| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023710 |
Definition |
Mycobacterium phage RidgeCB, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
50844 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.95 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009014169.1 | NC_023710_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 599 | 751 |
| YP_009014227.1 | NC_023710_p59 | endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40120 | 40611 |
| YP_009014200.1 | NC_023710_p32 | carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25742 | 27226 |
| YP_009014192.1 | NC_023710_p24 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16182 | 18662 |
| YP_009014240.1 | NC_023710_p72 | immunity repressor | phrog_20159 | transcriptional repressor | transcription regulation | -1 | 44792 | 45253 |
| YP_009014205.1 | NC_023710_p37 | integrase (S-int) | phrog_95 | integrase | integration and excision | 1 | 29192 | 30691 |
| YP_009014239.1 | NC_023710_p71 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 44355 | 44750 |
| YP_009014262.1 | NC_023710_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50449 | 50667 |
| YP_009014191.1 | NC_023710_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15371 | 15748 |
| YP_009014244.1 | NC_023710_p76 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 46126 | 46314 |
| YP_009014216.1 | NC_023710_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35202 | 35384 |
| YP_009014170.1 | NC_023710_p2 | HNH endonuclease domain | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 748 | 1044 |
| YP_009014218.1 | NC_023710_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36159 | 36299 |
| YP_009014234.1 | NC_023710_p66 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42233 | 42526 |
| YP_009014222.1 | NC_023710_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38827 | 39408 |
| YP_009014211.1 | NC_023710_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32073 | 32429 |
| YP_009014188.1 | NC_023710_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13943 | 14389 |
| YP_009014208.1 | NC_023710_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31530 | 31700 |
| YP_009014183.1 | NC_023710_p15 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 11162 | 12181 |
| YP_009014221.1 | NC_023710_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38195 | 38830 |
| YP_009014179.1 | NC_023710_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6575 | 8263 |
| YP_009014175.1 | NC_023710_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3641 | 3901 |
| YP_009014202.1 | NC_023710_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27645 | 27836 |
| YP_009014184.1 | NC_023710_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12260 | 12733 |
| YP_009014258.1 | NC_023710_p90 | hypothetical protein | phrog_11620 | unknown function | unknown function | 1 | 49419 | 49559 |
| YP_009014233.1 | NC_023710_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42114 | 42227 |
| YP_009014178.1 | NC_023710_p10 | LysB | phrog_102 | endolysin | lysis | 1 | 5587 | 6555 |
| YP_009014198.1 | NC_023710_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23571 | 23870 |
| YP_009014210.1 | NC_023710_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31789 | 32076 |
| YP_009014256.1 | NC_023710_p88 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 48978 | 49133 |
| YP_009014213.1 | NC_023710_p45 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 34328 | 34456 |
| YP_009014201.1 | NC_023710_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27235 | 27636 |
| YP_009014251.1 | NC_023710_p83 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 47441 | 47593 |
| YP_009014253.1 | NC_023710_p85 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 48196 | 48528 |
| YP_009014224.1 | NC_023710_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39691 | 39855 |
| YP_009014230.1 | NC_023710_p62 | hypothetical protein | phrog_6513 | unknown function | unknown function | -1 | 40932 | 41123 |
| YP_009014236.1 | NC_023710_p68 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42847 | 43029 |
| YP_009014206.1 | NC_023710_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 30812 | 31144 |
| YP_009014245.1 | NC_023710_p77 | trans-sialidase | phrog_12963 | unknown function | unknown function | -1 | 46311 | 46547 |
| YP_009014215.1 | NC_023710_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34714 | 35205 |
| YP_009014246.1 | NC_023710_p78 | hypothetical protein | phrog_16402 | unknown function | unknown function | -1 | 46544 | 46690 |
| YP_009014177.1 | NC_023710_p9 | LysA | phrog_317 | endolysin | lysis | 1 | 4176 | 5597 |
| YP_009014252.1 | NC_023710_p84 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 47590 | 47907 |
| YP_009014261.1 | NC_023710_p93 | hypothetical protein | phrog_13308 | unknown function | unknown function | -1 | 50169 | 50441 |
| YP_009014196.1 | NC_023710_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22784 | 23230 |
| YP_009014214.1 | NC_023710_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34453 | 34683 |
| YP_009014185.1 | NC_023710_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12733 | 13182 |
| YP_009014231.1 | NC_023710_p63 | helicase, DnaB-like | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41123 | 41944 |
| YP_009014181.1 | NC_023710_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9699 | 10580 |
| YP_009014194.1 | NC_023710_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20762 | 20944 |
| YP_009014195.1 | NC_023710_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20944 | 22746 |
| YP_009014203.1 | NC_023710_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 27836 | 28624 |
| YP_009014182.1 | NC_023710_p14 | scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 10639 | 11151 |
| YP_009014223.1 | NC_023710_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39197 | 39712 |
| YP_009014247.1 | NC_023710_p79 | hypothetical protein | phrog_9825 | unknown function | unknown function | -1 | 46692 | 46826 |
| YP_009014241.1 | NC_023710_p73 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 45190 | 45777 |
| YP_009014173.1 | NC_023710_p5 | structural | phrog_1197 | tail protein | tail | 1 | 1846 | 2916 |
| YP_009014174.1 | NC_023710_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 2935 | 3627 |
| YP_009014248.1 | NC_023710_p80 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46827 | 47027 |
| YP_009014189.1 | NC_023710_p21 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14398 | 15249 |
| YP_009014212.1 | NC_023710_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32458 | 34287 |
| YP_009014171.1 | NC_023710_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1079 | 1519 |
| YP_009014220.1 | NC_023710_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38019 | 38198 |
| YP_009014259.1 | NC_023710_p91 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49556 | 49789 |
| YP_009014209.1 | NC_023710_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31697 | 31792 |
| YP_009014257.1 | NC_023710_p89 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 49216 | 49422 |
| YP_009014180.1 | NC_023710_p12 | portal | phrog_104 | portal protein | head and packaging | 1 | 8260 | 9702 |
| YP_009014229.1 | NC_023710_p61 | NrdH-like | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40681 | 40947 |
| YP_009014249.1 | NC_023710_p81 | hypothetical protein | phrog_11336 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 47024 | 47218 |
| YP_009014254.1 | NC_023710_p86 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 48528 | 48713 |
| YP_009014260.1 | NC_023710_p92 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 49870 | 50058 |
| YP_009014242.1 | NC_023710_p74 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 45804 | 46007 |
| YP_009014232.1 | NC_023710_p64 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41944 | 42117 |
| YP_009014255.1 | NC_023710_p87 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 48743 | 48862 |
| YP_009014199.1 | NC_023710_p31 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 23896 | 25749 |
| YP_009014228.1 | NC_023710_p60 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40598 | 40684 |
| YP_009014250.1 | NC_023710_p82 | hypothetical protein | phrog_8345 | unknown function | unknown function | -1 | 47215 | 47421 |
| YP_009014207.1 | NC_023710_p39 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31141 | 31533 |
| YP_009014226.1 | NC_023710_p58 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39989 | 40123 |
| YP_009014235.1 | NC_023710_p67 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42523 | 42843 |
| YP_009014204.1 | NC_023710_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28745 | 29041 |
| YP_009014225.1 | NC_023710_p57 | hypothetical protein | phrog_13342 | unknown function | unknown function | -1 | 39855 | 39992 |
| YP_009014186.1 | NC_023710_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13182 | 13544 |
| YP_009014176.1 | NC_023710_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 3909 | 4166 |
| YP_009014187.1 | NC_023710_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13544 | 13939 |
| YP_009014219.1 | NC_023710_p51 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36304 | 38022 |
| YP_009014190.1 | NC_023710_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15371 | 16170 |
| YP_009014217.1 | NC_023710_p49 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35381 | 36166 |
| YP_009014237.1 | NC_023710_p69 | RecB-like | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43056 | 43874 |
| YP_009014172.1 | NC_023710_p4 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1539 | 1829 |
| YP_009014243.1 | NC_023710_p75 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 46004 | 46129 |
| YP_009014193.1 | NC_023710_p25 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 18686 | 20743 |
| YP_009014197.1 | NC_023710_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23227 | 23574 |
| YP_009014238.1 | NC_023710_p70 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 44041 | 44358 |