| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023724 |
Definition |
Mycobacterium phage Larva, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
62991 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
65.29 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009016404.1 | NC_023724_p40 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 32871 | 33722 |
| YP_009016454.1 | NC_023724_p90 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 58791 | 59036 |
| YP_009016370.1 | NC_023724_p6 | portal | phrog_104 | portal protein | head and packaging | 1 | 2529 | 4067 |
| YP_009016388.1 | NC_023724_p24 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20760 | 21077 |
| YP_009016372.1 | NC_023724_p8 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6888 | 7088 |
| YP_009016374.1 | NC_023724_p10 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 7861 | 8793 |
| YP_009016369.1 | NC_023724_p5 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1090 | 2517 |
| YP_009016414.1 | NC_023724_p50 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 38587 | 38865 |
| YP_009016398.1 | NC_023724_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28797 | 30011 |
| YP_009016440.1 | NC_023724_p76 | RtcB | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 51909 | 53114 |
| YP_009016410.1 | NC_023724_p46 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 36146 | 36748 |
| YP_009016380.1 | NC_023724_p16 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11076 | 11962 |
| YP_009016386.1 | NC_023724_p22 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 19169 | 19678 |
| YP_009016391.1 | NC_023724_p27 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23878 | 24942 |
| YP_009016459.1 | NC_023724_p95 | hypothetical protein | phrog_10342 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 61188 | 61580 |
| YP_009016406.1 | NC_023724_p42 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34386 | 34733 |
| YP_009016383.1 | NC_023724_p19 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 16169 | 17299 |
| YP_009016424.1 | NC_023724_p60 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 41955 | 42203 |
| YP_009016401.1 | NC_023724_p37 | hypothetical protein | phrog_21189 | hydrolase | other | -1 | 30940 | 31071 |
| YP_009016452.1 | NC_023724_p88 | hypothetical protein | phrog_10190 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57490 | 57888 |
| YP_009016417.1 | NC_023724_p53 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 39273 | 39545 |
| YP_009016435.1 | NC_023724_p71 | hypothetical protein | phrog_5135 | unknown function | unknown function | 1 | 49851 | 50186 |
| YP_009016437.1 | NC_023724_p73 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 50393 | 50875 |
| YP_009016447.1 | NC_023724_p83 | hypothetical protein | phrog_19470 | unknown function | unknown function | 1 | 55610 | 55762 |
| YP_009016416.1 | NC_023724_p52 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 39040 | 39204 |
| YP_009016418.1 | NC_023724_p54 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 39542 | 39709 |
| YP_009016436.1 | NC_023724_p72 | hypothetical protein | phrog_2869 | unknown function | unknown function | 1 | 50174 | 50380 |
| YP_009016443.1 | NC_023724_p79 | hypothetical protein | phrog_16134 | unknown function | unknown function | 1 | 54118 | 54402 |
| YP_009016430.1 | NC_023724_p66 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 47423 | 48277 |
| YP_009016434.1 | NC_023724_p70 | hypothetical protein | phrog_7217 | unknown function | unknown function | 1 | 49603 | 49854 |
| YP_009016394.1 | NC_023724_p30 | LysB | phrog_102 | endolysin | lysis | 1 | 27026 | 27787 |
| YP_009016415.1 | NC_023724_p51 | hypothetical protein | phrog_10462 | unknown function | unknown function | 1 | 38862 | 39017 |
| YP_009016421.1 | NC_023724_p57 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 40784 | 40996 |
| YP_009016426.1 | NC_023724_p62 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42688 | 43068 |
| YP_009016390.1 | NC_023724_p26 | hypothetical protein | phrog_10753 | unknown function | unknown function | 1 | 23575 | 23859 |
| YP_009016392.1 | NC_023724_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24969 | 25367 |
| YP_009016399.1 | NC_023724_p35 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 30011 | 30235 |
| YP_009016431.1 | NC_023724_p67 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 48347 | 48556 |
| YP_009016427.1 | NC_023724_p63 | hypothetical protein | phrog_10729 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 43099 | 45267 |
| YP_009016409.1 | NC_023724_p45 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 35352 | 36107 |
| YP_009016439.1 | NC_023724_p75 | hypothetical protein | phrog_9980 | unknown function | unknown function | 1 | 51175 | 51756 |
| YP_009016382.1 | NC_023724_p18 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 11980 | 16092 |
| YP_009016397.1 | NC_023724_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28559 | 28810 |
| YP_009016371.1 | NC_023724_p7 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4084 | 6891 |
| YP_009016403.1 | NC_023724_p39 | hypothetical protein | phrog_24177 | unknown function | unknown function | 1 | 32705 | 32851 |
| YP_009016438.1 | NC_023724_p74 | hypothetical protein | phrog_8324 | unknown function | unknown function | 1 | 50872 | 51105 |
| YP_009016378.1 | NC_023724_p14 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9904 | 10326 |
| YP_009016387.1 | NC_023724_p23 | minor tail subunit | phrog_1565 | minor tail protein | tail | 1 | 19675 | 20760 |
| YP_009016423.1 | NC_023724_p59 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 41253 | 41846 |
| YP_009016441.1 | NC_023724_p77 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 53119 | 53481 |
| YP_009016413.1 | NC_023724_p49 | hypothetical protein | phrog_9124 | unknown function | unknown function | 1 | 38366 | 38590 |
| YP_009016412.1 | NC_023724_p48 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 38025 | 38363 |
| YP_009016419.1 | NC_023724_p55 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39706 | 40566 |
| YP_009016445.1 | NC_023724_p81 | hypothetical protein | phrog_980 | unknown function | unknown function | 1 | 55057 | 55344 |
| YP_009016379.1 | NC_023724_p15 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10368 | 10979 |
| YP_009016389.1 | NC_023724_p25 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 21061 | 23565 |
| YP_009016384.1 | NC_023724_p20 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 17347 | 18558 |
| YP_009016400.1 | NC_023724_p36 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30358 | 30822 |
| YP_009016450.1 | NC_023724_p86 | hypothetical protein | phrog_20186 | unknown function | unknown function | 1 | 56967 | 57146 |
| YP_009016420.1 | NC_023724_p56 | hypothetical protein | phrog_10500 | unknown function | unknown function | 1 | 40563 | 40787 |
| YP_009016448.1 | NC_023724_p84 | hypothetical protein | phrog_19954 | unknown function | unknown function | 1 | 55797 | 55964 |
| YP_009016425.1 | NC_023724_p61 | hypothetical protein | phrog_10696 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42200 | 42691 |
| YP_009016395.1 | NC_023724_p31 | holin | phrog_565 | holin | lysis | 1 | 27784 | 28236 |
| YP_009016407.1 | NC_023724_p43 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 34740 | 35030 |
| YP_009016381.1 | NC_023724_p17 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11076 | 11567 |
| YP_009016451.1 | NC_023724_p87 | hypothetical protein | phrog_9985 | unknown function | unknown function | 1 | 57210 | 57488 |
| YP_009016442.1 | NC_023724_p78 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 53481 | 54125 |
| YP_009016367.1 | NC_023724_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 418 | 513 |
| YP_009016461.1 | NC_023724_p97 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62571 | 62876 |
| YP_009016385.1 | NC_023724_p21 | hypothetical protein | phrog_20962 | minor tail protein | tail | 1 | 18635 | 19168 |
| YP_009016375.1 | NC_023724_p11 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8924 | 9307 |
| YP_009016393.1 | NC_023724_p29 | LysA | phrog_317 | endolysin | lysis | 1 | 25395 | 27029 |
| YP_009016396.1 | NC_023724_p32 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28233 | 28562 |
| YP_009016368.1 | NC_023724_p4 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 738 | 1097 |
| YP_009016429.1 | NC_023724_p65 | RusA | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47058 | 47423 |
| YP_009016460.1 | NC_023724_p96 | hypothetical protein | phrog_12460 | unknown function | unknown function | 1 | 62105 | 62515 |
| YP_009016433.1 | NC_023724_p69 | regulator | phrog_2342 | unknown function | unknown function | 1 | 48752 | 49606 |
| YP_009016376.1 | NC_023724_p12 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 9307 | 9669 |
| YP_009016411.1 | NC_023724_p47 | DNA pol III | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 36790 | 37974 |
| YP_009016456.1 | NC_023724_p92 | hypothetical protein | phrog_6842 | unknown function | unknown function | 1 | 60240 | 60572 |
| YP_009016453.1 | NC_023724_p89 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 58023 | 58709 |
| YP_009016377.1 | NC_023724_p13 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9641 | 9907 |
| YP_009016444.1 | NC_023724_p80 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 54395 | 55066 |
| YP_009016402.1 | NC_023724_p38 | integrase, S-int | phrog_95 | integrase | integration and excision | 1 | 31141 | 32586 |
| YP_009016365.1 | NC_023724_p1 | hypothetical protein | phrog_10556 | unknown function | unknown function | 1 | 55 | 303 |
| YP_009016446.1 | NC_023724_p82 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 55305 | 55484 |
| YP_009016405.1 | NC_023724_p41 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33849 | 34253 |
| YP_009016422.1 | NC_023724_p58 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 40993 | 41172 |
| YP_009016449.1 | NC_023724_p85 | queuine tRNA-ribosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56016 | 56900 |
| YP_009016366.1 | NC_023724_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 300 | 473 |
| YP_009016428.1 | NC_023724_p64 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 45264 | 46979 |
| YP_009016432.1 | NC_023724_p68 | hypothetical protein | phrog_11424 | unknown function | unknown function | 1 | 48591 | 48755 |
| YP_009016408.1 | NC_023724_p44 | hypothetical protein | phrog_11593 | unknown function | unknown function | 1 | 35108 | 35260 |
| YP_009016458.1 | NC_023724_p94 | hypothetical protein | phrog_38546 | unknown function | unknown function | 1 | 61037 | 61198 |
| YP_009016455.1 | NC_023724_p91 | hypothetical protein | phrog_7638 | unknown function | unknown function | 1 | 59154 | 60029 |
| YP_009016457.1 | NC_023724_p93 | hypothetical protein | phrog_8588 | unknown function | unknown function | 1 | 60677 | 60988 |
| YP_009016373.1 | NC_023724_p9 | scaffolding | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7222 | 7788 |