| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023715 |
Definition |
Yersinia phage Yep-phi, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Berlinvirus; Yersinia virus Yepf. |
DB of origin |
REFSEQ |
Length |
38616 |
Host Name |
Yersinia pestis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
47.09 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009014830.1 | NC_023715_p9 | gp1.7 | phrog_2585 | nucleotide kinase | other | 1 | 7271 | 7585 |
| YP_009014856.1 | NC_023715_p35 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 24986 | 25573 |
| YP_009014866.1 | NC_023715_p45 | hypothetical protein | phrog_30163 | unknown function | unknown function | 1 | 37873 | 38121 |
| YP_009014828.1 | NC_023715_p7 | gp1.5 | phrog_10145 | unknown function | unknown function | 1 | 6900 | 6980 |
| YP_009014863.1 | NC_023715_p42 | hypothetical protein | phrog_27102 | unknown function | unknown function | 1 | 34653 | 35309 |
| YP_009014864.1 | NC_023715_p43 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 35325 | 37082 |
| YP_009014841.1 | NC_023715_p20 | gp4.5 | phrog_2254 | unknown function | unknown function | 1 | 11742 | 12038 |
| YP_009014848.1 | NC_023715_p27 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 16933 | 17214 |
| YP_009014861.1 | NC_023715_p40 | DNA maturase A | phrog_1351 | terminase small subunit | head and packaging | 1 | 33903 | 34172 |
| YP_009014853.1 | NC_023715_p32 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 21493 | 22083 |
| YP_009014852.1 | NC_023715_p31 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20242 | 21285 |
| YP_009014859.1 | NC_023715_p38 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 31942 | 33651 |
| YP_009014858.1 | NC_023715_p37 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 27912 | 31859 |
| YP_009014857.1 | NC_023715_p36 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 25609 | 27888 |
| YP_009014847.1 | NC_023715_p26 | gp6.5 | phrog_1447 | unknown function | unknown function | 1 | 16670 | 16915 |
| YP_009014827.1 | NC_023715_p6 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 5794 | 6822 |
| YP_009014865.1 | NC_023715_p44 | hypothetical protein | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37113 | 37571 |
| YP_009014845.1 | NC_023715_p24 | gp5.9 | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 15446 | 15625 |
| YP_009014826.1 | NC_023715_p5 | dGTPase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 5406 | 5663 |
| YP_009014837.1 | NC_023715_p16 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9732 | 11441 |
| YP_009014843.1 | NC_023715_p22 | gp5.5 | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 14947 | 15240 |
| YP_009014850.1 | NC_023715_p29 | head to tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 17516 | 19123 |
| YP_009014836.1 | NC_023715_p15 | gp3.8 | phrog_32729 | unknown function | unknown function | 1 | 9638 | 9721 |
| YP_009014860.1 | NC_023715_p39 | holin | phrog_920 | holin | lysis | 1 | 33704 | 33910 |
| YP_009014824.1 | NC_023715_p3 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2492 | 5143 |
| YP_009014823.1 | NC_023715_p2 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 1291 | 2418 |
| YP_009014833.1 | NC_023715_p12 | single stranded DNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7932 | 8639 |
| YP_009014839.1 | NC_023715_p18 | gp4.2 | phrog_5140 | unknown function | unknown function | 1 | 11161 | 11523 |
| YP_009014862.1 | NC_023715_p41 | endopeptidase | phrog_1327 | Rz-like spanin | lysis | 1 | 34271 | 34720 |
| YP_009014844.1 | NC_023715_p23 | gp5.7 | phrog_1334 | unknown function | unknown function | 1 | 15240 | 15449 |
| YP_009014831.1 | NC_023715_p10 | gp1.8 | phrog_1312 | unknown function | unknown function | 1 | 7578 | 7676 |
| YP_009014851.1 | NC_023715_p30 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 19197 | 20111 |
| YP_009014840.1 | NC_023715_p19 | gp4.3 | phrog_1950 | unknown function | unknown function | 1 | 11516 | 11728 |
| YP_009014846.1 | NC_023715_p25 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15622 | 16536 |
| YP_009014834.1 | NC_023715_p13 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8659 | 9108 |
| YP_009014822.1 | NC_023715_p1 | ABC transporter | phrog_27091 | unknown function | unknown function | 1 | 990 | 1220 |
| YP_009014842.1 | NC_023715_p21 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12133 | 14927 |
| YP_009014849.1 | NC_023715_p28 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17229 | 17501 |
| YP_009014832.1 | NC_023715_p11 | host RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 7673 | 7864 |
| YP_009014835.1 | NC_023715_p14 | amidase | phrog_822 | amidase | lysis | 1 | 9108 | 9563 |
| YP_009014854.1 | NC_023715_p33 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 22110 | 24488 |
| YP_009014825.1 | NC_023715_p4 | gp1.1 | phrog_2490 | unknown function | unknown function | 1 | 5257 | 5406 |
| YP_009014855.1 | NC_023715_p34 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 24572 | 24982 |
| YP_009014838.1 | NC_023715_p17 | DNA helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9930 | 11441 |
| YP_009014829.1 | NC_023715_p8 | gp1.6 | phrog_1777 | unknown function | unknown function | 1 | 7008 | 7271 |