| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023728 |
Definition |
Mycobacterium phage DeadP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
56461 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
106 |
%GC |
61.55 |
Number of singletons |
2 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009016912.1 | NC_023728_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23395 | 23649 |
| YP_009016918.1 | NC_023728_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26058 | 26225 |
| YP_009016905.1 | NC_023728_p15 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 13138 | 14769 |
| YP_009016963.1 | NC_023728_p73 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 45281 | 45451 |
| YP_009016948.1 | NC_023728_p58 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 38932 | 39159 |
| YP_009016985.1 | NC_023728_p95 | MerR domain | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 51561 | 51785 |
| YP_009016982.1 | NC_023728_p92 | hypothetical protein | phrog_7643 | unknown function | unknown function | 1 | 50374 | 50712 |
| YP_009016949.1 | NC_023728_p59 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 39156 | 39872 |
| YP_009016978.1 | NC_023728_p88 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 49580 | 49771 |
| YP_009016896.1 | NC_023728_p6 | major capsid | phrog_267 | major head protein | head and packaging | 1 | 5062 | 5883 |
| YP_009016973.1 | NC_023728_p83 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 48387 | 48512 |
| YP_009016894.1 | NC_023728_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_009016960.1 | NC_023728_p70 | AAA ATPase | phrog_1366 | unknown function | unknown function | 1 | 43847 | 44728 |
| YP_009016989.1 | NC_023728_p99 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 52566 | 52808 |
| YP_009016990.1 | NC_023728_p100 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 52801 | 52962 |
| YP_009016988.1 | NC_023728_p98 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 52156 | 52569 |
| YP_009016935.1 | NC_023728_p45 | hypothetical protein | phrog_20124 | unknown function | unknown function | -1 | 32191 | 32331 |
| YP_009016981.1 | NC_023728_p91 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 50240 | 50377 |
| YP_009016958.1 | NC_023728_p68 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 43381 | 43611 |
| YP_009016909.1 | NC_023728_p19 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19964 | 21850 |
| YP_009016924.1 | NC_023728_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29319 | 29552 |
| YP_009016903.1 | NC_023728_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8577 | 9128 |
| YP_009016944.1 | NC_023728_p54 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 37612 | 37848 |
| YP_009016979.1 | NC_023728_p89 | hypothetical protein | phrog_6540 | unknown function | unknown function | 1 | 49768 | 50064 |
| YP_009016974.1 | NC_023728_p84 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48685 | 49017 |
| YP_009016968.1 | NC_023728_p78 | hypothetical protein | phrog_14414 | unknown function | unknown function | 1 | 46821 | 47024 |
| YP_009016925.1 | NC_023728_p35 | DNA Q-like | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29539 | 30360 |
| YP_009016947.1 | NC_023728_p57 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 38744 | 38935 |
| YP_009016996.1 | NC_023728_p106 | N-acetylglucosaminyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55368 | 55994 |
| YP_009016977.1 | NC_023728_p87 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 49455 | 49583 |
| YP_009016938.1 | NC_023728_p48 | hypothetical protein | phrog_7613 | unknown function | unknown function | -1 | 34332 | 34478 |
| YP_009016939.1 | NC_023728_p49 | hypothetical protein | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 34481 | 35014 |
| YP_009016926.1 | NC_023728_p36 | hypothetical protein | phrog_8186 | unknown function | unknown function | 1 | 30364 | 30450 |
| YP_009016957.1 | NC_023728_p67 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 43226 | 43381 |
| YP_009016911.1 | NC_023728_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23031 | 23372 |
| YP_009016941.1 | NC_023728_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35534 | 36331 |
| YP_009016975.1 | NC_023728_p85 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 49004 | 49177 |
| YP_009016920.1 | NC_023728_p30 | LysA | phrog_700 | endolysin | lysis | 1 | 26529 | 27683 |
| YP_009016900.1 | NC_023728_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7097 | 7504 |
| YP_009016976.1 | NC_023728_p86 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 49174 | 49458 |
| YP_009016913.1 | NC_023728_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23662 | 24300 |
| YP_009016897.1 | NC_023728_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5883 | 6449 |
| YP_009016971.1 | NC_023728_p81 | hypothetical protein | phrog_5429 | DNA repair protein | DNA, RNA and nucleotide metabolism | 1 | 47604 | 48113 |
| YP_009016967.1 | NC_023728_p77 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46561 | 46824 |
| YP_009016906.1 | NC_023728_p16 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 14839 | 16548 |
| YP_009016969.1 | NC_023728_p79 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47021 | 47215 |
| YP_009016922.1 | NC_023728_p32 | holin | phrog_443 | holin | lysis | 1 | 28691 | 28924 |
| YP_009016952.1 | NC_023728_p62 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 41268 | 41615 |
| YP_009016898.1 | NC_023728_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6446 | 6778 |
| YP_009016954.1 | NC_023728_p64 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 42100 | 42585 |
| YP_009016930.1 | NC_023728_p40 | hypothetical protein | phrog_5323 | unknown function | unknown function | -1 | 31175 | 31348 |
| YP_009016931.1 | NC_023728_p41 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 31345 | 31512 |
| YP_009016915.1 | NC_023728_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25281 | 25412 |
| YP_009016921.1 | NC_023728_p31 | LysB | phrog_102 | endolysin | lysis | 1 | 27683 | 28681 |
| YP_009016961.1 | NC_023728_p71 | hypothetical protein | phrog_17733 | unknown function | unknown function | 1 | 44725 | 44910 |
| YP_009016943.1 | NC_023728_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37217 | 37612 |
| YP_009016914.1 | NC_023728_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24297 | 25277 |
| YP_009016965.1 | NC_023728_p75 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 45575 | 45709 |
| YP_009016991.1 | NC_023728_p101 | Ser/Thr kinase | phrog_3297 | kinase | other | 1 | 53003 | 53506 |
| YP_009016908.1 | NC_023728_p18 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 17430 | 19967 |
| YP_009016892.1 | NC_023728_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_009016934.1 | NC_023728_p44 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31934 | 32119 |
| YP_009016929.1 | NC_023728_p39 | hypothetical protein | phrog_7977 | unknown function | unknown function | -1 | 30921 | 31178 |
| YP_009016953.1 | NC_023728_p63 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 41612 | 42103 |
| YP_009016932.1 | NC_023728_p42 | hypothetical protein | phrog_20138 | unknown function | unknown function | -1 | 31512 | 31682 |
| YP_009016962.1 | NC_023728_p72 | HNH domain | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44907 | 45269 |
| YP_009016983.1 | NC_023728_p93 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 50709 | 50828 |
| YP_009016956.1 | NC_023728_p66 | HTH domain | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42861 | 43226 |
| YP_009016902.1 | NC_023728_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8577 | 9513 |
| YP_009016980.1 | NC_023728_p90 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50061 | 50240 |
| YP_009016993.1 | NC_023728_p103 | hypothetical protein | phrog_9549 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54053 | 54727 |
| YP_009016987.1 | NC_023728_p97 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 51962 | 52159 |
| YP_009016893.1 | NC_023728_p3 | portal | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_009016891.1 | NC_023728_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009016994.1 | NC_023728_p104 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 54820 | 55014 |
| YP_009016910.1 | NC_023728_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21847 | 23013 |
| YP_009016927.1 | NC_023728_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30447 | 30668 |
| YP_009016986.1 | NC_023728_p96 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 51782 | 51949 |
| YP_009016995.1 | NC_023728_p105 | hypothetical protein | phrog_8053 | unknown function | unknown function | 1 | 55162 | 55371 |
| YP_009016907.1 | NC_023728_p17 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 16603 | 17433 |
| YP_009016992.1 | NC_023728_p102 | hypothetical protein | phrog_9361 | methyltransferase | other | 1 | 53512 | 54048 |
| YP_009016916.1 | NC_023728_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25624 | 25908 |
| YP_009016923.1 | NC_023728_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28921 | 29295 |
| YP_009016970.1 | NC_023728_p80 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 47212 | 47607 |
| YP_009016928.1 | NC_023728_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30661 | 30753 |
| YP_009016984.1 | NC_023728_p94 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 50840 | 51451 |
| YP_009016955.1 | NC_023728_p65 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 42582 | 42848 |
| YP_009016895.1 | NC_023728_p5 | scaffolding | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4393 | 5043 |
| YP_009016959.1 | NC_023728_p69 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 43608 | 43850 |
| YP_009016933.1 | NC_023728_p43 | hypothetical protein | phrog_8497 | unknown function | unknown function | -1 | 31711 | 31878 |
| YP_009016899.1 | NC_023728_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6781 | 7110 |
| YP_009016966.1 | NC_023728_p76 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45713 | 46564 |
| YP_009016937.1 | NC_023728_p47 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33769 | 34218 |
| YP_009016904.1 | NC_023728_p14 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9532 | 13059 |
| YP_009016964.1 | NC_023728_p74 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 45444 | 45578 |
| YP_009016950.1 | NC_023728_p60 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 39907 | 40911 |
| YP_009016919.1 | NC_023728_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26299 | 26532 |
| YP_009016942.1 | NC_023728_p52 | hypothetical protein | phrog_5931 | unknown function | unknown function | 1 | 36351 | 37211 |
| YP_009016940.1 | NC_023728_p50 | HTH domain | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 35168 | 35473 |
| YP_009016946.1 | NC_023728_p56 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 38235 | 38747 |
| YP_009016917.1 | NC_023728_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25915 | 26061 |
| YP_009016901.1 | NC_023728_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7631 | 8440 |
| YP_009016972.1 | NC_023728_p82 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 48110 | 48394 |
| YP_009016936.1 | NC_023728_p46 | integrase | phrog_1 | integrase | integration and excision | 1 | 32604 | 33707 |
| YP_009016945.1 | NC_023728_p55 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 37934 | 38218 |
| YP_009016951.1 | NC_023728_p61 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 40990 | 41271 |