Genomic map of Mycobacterium virus Alma (NC_023716)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023716
Definition
Mycobacterium virus Alma, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
53177
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
96
%GC
62.46
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009014894.1 NC_023716_p28 hypothetical protein phrog_1543 minor tail protein tail 1 21544 21756
YP_009014948.1 NC_023716_p82 hypothetical protein phrog_363 DNA methyltransferase other -1 46748 47302
YP_009014884.1 NC_023716_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 14147 14524
YP_009014929.1 NC_023716_p63 hypothetical protein phrog_1498 unknown function unknown function -1 40094 40243
YP_009014945.1 NC_023716_p79 hypothetical protein phrog_8086 unknown function unknown function -1 45799 46038
YP_009014892.1 NC_023716_p26 tapemeasure phrog_305 tail length tape measure protein tail 1 17597 20506
YP_009014898.1 NC_023716_p32 minor tail phrog_737 minor tail protein tail 1 24420 26186
YP_009014881.1 NC_023716_p15 scaffold phrog_233 head scaffolding protein head and packaging 1 12274 12807
YP_009014949.1 NC_023716_p83 hypothetical protein phrog_3256 unknown function unknown function -1 47299 47664
YP_009014947.1 NC_023716_p81 hypothetical protein phrog_1008 DNA methyltransferase other -1 46282 46797
YP_009014878.1 NC_023716_p12 terminase phrog_9 terminase large subunit head and packaging 1 8116 9903
YP_009014950.1 NC_023716_p84 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47664 47927
YP_009014922.1 NC_023716_p56 hypothetical protein phrog_1167 phosphofructokinase other -1 37786 38259
YP_009014932.1 NC_023716_p66 hypothetical protein phrog_542 unknown function unknown function -1 40801 40956
YP_009014885.1 NC_023716_p19 hypothetical protein phrog_830 head-tail connector protein connector 1 14521 14718
YP_009014871.1 NC_023716_p5 hypothetical protein phrog_226 minor tail protein tail 1 2667 3140
YP_009014921.1 NC_023716_p55 hypothetical protein phrog_221 metallo-phosphoesterase other -1 37019 37789
YP_009014904.1 NC_023716_p38 hypothetical protein phrog_10331 DNA binding protein DNA, RNA and nucleotide metabolism -1 28233 28523
YP_009014870.1 NC_023716_p4 HNH phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2333 2626
YP_009014903.1 NC_023716_p37 hypothetical protein phrog_30799 unknown function unknown function -1 28048 28236
YP_009014882.1 NC_023716_p16 capsid phrog_10 major head protein head and packaging 1 12855 13814
YP_009014880.1 NC_023716_p14 protease phrog_193 head maturation protease head and packaging 1 11384 12244
YP_009014919.1 NC_023716_p53 hypothetical protein phrog_10515 unknown function unknown function -1 36213 36353
YP_009014956.1 NC_023716_p90 hypothetical protein phrog_519 unknown function unknown function -1 49601 49774
YP_009014893.1 NC_023716_p27 minor tail phrog_106 minor tail protein tail 1 20534 21547
YP_009014891.1 NC_023716_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16621 17016
YP_009014941.1 NC_023716_p75 hypothetical protein phrog_1173 unknown function unknown function -1 44925 45089
YP_009014939.1 NC_023716_p73 repressor phrog_1562 unknown function unknown function -1 43698 44144
YP_009014952.1 NC_023716_p86 hypothetical protein phrog_855 unknown function unknown function -1 48705 48839
YP_009014873.1 NC_023716_p7 hypothetical protein phrog_819 tail protein tail 1 4190 5221
YP_009014902.1 NC_023716_p36 ParB phrog_2639 Arc-like repressor transcription regulation 1 27635 27904
YP_009014946.1 NC_023716_p80 hypothetical protein phrog_1342 unknown function unknown function -1 46035 46262
YP_009014868.1 NC_023716_p2 hypothetical protein phrog_5234 unknown function unknown function 1 1051 2109
YP_009014918.1 NC_023716_p52 hypothetical protein phrog_499 unknown function unknown function -1 35953 36216
YP_009014912.1 NC_023716_p46 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31834 32160
YP_009014867.1 NC_023716_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 380 1159
YP_009014872.1 NC_023716_p6 minor tail phrog_1260 minor tail protein tail 1 3228 4190
YP_009014876.1 NC_023716_p10 LysA phrog_317 endolysin lysis 1 6153 7733
YP_009014924.1 NC_023716_p58 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38528 38989
YP_009014901.1 NC_023716_p35 ParA phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 27061 27642
YP_009014897.1 NC_023716_p31 hypothetical protein phrog_404 minor tail protein tail 1 24051 24419
YP_009014874.1 NC_023716_p8 hypothetical protein phrog_356 minor tail protein tail 1 5225 5875
YP_009014962.1 NC_023716_p96 hypothetical protein phrog_1676 unknown function unknown function -1 51417 51713
YP_009014957.1 NC_023716_p91 hypothetical protein phrog_10771 unknown function unknown function -1 49771 50142
YP_009014910.1 NC_023716_p44 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29702 31495
YP_009014907.1 NC_023716_p41 hypothetical protein phrog_383 unknown function unknown function -1 28904 29275
YP_009014920.1 NC_023716_p54 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36350 37015
YP_009014936.1 NC_023716_p70 hypothetical protein phrog_520 unknown function unknown function -1 42323 42598
YP_009014899.1 NC_023716_p33 hypothetical protein phrog_2570 unknown function unknown function 1 26253 26447
YP_009014900.1 NC_023716_p34 hypothetical protein phrog_13533 unknown function unknown function 1 26568 26876
YP_009014958.1 NC_023716_p92 hypothetical protein phrog_3831 unknown function unknown function -1 50145 50375
YP_009014960.1 NC_023716_p94 hypothetical protein phrog_2499 unknown function unknown function -1 51096 51299
YP_009014926.1 NC_023716_p60 hypothetical protein phrog_18676 unknown function unknown function -1 39371 39511
YP_009014877.1 NC_023716_p11 holin phrog_526 holin lysis 1 7730 8116
YP_009014915.1 NC_023716_p49 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33188 33745
YP_009014935.1 NC_023716_p69 hypothetical protein phrog_9978 unknown function unknown function -1 42162 42326
YP_009014906.1 NC_023716_p40 hypothetical protein phrog_9466 unknown function unknown function -1 28704 28907
YP_009014913.1 NC_023716_p47 hypothetical protein phrog_690 unknown function unknown function -1 32157 32372
YP_009014931.1 NC_023716_p65 hypothetical protein phrog_397 unknown function unknown function -1 40401 40634
YP_009014887.1 NC_023716_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15083 15472
YP_009014895.1 NC_023716_p29 minor tail phrog_110 minor tail protein tail 1 21753 23546
YP_009014937.1 NC_023716_p71 hypothetical protein phrog_642 unknown function unknown function -1 42610 42828
YP_009014869.1 NC_023716_p3 hypothetical protein phrog_10336 unknown function unknown function 1 2109 2336
YP_009014959.1 NC_023716_p93 hypothetical protein phrog_1392 unknown function unknown function -1 50383 51093
YP_009014875.1 NC_023716_p9 hypothetical protein phrog_1087 unknown function unknown function 1 6013 6153
YP_009014879.1 NC_023716_p13 portal phrog_104 portal protein head and packaging 1 9900 11387
YP_009014925.1 NC_023716_p59 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38991 39374
YP_009014954.1 NC_023716_p88 hypothetical protein phrog_586 unknown function unknown function -1 49117 49473
YP_009014942.1 NC_023716_p76 hypothetical protein phrog_7865 unknown function unknown function -1 45120 45290
YP_009014890.1 NC_023716_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16621 17468
YP_009014938.1 NC_023716_p72 RecB-like nuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42859 43701
YP_009014911.1 NC_023716_p45 hypothetical protein phrog_2094 unknown function unknown function -1 31502 31834
YP_009014909.1 NC_023716_p43 hypothetical protein phrog_896 unknown function unknown function -1 29432 29671
YP_009014923.1 NC_023716_p57 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 38256 38528
YP_009014927.1 NC_023716_p61 endoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39533 39997
YP_009014934.1 NC_023716_p68 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41352 42161
YP_009014951.1 NC_023716_p85 hypothetical protein phrog_421 unknown function unknown function -1 47942 48703
YP_009014883.1 NC_023716_p17 hypothetical protein phrog_3101 unknown function unknown function 1 13920 14144
YP_009014905.1 NC_023716_p39 hypothetical protein phrog_10689 unknown function unknown function -1 28504 28716
YP_009014933.1 NC_023716_p67 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40953 41339
YP_009014917.1 NC_023716_p51 hypothetical protein phrog_2046 unknown function unknown function -1 35778 35981
YP_009014928.1 NC_023716_p62 hypothetical protein phrog_9791 unknown function unknown function -1 39942 40097
YP_009014889.1 NC_023716_p23 major tail/coat protein phrog_117 major tail protein tail 1 15907 16503
YP_009014961.1 NC_023716_p95 hypothetical protein phrog_1445 unknown function unknown function -1 51303 51386
YP_009014943.1 NC_023716_p77 hypothetical protein phrog_5531 unknown function unknown function -1 45297 45515
YP_009014953.1 NC_023716_p87 hypothetical protein phrog_3718 unknown function unknown function -1 48845 49120
YP_009014888.1 NC_023716_p22 hypothetical protein phrog_123 tail terminator connector 1 15469 15891
YP_009014886.1 NC_023716_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 14715 15083
YP_009014914.1 NC_023716_p48 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 32374 33078
YP_009014908.1 NC_023716_p42 hypothetical protein phrog_7968 unknown function unknown function -1 29268 29432
YP_009014916.1 NC_023716_p50 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 33757 35778
YP_009014955.1 NC_023716_p89 hypothetical protein phrog_15034 unknown function unknown function -1 49470 49601
YP_009014944.1 NC_023716_p78 hypothetical protein phrog_3963 unknown function unknown function -1 45518 45799
YP_009014930.1 NC_023716_p64 hypothetical protein phrog_8981 unknown function unknown function -1 40228 40404
YP_009014940.1 NC_023716_p74 repressor phrog_357 transcriptional repressor transcription regulation -1 44141 44677
YP_009014896.1 NC_023716_p30 hypothetical protein phrog_352 minor tail protein tail 1 23561 24049