Genomic map of Yersinia phage Yep-phi (NC_023715)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023715
Definition
Yersinia phage Yep-phi, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Berlinvirus; Yersinia virus Yepf.
DB of origin
REFSEQ
Length
38616
Host Name
Yersinia pestis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
45
%GC
47.09
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009014830.1 NC_023715_p9 gp1.7 phrog_2585 nucleotide kinase other 1 7271 7585
YP_009014856.1 NC_023715_p35 internal virion protein B phrog_805 internal virion protein head and packaging 1 24986 25573
YP_009014866.1 NC_023715_p45 hypothetical protein phrog_30163 unknown function unknown function 1 37873 38121
YP_009014828.1 NC_023715_p7 gp1.5 phrog_10145 unknown function unknown function 1 6900 6980
YP_009014863.1 NC_023715_p42 hypothetical protein phrog_27102 unknown function unknown function 1 34653 35309
YP_009014864.1 NC_023715_p43 DNA maturase B phrog_38 terminase large subunit head and packaging 1 35325 37082
YP_009014841.1 NC_023715_p20 gp4.5 phrog_2254 unknown function unknown function 1 11742 12038
YP_009014848.1 NC_023715_p27 hypothetical protein phrog_1391 unknown function unknown function 1 16933 17214
YP_009014861.1 NC_023715_p40 DNA maturase A phrog_1351 terminase small subunit head and packaging 1 33903 34172
YP_009014853.1 NC_023715_p32 tail tubular protein A phrog_446 tail protein tail 1 21493 22083
YP_009014852.1 NC_023715_p31 major capsid protein phrog_267 major head protein head and packaging 1 20242 21285
YP_009014859.1 NC_023715_p38 tail fiber protein phrog_4242 tail fiber protein tail 1 31942 33651
YP_009014858.1 NC_023715_p37 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 27912 31859
YP_009014857.1 NC_023715_p36 internal virion protein C phrog_1339 internal virion protein head and packaging 1 25609 27888
YP_009014847.1 NC_023715_p26 gp6.5 phrog_1447 unknown function unknown function 1 16670 16915
YP_009014827.1 NC_023715_p6 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 5794 6822
YP_009014865.1 NC_023715_p44 hypothetical protein phrog_6254 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37113 37571
YP_009014845.1 NC_023715_p24 gp5.9 phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 15446 15625
YP_009014826.1 NC_023715_p5 dGTPase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 5406 5663
YP_009014837.1 NC_023715_p16 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9732 11441
YP_009014843.1 NC_023715_p22 gp5.5 phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 14947 15240
YP_009014850.1 NC_023715_p29 head to tail joining protein phrog_449 head-tail adaptor connector 1 17516 19123
YP_009014836.1 NC_023715_p15 gp3.8 phrog_32729 unknown function unknown function 1 9638 9721
YP_009014860.1 NC_023715_p39 holin phrog_920 holin lysis 1 33704 33910
YP_009014824.1 NC_023715_p3 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 2492 5143
YP_009014823.1 NC_023715_p2 protein kinase phrog_2828 serine-threonine kinase other 1 1291 2418
YP_009014833.1 NC_023715_p12 single stranded DNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7932 8639
YP_009014839.1 NC_023715_p18 gp4.2 phrog_5140 unknown function unknown function 1 11161 11523
YP_009014862.1 NC_023715_p41 endopeptidase phrog_1327 Rz-like spanin lysis 1 34271 34720
YP_009014844.1 NC_023715_p23 gp5.7 phrog_1334 unknown function unknown function 1 15240 15449
YP_009014831.1 NC_023715_p10 gp1.8 phrog_1312 unknown function unknown function 1 7578 7676
YP_009014851.1 NC_023715_p30 capsid assembly protein phrog_1052 head assembly head and packaging 1 19197 20111
YP_009014840.1 NC_023715_p19 gp4.3 phrog_1950 unknown function unknown function 1 11516 11728
YP_009014846.1 NC_023715_p25 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15622 16536
YP_009014834.1 NC_023715_p13 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 8659 9108
YP_009014822.1 NC_023715_p1 ABC transporter phrog_27091 unknown function unknown function 1 990 1220
YP_009014842.1 NC_023715_p21 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12133 14927
YP_009014849.1 NC_023715_p28 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17229 17501
YP_009014832.1 NC_023715_p11 host RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 7673 7864
YP_009014835.1 NC_023715_p14 amidase phrog_822 amidase lysis 1 9108 9563
YP_009014854.1 NC_023715_p33 tail tubular protein B phrog_457 tail protein tail 1 22110 24488
YP_009014825.1 NC_023715_p4 gp1.1 phrog_2490 unknown function unknown function 1 5257 5406
YP_009014855.1 NC_023715_p34 internal virion protein A phrog_308 internal virion protein head and packaging 1 24572 24982
YP_009014838.1 NC_023715_p17 DNA helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9930 11441
YP_009014829.1 NC_023715_p8 gp1.6 phrog_1777 unknown function unknown function 1 7008 7271