Genomic map of Mycobacterium phage RidgeCB (NC_023710)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023710
Definition
Mycobacterium phage RidgeCB, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
50844
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
63.95
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009014169.1 NC_023710_p1 hypothetical protein phrog_4649 unknown function unknown function 1 599 751
YP_009014227.1 NC_023710_p59 endo VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40120 40611
YP_009014200.1 NC_023710_p32 carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 25742 27226
YP_009014192.1 NC_023710_p24 tapemeasure phrog_305 tail length tape measure protein tail 1 16182 18662
YP_009014240.1 NC_023710_p72 immunity repressor phrog_20159 transcriptional repressor transcription regulation -1 44792 45253
YP_009014205.1 NC_023710_p37 integrase (S-int) phrog_95 integrase integration and excision 1 29192 30691
YP_009014239.1 NC_023710_p71 hypothetical protein phrog_1809 unknown function unknown function -1 44355 44750
YP_009014262.1 NC_023710_p94 hypothetical protein singleton unknown function unknown function 1 50449 50667
YP_009014191.1 NC_023710_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15371 15748
YP_009014244.1 NC_023710_p76 hypothetical protein phrog_1155 unknown function unknown function -1 46126 46314
YP_009014216.1 NC_023710_p48 hypothetical protein phrog_499 unknown function unknown function -1 35202 35384
YP_009014170.1 NC_023710_p2 HNH endonuclease domain phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 748 1044
YP_009014218.1 NC_023710_p50 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36159 36299
YP_009014234.1 NC_023710_p66 hypothetical protein phrog_520 unknown function unknown function -1 42233 42526
YP_009014222.1 NC_023710_p54 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38827 39408
YP_009014211.1 NC_023710_p43 hypothetical protein phrog_383 unknown function unknown function -1 32073 32429
YP_009014188.1 NC_023710_p20 hypothetical protein phrog_123 tail terminator connector 1 13943 14389
YP_009014208.1 NC_023710_p40 hypothetical protein phrog_2035 unknown function unknown function -1 31530 31700
YP_009014183.1 NC_023710_p15 major capsid phrog_10 major head protein head and packaging 1 11162 12181
YP_009014221.1 NC_023710_p53 hypothetical protein phrog_1167 phosphofructokinase other -1 38195 38830
YP_009014179.1 NC_023710_p11 terminase phrog_9 terminase large subunit head and packaging 1 6575 8263
YP_009014175.1 NC_023710_p7 hypothetical protein phrog_1718 tail protein tail 1 3641 3901
YP_009014202.1 NC_023710_p34 hypothetical protein phrog_1560 unknown function unknown function 1 27645 27836
YP_009014184.1 NC_023710_p16 hypothetical protein phrog_1857 head-tail connector protein connector 1 12260 12733
YP_009014258.1 NC_023710_p90 hypothetical protein phrog_11620 unknown function unknown function 1 49419 49559
YP_009014233.1 NC_023710_p65 hypothetical protein phrog_1705 unknown function unknown function -1 42114 42227
YP_009014178.1 NC_023710_p10 LysB phrog_102 endolysin lysis 1 5587 6555
YP_009014198.1 NC_023710_p30 hypothetical protein phrog_1397 unknown function unknown function 1 23571 23870
YP_009014210.1 NC_023710_p42 hypothetical protein phrog_1971 unknown function unknown function -1 31789 32076
YP_009014256.1 NC_023710_p88 hypothetical protein phrog_2985 unknown function unknown function 1 48978 49133
YP_009014213.1 NC_023710_p45 hypothetical protein phrog_542 unknown function unknown function -1 34328 34456
YP_009014201.1 NC_023710_p33 hypothetical protein phrog_644 unknown function unknown function 1 27235 27636
YP_009014251.1 NC_023710_p83 hypothetical protein phrog_932 unknown function unknown function -1 47441 47593
YP_009014253.1 NC_023710_p85 hypothetical protein phrog_5017 unknown function unknown function -1 48196 48528
YP_009014224.1 NC_023710_p56 hypothetical protein phrog_1783 unknown function unknown function -1 39691 39855
YP_009014230.1 NC_023710_p62 hypothetical protein phrog_6513 unknown function unknown function -1 40932 41123
YP_009014236.1 NC_023710_p68 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 42847 43029
YP_009014206.1 NC_023710_p38 hypothetical protein phrog_1966 unknown function unknown function -1 30812 31144
YP_009014245.1 NC_023710_p77 trans-sialidase phrog_12963 unknown function unknown function -1 46311 46547
YP_009014215.1 NC_023710_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34714 35205
YP_009014246.1 NC_023710_p78 hypothetical protein phrog_16402 unknown function unknown function -1 46544 46690
YP_009014177.1 NC_023710_p9 LysA phrog_317 endolysin lysis 1 4176 5597
YP_009014252.1 NC_023710_p84 hypothetical protein phrog_4631 unknown function unknown function -1 47590 47907
YP_009014261.1 NC_023710_p93 hypothetical protein phrog_13308 unknown function unknown function -1 50169 50441
YP_009014196.1 NC_023710_p28 hypothetical protein phrog_352 minor tail protein tail 1 22784 23230
YP_009014214.1 NC_023710_p46 hypothetical protein phrog_1781 unknown function unknown function -1 34453 34683
YP_009014185.1 NC_023710_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12733 13182
YP_009014231.1 NC_023710_p63 helicase, DnaB-like phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41123 41944
YP_009014181.1 NC_023710_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9699 10580
YP_009014194.1 NC_023710_p26 hypothetical protein phrog_1543 minor tail protein tail 1 20762 20944
YP_009014195.1 NC_023710_p27 minor tail protein phrog_110 minor tail protein tail 1 20944 22746
YP_009014203.1 NC_023710_p35 hypothetical protein phrog_754 minor tail protein tail 1 27836 28624
YP_009014182.1 NC_023710_p14 scaffolding phrog_233 head scaffolding protein head and packaging 1 10639 11151
YP_009014223.1 NC_023710_p55 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39197 39712
YP_009014247.1 NC_023710_p79 hypothetical protein phrog_9825 unknown function unknown function -1 46692 46826
YP_009014241.1 NC_023710_p73 hypothetical protein phrog_1720 unknown function unknown function -1 45190 45777
YP_009014173.1 NC_023710_p5 structural phrog_1197 tail protein tail 1 1846 2916
YP_009014174.1 NC_023710_p6 hypothetical protein phrog_553 minor tail protein tail 1 2935 3627
YP_009014248.1 NC_023710_p80 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 46827 47027
YP_009014189.1 NC_023710_p21 major tail subunit phrog_117 major tail protein tail 1 14398 15249
YP_009014212.1 NC_023710_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32458 34287
YP_009014171.1 NC_023710_p3 hypothetical protein phrog_226 minor tail protein tail 1 1079 1519
YP_009014220.1 NC_023710_p52 hypothetical protein phrog_1503 unknown function unknown function -1 38019 38198
YP_009014259.1 NC_023710_p91 hypothetical protein singleton unknown function unknown function -1 49556 49789
YP_009014209.1 NC_023710_p41 hypothetical protein phrog_1860 unknown function unknown function -1 31697 31792
YP_009014257.1 NC_023710_p89 hypothetical protein phrog_828 unknown function unknown function 1 49216 49422
YP_009014180.1 NC_023710_p12 portal phrog_104 portal protein head and packaging 1 8260 9702
YP_009014229.1 NC_023710_p61 NrdH-like phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 40681 40947
YP_009014249.1 NC_023710_p81 hypothetical protein phrog_11336 HNH endonuclease DNA, RNA and nucleotide metabolism -1 47024 47218
YP_009014254.1 NC_023710_p86 hypothetical protein phrog_5533 unknown function unknown function -1 48528 48713
YP_009014260.1 NC_023710_p92 hypothetical protein phrog_3574 unknown function unknown function 1 49870 50058
YP_009014242.1 NC_023710_p74 hypothetical protein phrog_1387 unknown function unknown function -1 45804 46007
YP_009014232.1 NC_023710_p64 hypothetical protein phrog_2507 unknown function unknown function -1 41944 42117
YP_009014255.1 NC_023710_p87 hypothetical protein phrog_2212 unknown function unknown function -1 48743 48862
YP_009014199.1 NC_023710_p31 minor tail subunit phrog_346 minor tail protein tail 1 23896 25749
YP_009014228.1 NC_023710_p60 hypothetical protein phrog_1019 unknown function unknown function -1 40598 40684
YP_009014250.1 NC_023710_p82 hypothetical protein phrog_8345 unknown function unknown function -1 47215 47421
YP_009014207.1 NC_023710_p39 hypothetical protein phrog_2387 nucleotide kinase other -1 31141 31533
YP_009014226.1 NC_023710_p58 hypothetical protein phrog_397 unknown function unknown function -1 39989 40123
YP_009014235.1 NC_023710_p67 hypothetical protein phrog_2184 unknown function unknown function -1 42523 42843
YP_009014204.1 NC_023710_p36 hypothetical protein phrog_411 unknown function unknown function 1 28745 29041
YP_009014225.1 NC_023710_p57 hypothetical protein phrog_13342 unknown function unknown function -1 39855 39992
YP_009014186.1 NC_023710_p18 hypothetical protein phrog_320 head closure Hc1 connector 1 13182 13544
YP_009014176.1 NC_023710_p8 hypothetical protein phrog_747 unknown function unknown function 1 3909 4166
YP_009014187.1 NC_023710_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13544 13939
YP_009014219.1 NC_023710_p51 phosphoesterase phrog_221 metallo-phosphoesterase other -1 36304 38022
YP_009014190.1 NC_023710_p22 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15371 16170
YP_009014217.1 NC_023710_p49 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35381 36166
YP_009014237.1 NC_023710_p69 RecB-like phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43056 43874
YP_009014172.1 NC_023710_p4 hypothetical protein phrog_7087 unknown function unknown function 1 1539 1829
YP_009014243.1 NC_023710_p75 hypothetical protein phrog_1155 unknown function unknown function -1 46004 46129
YP_009014193.1 NC_023710_p25 minor tail subunit phrog_106 minor tail protein tail 1 18686 20743
YP_009014197.1 NC_023710_p29 hypothetical protein phrog_981 minor tail protein tail 1 23227 23574
YP_009014238.1 NC_023710_p70 hypothetical protein phrog_1584 unknown function unknown function -1 44041 44358