Genomic map of Mycobacterium phage Turbido (NC_023707)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023707
Definition
Mycobacterium phage Turbido, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
53169
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
63.28
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009013901.1 NC_023707_p6 hypothetical protein phrog_226 minor tail protein tail 1 2887 3357
YP_009013943.1 NC_023707_p48 hypothetical protein phrog_690 unknown function unknown function -1 32557 32766
YP_009013907.1 NC_023707_p12 LysB phrog_102 endolysin lysis 1 6895 7887
YP_009013933.1 NC_023707_p38 hypothetical protein phrog_542 unknown function unknown function -1 28352 28525
YP_009013979.1 NC_023707_p84 hypothetical protein phrog_421 unknown function unknown function -1 47922 48677
YP_009013923.1 NC_023707_p28 minor tail subunit phrog_106 minor tail protein tail 1 19682 20698
YP_009013949.1 NC_023707_p54 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36521 37207
YP_009013928.1 NC_023707_p33 integrase (Y-int) phrog_1 integrase integration and excision -1 25511 26644
YP_009013909.1 NC_023707_p14 portal phrog_104 portal protein head and packaging 1 9697 11157
YP_009013944.1 NC_023707_p49 ThyX-like phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 32768 33493
YP_009013945.1 NC_023707_p50 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33570 34088
YP_009013976.1 NC_023707_p81 hypothetical protein phrog_3351 unknown function unknown function -1 47253 47486
YP_009013940.1 NC_023707_p45 hypothetical protein phrog_2094 unknown function unknown function -1 31625 31957
YP_009013898.1 NC_023707_p3 hypothetical protein phrog_3895 ADP-ribosyltransferase exoenzyme toxin moron, auxiliary metabolic gene and host takeover 1 1662 2252
YP_009013941.1 NC_023707_p46 hypothetical protein phrog_3812 unknown function unknown function -1 31950 32138
YP_009013939.1 NC_023707_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29830 31617
YP_009013969.1 NC_023707_p74 hypothetical protein phrog_1562 unknown function unknown function -1 44656 45075
YP_009013958.1 NC_023707_p63 hypothetical protein phrog_2187 unknown function unknown function -1 40154 40285
YP_009013955.1 NC_023707_p60 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39179 39580
YP_009013988.1 NC_023707_p93 hypothetical protein phrog_1617 unknown function unknown function -1 50592 51473
YP_009013919.1 NC_023707_p24 major tail subunit phrog_117 major tail protein tail 1 15594 16184
YP_009013971.1 NC_023707_p76 hypothetical protein phrog_1173 unknown function unknown function -1 45956 46120
YP_009013964.1 NC_023707_p69 hypothetical protein phrog_2731 unknown function unknown function -1 42894 43031
YP_009013987.1 NC_023707_p92 hypothetical protein phrog_6255 unknown function unknown function -1 50323 50571
YP_009013935.1 NC_023707_p40 hypothetical protein phrog_2099 unknown function unknown function -1 28902 29165
YP_009013921.1 NC_023707_p26 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16296 16703
YP_009013952.1 NC_023707_p57 hypothetical protein phrog_474 phosphofructokinase other -1 38124 38450
YP_009013915.1 NC_023707_p20 hypothetical protein phrog_830 head-tail connector protein connector 1 14232 14429
YP_009013938.1 NC_023707_p43 hypothetical protein phrog_896 unknown function unknown function -1 29580 29798
YP_009013934.1 NC_023707_p39 hypothetical protein phrog_383 unknown function unknown function -1 28522 28905
YP_009013910.1 NC_023707_p15 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11187 12038
YP_009013967.1 NC_023707_p72 hypothetical protein phrog_642 unknown function unknown function -1 43487 43711
YP_009013966.1 NC_023707_p71 hypothetical protein phrog_666 unknown function unknown function -1 43296 43490
YP_009013902.1 NC_023707_p7 structural phrog_1260 minor tail protein tail 1 3442 4407
YP_009013981.1 NC_023707_p86 hypothetical protein phrog_3718 unknown function unknown function -1 48822 49118
YP_009013937.1 NC_023707_p42 hypothetical protein phrog_3283 unknown function unknown function -1 29353 29580
YP_009013925.1 NC_023707_p30 hypothetical protein phrog_352 minor tail protein tail 1 22484 22930
YP_009013985.1 NC_023707_p90 hypothetical protein phrog_519 unknown function unknown function -1 49959 50126
YP_009013975.1 NC_023707_p80 hypothetical protein phrog_1875 unknown function unknown function -1 46990 47256
YP_009013926.1 NC_023707_p31 hypothetical protein phrog_404 minor tail protein tail 1 22927 23265
YP_009013972.1 NC_023707_p77 hypothetical protein phrog_4294 unknown function unknown function -1 46255 46416
YP_009013905.1 NC_023707_p10 LysA phrog_317 endolysin lysis 1 5124 6437
YP_009013897.1 NC_023707_p2 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 652 1413
YP_009013899.1 NC_023707_p4 hypothetical protein phrog_4491 unknown function unknown function 1 2249 2554
YP_009013947.1 NC_023707_p52 hypothetical protein phrog_2046 unknown function unknown function -1 36139 36342
YP_009013974.1 NC_023707_p79 hypothetical protein phrog_1178 unknown function unknown function -1 46673 46993
YP_009013980.1 NC_023707_p85 hypothetical protein phrog_855 unknown function unknown function -1 48677 48811
YP_009013916.1 NC_023707_p21 hypothetical protein phrog_320 head closure Hc1 connector 1 14426 14794
YP_009013960.1 NC_023707_p65 HTH DNA binding domain phrog_1123 unknown function unknown function -1 41118 41375
YP_009013977.1 NC_023707_p82 hypothetical protein phrog_1477 unknown function unknown function -1 47486 47614
YP_009013920.1 NC_023707_p25 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16296 17128
YP_009013946.1 NC_023707_p51 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 34100 36139
YP_009013896.1 NC_023707_p1 hypothetical protein phrog_7736 unknown function unknown function 1 340 456
YP_009013913.1 NC_023707_p18 hypothetical protein phrog_748 head-tail connector protein connector 1 13673 13855
YP_009013942.1 NC_023707_p47 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 32138 32560
YP_009013929.1 NC_023707_p34 hypothetical protein phrog_733 excisionase integration and excision 1 27025 27465
YP_009013911.1 NC_023707_p16 scaffolding phrog_233 head scaffolding protein head and packaging 1 12090 12617
YP_009013982.1 NC_023707_p87 hypothetical protein phrog_2223 unknown function unknown function -1 49183 49467
YP_009013963.1 NC_023707_p68 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42078 42884
YP_009013950.1 NC_023707_p55 hypothetical protein phrog_2436 unknown function unknown function -1 37204 37353
YP_009013912.1 NC_023707_p17 major capsid phrog_10 major head protein head and packaging 1 12647 13603
YP_009013936.1 NC_023707_p41 hypothetical protein phrog_12687 unknown function unknown function -1 29165 29356
YP_009013932.1 NC_023707_p37 hypothetical protein phrog_9463 unknown function unknown function -1 28155 28352
YP_009013957.1 NC_023707_p62 endo VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39715 40194
YP_009013908.1 NC_023707_p13 terminase phrog_9 terminase large subunit head and packaging 1 7910 9697
YP_009013959.1 NC_023707_p64 esterase/lipase phrog_789 esterase/lipase other -1 40282 41118
YP_009013904.1 NC_023707_p9 hypothetical protein phrog_1087 unknown function unknown function 1 4966 5124
YP_009013961.1 NC_023707_p66 hypothetical protein phrog_397 unknown function unknown function -1 41375 41605
YP_009013948.1 NC_023707_p53 hypothetical protein phrog_499 unknown function unknown function -1 36339 36521
YP_009013984.1 NC_023707_p89 hypothetical protein phrog_12399 unknown function unknown function -1 49846 49959
YP_009013986.1 NC_023707_p91 hypothetical protein phrog_1946 unknown function unknown function -1 50123 50323
YP_009013978.1 NC_023707_p83 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47614 47922
YP_009013956.1 NC_023707_p61 hypothetical protein phrog_1370 unknown function unknown function -1 39558 39689
YP_009013951.1 NC_023707_p56 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 37357 38127
YP_009013927.1 NC_023707_p32 minor tail subunit phrog_737 minor tail protein tail 1 23266 25470
YP_009013924.1 NC_023707_p29 minor tail subunit phrog_110 minor tail protein tail 1 20695 22467
YP_009013989.1 NC_023707_p94 hypothetical protein phrog_1676 unknown function unknown function -1 51612 51902
YP_009013914.1 NC_023707_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13858 14235
YP_009013900.1 NC_023707_p5 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2551 2847
YP_009013922.1 NC_023707_p27 tapemeasure phrog_305 tail length tape measure protein tail 1 17118 19661
YP_009013973.1 NC_023707_p78 hypothetical protein phrog_4569 unknown function unknown function -1 46416 46673
YP_009013970.1 NC_023707_p75 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 45139 45726
YP_009013906.1 NC_023707_p11 holin phrog_526 holin lysis 1 6434 6898
YP_009013983.1 NC_023707_p88 hypothetical protein phrog_586 unknown function unknown function -1 49496 49849
YP_009013931.1 NC_023707_p36 Xis phrog_66 excisionase and transcriptional regulator integration and excision -1 27985 28155
YP_009013968.1 NC_023707_p73 RecB-like phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43760 44659
YP_009013903.1 NC_023707_p8 hypothetical protein phrog_19718 unknown function unknown function 1 4536 4823
YP_009013918.1 NC_023707_p23 hypothetical protein phrog_123 tail terminator connector 1 15139 15576
YP_009013953.1 NC_023707_p58 NrdH-like phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 38447 38719
YP_009013962.1 NC_023707_p67 hypothetical protein phrog_5101 unknown function unknown function -1 41742 42044
YP_009013917.1 NC_023707_p22 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14794 15129
YP_009013965.1 NC_023707_p70 hypothetical protein phrog_520 unknown function unknown function -1 43028 43267
YP_009013954.1 NC_023707_p59 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38719 39351
YP_009013930.1 NC_023707_p35 hypothetical protein phrog_549 unknown function unknown function 1 27512 27892