| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023726 |
Definition |
Mycobacterium phage Euphoria, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53597 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.67 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009016780.1 | NC_023726_p85 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49109 | 49237 |
| YP_009016786.1 | NC_023726_p91 | hypothetical protein | phrog_36632 | unknown function | unknown function | -1 | 51996 | 52427 |
| YP_009016762.1 | NC_023726_p67 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42680 | 42862 |
| YP_009016787.1 | NC_023726_p92 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 52440 | 52790 |
| YP_009016737.1 | NC_023726_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 31925 | 32305 |
| YP_009016758.1 | NC_023726_p63 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41768 | 41953 |
| YP_009016766.1 | NC_023726_p71 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 45056 | 45517 |
| YP_009016719.1 | NC_023726_p24 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16340 | 18808 |
| YP_009016741.1 | NC_023726_p46 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34914 | 35099 |
| YP_009016730.1 | NC_023726_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28029 | 28874 |
| YP_009016728.1 | NC_023726_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27428 | 27829 |
| YP_009016749.1 | NC_023726_p54 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39172 | 39336 |
| YP_009016702.1 | NC_023726_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4062 | 4322 |
| YP_009016714.1 | NC_023726_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13717 | 14112 |
| YP_009016713.1 | NC_023726_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13355 | 13717 |
| YP_009016721.1 | NC_023726_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20908 | 21090 |
| YP_009016789.1 | NC_023726_p94 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 52985 | 53188 |
| YP_009016729.1 | NC_023726_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27838 | 28029 |
| YP_009016734.1 | NC_023726_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31376 | 31555 |
| YP_009016698.1 | NC_023726_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1067 | 1501 |
| YP_009016753.1 | NC_023726_p58 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40026 | 40112 |
| YP_009016735.1 | NC_023726_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31543 | 31638 |
| YP_009016777.1 | NC_023726_p82 | hypothetical protein | phrog_12963 | unknown function | unknown function | -1 | 48428 | 48664 |
| YP_009016703.1 | NC_023726_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4330 | 4587 |
| YP_009016745.1 | NC_023726_p50 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37740 | 37919 |
| YP_009016768.1 | NC_023726_p73 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 45620 | 45787 |
| YP_009016765.1 | NC_023726_p70 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 44013 | 44720 |
| YP_009016751.1 | NC_023726_p56 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39404 | 39547 |
| YP_009016755.1 | NC_023726_p60 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40552 | 40818 |
| YP_009016750.1 | NC_023726_p55 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 39336 | 39407 |
| YP_009016723.1 | NC_023726_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22930 | 23376 |
| YP_009016727.1 | NC_023726_p32 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25935 | 27419 |
| YP_009016767.1 | NC_023726_p72 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 45514 | 45627 |
| YP_009016756.1 | NC_023726_p61 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40818 | 41639 |
| YP_009016716.1 | NC_023726_p21 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14571 | 15419 |
| YP_009016738.1 | NC_023726_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32302 | 34128 |
| YP_009016775.1 | NC_023726_p80 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 48043 | 48246 |
| YP_009016704.1 | NC_023726_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4597 | 6018 |
| YP_009016711.1 | NC_023726_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12646 | 12906 |
| YP_009016740.1 | NC_023726_p45 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34426 | 34917 |
| YP_009016763.1 | NC_023726_p68 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42889 | 43689 |
| YP_009016769.1 | NC_023726_p74 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45784 | 46101 |
| YP_009016739.1 | NC_023726_p44 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34165 | 34395 |
| YP_009016699.1 | NC_023726_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1673 | 1984 |
| YP_009016746.1 | NC_023726_p51 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37916 | 38314 |
| YP_009016770.1 | NC_023726_p75 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46098 | 46502 |
| YP_009016788.1 | NC_023726_p93 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 52793 | 52885 |
| YP_009016708.1 | NC_023726_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10120 | 11001 |
| YP_009016776.1 | NC_023726_p81 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48243 | 48431 |
| YP_009016761.1 | NC_023726_p66 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42356 | 42676 |
| YP_009016757.1 | NC_023726_p62 | hypothetical protein | phrog_31337 | unknown function | unknown function | -1 | 41662 | 41778 |
| YP_009016779.1 | NC_023726_p84 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48945 | 49112 |
| YP_009016696.1 | NC_023726_p1 | hypothetical protein | phrog_21009 | unknown function | unknown function | 1 | 600 | 755 |
| YP_009016736.1 | NC_023726_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31635 | 31928 |
| YP_009016785.1 | NC_023726_p90 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 51682 | 51996 |
| YP_009016744.1 | NC_023726_p49 | RDF | phrog_221 | metallo-phosphoesterase | other | -1 | 36025 | 37743 |
| YP_009016710.1 | NC_023726_p15 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 11582 | 12589 |
| YP_009016718.1 | NC_023726_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15528 | 15905 |
| YP_009016783.1 | NC_023726_p88 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 50706 | 50990 |
| YP_009016748.1 | NC_023726_p53 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38783 | 39193 |
| YP_009016725.1 | NC_023726_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23717 | 24064 |
| YP_009016726.1 | NC_023726_p31 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 24089 | 25942 |
| YP_009016705.1 | NC_023726_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6008 | 6976 |
| YP_009016759.1 | NC_023726_p64 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 41950 | 42069 |
| YP_009016700.1 | NC_023726_p5 | structural | phrog_1197 | tail protein | tail | 1 | 2267 | 3337 |
| YP_009016731.1 | NC_023726_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28995 | 29279 |
| YP_009016724.1 | NC_023726_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23373 | 23720 |
| YP_009016706.1 | NC_023726_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6996 | 8684 |
| YP_009016747.1 | NC_023726_p52 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38311 | 38955 |
| YP_009016707.1 | NC_023726_p12 | portal | phrog_104 | portal protein | head and packaging | 1 | 8681 | 10123 |
| YP_009016778.1 | NC_023726_p83 | hypothetical protein | phrog_16402 | unknown function | unknown function | -1 | 48661 | 48807 |
| YP_009016781.1 | NC_023726_p86 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 49259 | 49408 |
| YP_009016772.1 | NC_023726_p77 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47309 | 47608 |
| YP_009016771.1 | NC_023726_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46535 | 47047 |
| YP_009016722.1 | NC_023726_p27 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 21090 | 22892 |
| YP_009016760.1 | NC_023726_p65 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42066 | 42359 |
| YP_009016754.1 | NC_023726_p59 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 40109 | 40555 |
| YP_009016733.1 | NC_023726_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31107 | 31379 |
| YP_009016709.1 | NC_023726_p14 | scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 11059 | 11571 |
| YP_009016720.1 | NC_023726_p25 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 18832 | 20889 |
| YP_009016784.1 | NC_023726_p89 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 51284 | 51439 |
| YP_009016782.1 | NC_023726_p87 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49890 | 50663 |
| YP_009016715.1 | NC_023726_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14116 | 14562 |
| YP_009016701.1 | NC_023726_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3347 | 4048 |
| YP_009016732.1 | NC_023726_p37 | integrase (S-int) | phrog_95 | integrase | integration and excision | 1 | 29484 | 30986 |
| YP_009016712.1 | NC_023726_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12906 | 13355 |
| YP_009016697.1 | NC_023726_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 736 | 1032 |
| YP_009016764.1 | NC_023726_p69 | hypothetical protein | phrog_8167 | unknown function | unknown function | -1 | 43689 | 43997 |
| YP_009016774.1 | NC_023726_p79 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47777 | 48046 |
| YP_009016742.1 | NC_023726_p47 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35096 | 35887 |
| YP_009016773.1 | NC_023726_p78 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 47601 | 47780 |
| YP_009016743.1 | NC_023726_p48 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35880 | 36020 |
| YP_009016717.1 | NC_023726_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15528 | 16327 |
| YP_009016752.1 | NC_023726_p57 | endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39566 | 40039 |