Genomic map of Mycobacterium virus Deadp (NC_023728)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023728
Definition
Mycobacterium phage DeadP, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus.
DB of origin
REFSEQ
Length
56461
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
106
%GC
61.55
Number of singletons
2
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009016912.1 NC_023728_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23395 23649
YP_009016918.1 NC_023728_p28 hypothetical protein phrog_1172 unknown function unknown function 1 26058 26225
YP_009016905.1 NC_023728_p15 hypothetical protein phrog_106 minor tail protein tail 1 13138 14769
YP_009016963.1 NC_023728_p73 hypothetical protein phrog_2070 unknown function unknown function 1 45281 45451
YP_009016948.1 NC_023728_p58 hypothetical protein phrog_780 unknown function unknown function 1 38932 39159
YP_009016985.1 NC_023728_p95 MerR domain phrog_2474 MerR-like transcriptional regulator transcription regulation 1 51561 51785
YP_009016982.1 NC_023728_p92 hypothetical protein phrog_7643 unknown function unknown function 1 50374 50712
YP_009016949.1 NC_023728_p59 hypothetical protein phrog_1797 unknown function unknown function 1 39156 39872
YP_009016978.1 NC_023728_p88 hypothetical protein phrog_1901 unknown function unknown function 1 49580 49771
YP_009016896.1 NC_023728_p6 major capsid phrog_267 major head protein head and packaging 1 5062 5883
YP_009016973.1 NC_023728_p83 hypothetical protein phrog_722 unknown function unknown function 1 48387 48512
YP_009016894.1 NC_023728_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3612 4367
YP_009016960.1 NC_023728_p70 AAA ATPase phrog_1366 unknown function unknown function 1 43847 44728
YP_009016989.1 NC_023728_p99 hypothetical protein phrog_1385 unknown function unknown function 1 52566 52808
YP_009016990.1 NC_023728_p100 hypothetical protein phrog_2057 unknown function unknown function 1 52801 52962
YP_009016988.1 NC_023728_p98 hypothetical protein phrog_1186 unknown function unknown function 1 52156 52569
YP_009016935.1 NC_023728_p45 hypothetical protein phrog_20124 unknown function unknown function -1 32191 32331
YP_009016981.1 NC_023728_p91 hypothetical protein phrog_1545 unknown function unknown function 1 50240 50377
YP_009016958.1 NC_023728_p68 hypothetical protein phrog_1834 unknown function unknown function 1 43381 43611
YP_009016909.1 NC_023728_p19 D-Ala-D-Ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 19964 21850
YP_009016924.1 NC_023728_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29319 29552
YP_009016903.1 NC_023728_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8577 9128
YP_009016944.1 NC_023728_p54 hypothetical protein phrog_2025 unknown function unknown function 1 37612 37848
YP_009016979.1 NC_023728_p89 hypothetical protein phrog_6540 unknown function unknown function 1 49768 50064
YP_009016974.1 NC_023728_p84 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 48685 49017
YP_009016968.1 NC_023728_p78 hypothetical protein phrog_14414 unknown function unknown function 1 46821 47024
YP_009016925.1 NC_023728_p35 DNA Q-like phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29539 30360
YP_009016947.1 NC_023728_p57 hypothetical protein phrog_1816 unknown function unknown function 1 38744 38935
YP_009016996.1 NC_023728_p106 N-acetylglucosaminyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 55368 55994
YP_009016977.1 NC_023728_p87 hypothetical protein phrog_4152 unknown function unknown function 1 49455 49583
YP_009016938.1 NC_023728_p48 hypothetical protein phrog_7613 unknown function unknown function -1 34332 34478
YP_009016939.1 NC_023728_p49 hypothetical protein phrog_3949 transcriptional repressor transcription regulation -1 34481 35014
YP_009016926.1 NC_023728_p36 hypothetical protein phrog_8186 unknown function unknown function 1 30364 30450
YP_009016957.1 NC_023728_p67 hypothetical protein phrog_2078 unknown function unknown function 1 43226 43381
YP_009016911.1 NC_023728_p21 hypothetical protein phrog_240 head protein head and packaging 1 23031 23372
YP_009016941.1 NC_023728_p51 hypothetical protein singleton unknown function unknown function 1 35534 36331
YP_009016975.1 NC_023728_p85 hypothetical protein phrog_7842 unknown function unknown function 1 49004 49177
YP_009016920.1 NC_023728_p30 LysA phrog_700 endolysin lysis 1 26529 27683
YP_009016900.1 NC_023728_p10 hypothetical protein phrog_813 head-tail adaptor connector 1 7097 7504
YP_009016976.1 NC_023728_p86 hypothetical protein phrog_647 unknown function unknown function 1 49174 49458
YP_009016913.1 NC_023728_p23 hypothetical protein phrog_2012 minor tail protein tail 1 23662 24300
YP_009016897.1 NC_023728_p7 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 5883 6449
YP_009016971.1 NC_023728_p81 hypothetical protein phrog_5429 DNA repair protein DNA, RNA and nucleotide metabolism 1 47604 48113
YP_009016967.1 NC_023728_p77 hypothetical protein phrog_2080 unknown function unknown function 1 46561 46824
YP_009016906.1 NC_023728_p16 hypothetical protein phrog_110 minor tail protein tail 1 14839 16548
YP_009016969.1 NC_023728_p79 hypothetical protein phrog_1943 unknown function unknown function 1 47021 47215
YP_009016922.1 NC_023728_p32 holin phrog_443 holin lysis 1 28691 28924
YP_009016952.1 NC_023728_p62 hypothetical protein phrog_658 unknown function unknown function 1 41268 41615
YP_009016898.1 NC_023728_p8 hypothetical protein phrog_763 head-tail adaptor connector 1 6446 6778
YP_009016954.1 NC_023728_p64 hypothetical protein phrog_2096 unknown function unknown function 1 42100 42585
YP_009016930.1 NC_023728_p40 hypothetical protein phrog_5323 unknown function unknown function -1 31175 31348
YP_009016931.1 NC_023728_p41 hypothetical protein phrog_2864 unknown function unknown function -1 31345 31512
YP_009016915.1 NC_023728_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25281 25412
YP_009016921.1 NC_023728_p31 LysB phrog_102 endolysin lysis 1 27683 28681
YP_009016961.1 NC_023728_p71 hypothetical protein phrog_17733 unknown function unknown function 1 44725 44910
YP_009016943.1 NC_023728_p53 hypothetical protein singleton unknown function unknown function 1 37217 37612
YP_009016914.1 NC_023728_p24 hypothetical protein phrog_754 minor tail protein tail 1 24297 25277
YP_009016965.1 NC_023728_p75 hypothetical protein phrog_2451 unknown function unknown function 1 45575 45709
YP_009016991.1 NC_023728_p101 Ser/Thr kinase phrog_3297 kinase other 1 53003 53506
YP_009016908.1 NC_023728_p18 minor tail subunit phrog_346 minor tail protein tail 1 17430 19967
YP_009016892.1 NC_023728_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 587 2224
YP_009016934.1 NC_023728_p44 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31934 32119
YP_009016929.1 NC_023728_p39 hypothetical protein phrog_7977 unknown function unknown function -1 30921 31178
YP_009016953.1 NC_023728_p63 WhiB phrog_1333 unknown function unknown function 1 41612 42103
YP_009016932.1 NC_023728_p42 hypothetical protein phrog_20138 unknown function unknown function -1 31512 31682
YP_009016962.1 NC_023728_p72 HNH domain phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44907 45269
YP_009016983.1 NC_023728_p93 hypothetical protein phrog_4126 unknown function unknown function 1 50709 50828
YP_009016956.1 NC_023728_p66 HTH domain phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 42861 43226
YP_009016902.1 NC_023728_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8577 9513
YP_009016980.1 NC_023728_p90 hypothetical protein phrog_1091 unknown function unknown function 1 50061 50240
YP_009016993.1 NC_023728_p103 hypothetical protein phrog_9549 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 54053 54727
YP_009016987.1 NC_023728_p97 hypothetical protein phrog_1694 unknown function unknown function 1 51962 52159
YP_009016893.1 NC_023728_p3 portal phrog_104 portal protein head and packaging 1 2255 3625
YP_009016891.1 NC_023728_p1 terminase small subunit phrog_226 minor tail protein tail 1 109 564
YP_009016994.1 NC_023728_p104 hypothetical protein phrog_1693 unknown function unknown function 1 54820 55014
YP_009016910.1 NC_023728_p20 hypothetical protein phrog_2106 minor tail protein tail 1 21847 23013
YP_009016927.1 NC_023728_p37 hypothetical protein phrog_1791 unknown function unknown function 1 30447 30668
YP_009016986.1 NC_023728_p96 hypothetical protein phrog_1869 unknown function unknown function 1 51782 51949
YP_009016995.1 NC_023728_p105 hypothetical protein phrog_8053 unknown function unknown function 1 55162 55371
YP_009016907.1 NC_023728_p17 hypothetical protein phrog_732 minor tail protein tail 1 16603 17433
YP_009016992.1 NC_023728_p102 hypothetical protein phrog_9361 methyltransferase other 1 53512 54048
YP_009016916.1 NC_023728_p26 hypothetical protein phrog_411 unknown function unknown function 1 25624 25908
YP_009016923.1 NC_023728_p33 hypothetical protein phrog_404 minor tail protein tail 1 28921 29295
YP_009016970.1 NC_023728_p80 hypothetical protein phrog_1546 unknown function unknown function 1 47212 47607
YP_009016928.1 NC_023728_p38 hypothetical protein phrog_1839 unknown function unknown function 1 30661 30753
YP_009016984.1 NC_023728_p94 hypothetical protein phrog_1467 unknown function unknown function 1 50840 51451
YP_009016955.1 NC_023728_p65 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 42582 42848
YP_009016895.1 NC_023728_p5 scaffolding phrog_2592 head scaffolding protein head and packaging 1 4393 5043
YP_009016959.1 NC_023728_p69 hypothetical protein phrog_2632 unknown function unknown function 1 43608 43850
YP_009016933.1 NC_023728_p43 hypothetical protein phrog_8497 unknown function unknown function -1 31711 31878
YP_009016899.1 NC_023728_p9 hypothetical protein phrog_1929 head-tail connector protein connector 1 6781 7110
YP_009016966.1 NC_023728_p76 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 45713 46564
YP_009016937.1 NC_023728_p47 hypothetical protein phrog_1948 unknown function unknown function -1 33769 34218
YP_009016904.1 NC_023728_p14 tapemeasure phrog_1942 tail length tape measure protein tail 1 9532 13059
YP_009016964.1 NC_023728_p74 hypothetical protein phrog_1311 unknown function unknown function 1 45444 45578
YP_009016950.1 NC_023728_p60 hypothetical protein phrog_3416 unknown function unknown function 1 39907 40911
YP_009016919.1 NC_023728_p29 hypothetical protein phrog_747 unknown function unknown function 1 26299 26532
YP_009016942.1 NC_023728_p52 hypothetical protein phrog_5931 unknown function unknown function 1 36351 37211
YP_009016940.1 NC_023728_p50 HTH domain phrog_6267 transcriptional repressor transcription regulation 1 35168 35473
YP_009016946.1 NC_023728_p56 hypothetical protein phrog_2021 unknown function unknown function 1 38235 38747
YP_009016917.1 NC_023728_p27 hypothetical protein phrog_932 unknown function unknown function 1 25915 26061
YP_009016901.1 NC_023728_p11 major tail subunit phrog_476 major tail protein tail 1 7631 8440
YP_009016972.1 NC_023728_p82 hypothetical protein phrog_647 unknown function unknown function 1 48110 48394
YP_009016936.1 NC_023728_p46 integrase phrog_1 integrase integration and excision 1 32604 33707
YP_009016945.1 NC_023728_p55 hypothetical protein phrog_1840 excisionase integration and excision 1 37934 38218
YP_009016951.1 NC_023728_p61 hypothetical protein phrog_1849 unknown function unknown function 1 40990 41271