein | tail | 1 | 3442 | 4407 |
| YP_009013981.1 | NC_023707_p86 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 48822 | 49118 |
| YP_009013937.1 | NC_023707_p42 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 29353 | 29580 |
| YP_009013925.1 | NC_023707_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22484 | 22930 |
| YP_009013985.1 | NC_023707_p90 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49959 | 50126 |
| YP_009013975.1 | NC_023707_p80 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 46990 | 47256 |
| YP_009013926.1 | NC_023707_p31 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 22927 | 23265 |
| YP_009013972.1 | NC_023707_p77 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 46255 | 46416 |
| YP_009013905.1 | NC_023707_p10 | LysA | phrog_317 | endolysin | lysis | 1 | 5124 | 6437 |
| YP_009013897.1 | NC_023707_p2 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 652 | 1413 |
| YP_009013899.1 | NC_023707_p4 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 2249 | 2554 |
| YP_009013947.1 | NC_023707_p52 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36139 | 36342 |
| YP_009013974.1 | NC_023707_p79 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46673 | 46993 |
| YP_009013980.1 | NC_023707_p85 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48677 | 48811 |
| YP_009013916.1 | NC_023707_p21 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14426 | 14794 |
| YP_009013960.1 | NC_023707_p65 | HTH DNA binding domain | phrog_1123 | unknown function | unknown function | -1 | 41118 | 41375 |
| YP_009013977.1 | NC_023707_p82 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 47486 | 47614 |
| YP_009013920.1 | NC_023707_p25 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16296 | 17128 |
| YP_009013946.1 | NC_023707_p51 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34100 | 36139 |
| YP_009013896.1 | NC_023707_p1 | hypothetical protein | phrog_7736 | unknown function | unknown function | 1 | 340 | 456 |
| YP_009013913.1 | NC_023707_p18 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 13673 | 13855 |
| YP_009013942.1 | NC_023707_p47 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32138 | 32560 |
| YP_009013929.1 | NC_023707_p34 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 27025 | 27465 |
| YP_009013911.1 | NC_023707_p16 | scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 12090 | 12617 |
| YP_009013982.1 | NC_023707_p87 | hypothetical protein | phrog_2223 | unknown function | unknown function | -1 | 49183 | 49467 |
| YP_009013963.1 | NC_023707_p68 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42078 | 42884 |
| YP_009013950.1 | NC_023707_p55 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 37204 | 37353 |
| YP_009013912.1 | NC_023707_p17 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 12647 | 13603 |
| YP_009013936.1 | NC_023707_p41 | hypothetical protein | phrog_12687 | unknown function | unknown function | -1 | 29165 | 29356 |
| YP_009013932.1 | NC_023707_p37 | hypothetical protein | phrog_9463 | unknown function | unknown function | -1 | 28155 | 28352 |
| YP_009013957.1 | NC_023707_p62 | endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39715 | 40194 |
| YP_009013908.1 | NC_023707_p13 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7910 | 9697 |
| YP_009013959.1 | NC_023707_p64 | esterase/lipase | phrog_789 | esterase/lipase | other | -1 | 40282 | 41118 |
| YP_009013904.1 | NC_023707_p9 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 4966 | 5124 |
| YP_009013961.1 | NC_023707_p66 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41375 | 41605 |
| YP_009013948.1 | NC_023707_p53 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36339 | 36521 |
| YP_009013984.1 | NC_023707_p89 | hypothetical protein | phrog_12399 | unknown function | unknown function | -1 | 49846 | 49959 |
| YP_009013986.1 | NC_023707_p91 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 50123 | 50323 |
| YP_009013978.1 | NC_023707_p83 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47614 | 47922 |
| YP_009013956.1 | NC_023707_p61 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 39558 | 39689 |
| YP_009013951.1 | NC_023707_p56 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37357 | 38127 |
| YP_009013927.1 | NC_023707_p32 | minor tail subunit | phrog_737 | minor tail protein | tail | 1 | 23266 | 25470 |
| YP_009013924.1 | NC_023707_p29 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 20695 | 22467 |
| YP_009013989.1 | NC_023707_p94 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51612 | 51902 |
| YP_009013914.1 | NC_023707_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13858 | 14235 |
| YP_009013900.1 | NC_023707_p5 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2551 | 2847 |
| YP_009013922.1 | NC_023707_p27 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 17118 | 19661 |
| YP_009013973.1 | NC_023707_p78 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 46416 | 46673 |
| YP_009013970.1 | NC_023707_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45139 | 45726 |
| YP_009013906.1 | NC_023707_p11 | holin | phrog_526 | holin | lysis | 1 | 6434 | 6898 |
| YP_009013983.1 | NC_023707_p88 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49496 | 49849 |
| YP_009013931.1 | NC_023707_p36 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 27985 | 28155 |
| YP_009013968.1 | NC_023707_p73 | RecB-like | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43760 | 44659 |
| YP_009013903.1 | NC_023707_p8 | hypothetical protein | phrog_19718 | unknown function | unknown function | 1 | 4536 | 4823 |
| YP_009013918.1 | NC_023707_p23 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 15139 | 15576 |
| YP_009013953.1 | NC_023707_p58 | NrdH-like | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 38447 | 38719 |
| YP_009013962.1 | NC_023707_p67 | hypothetical protein | phrog_5101 | unknown function | unknown function | -1 | 41742 | 42044 |
| YP_009013917.1 | NC_023707_p22 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14794 | 15129 |
| YP_009013965.1 | NC_023707_p70 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43028 | 43267 |
| YP_009013954.1 | NC_023707_p59 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38719 | 39351 |
| YP_009013930.1 | NC_023707_p35 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 27512 | 27892 |