Genomic map of Mycobacterium phage Charlie (NC_023729)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023729
Definition
Mycobacterium phage Charlie, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nclasvirinae; Charlievirus.
DB of origin
REFSEQ
Length
43036
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
66.33
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009017005.1 NC_023729_p9 hypothetical protein phrog_1531 head closure connector 1 6438 6782
YP_009017011.1 NC_023729_p15 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 9036 9566
YP_009017003.1 NC_023729_p7 hypothetical protein phrog_7530 unknown function unknown function 1 5730 5963
YP_009017002.1 NC_023729_p6 major capsid protein phrog_10 major head protein head and packaging 1 4372 5664
YP_009016998.1 NC_023729_p2 terminase phrog_9 terminase large subunit head and packaging 1 504 2036
YP_009017051.1 NC_023729_p55 hypothetical protein phrog_5505 unknown function unknown function 1 34718 34936
YP_009017045.1 NC_023729_p49 hypothetical protein phrog_4387 unknown function unknown function 1 32909 33271
YP_009017029.1 NC_023729_p33 hypothetical protein phrog_1712 unknown function unknown function -1 26063 26404
YP_009017032.1 NC_023729_p36 hypothetical protein phrog_4583 transcriptional repressor transcription regulation 1 27920 28153
YP_009017059.1 NC_023729_p63 hypothetical protein phrog_15405 unknown function unknown function 1 40315 40896
YP_009017028.1 NC_023729_p32 hypothetical protein phrog_17706 membrane protein moron, auxiliary metabolic gene and host takeover -1 25674 26039
YP_009017012.1 NC_023729_p16 tapemeasure phrog_2337 tail length tape measure protein tail 1 10123 13266
YP_009017062.1 NC_023729_p66 hypothetical protein phrog_1186 unknown function unknown function 1 41866 42321
YP_009017050.1 NC_023729_p54 HTH DNA binding domain phrog_19978 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34401 34721
YP_009017025.1 NC_023729_p29 holin phrog_526 holin lysis 1 24339 24743
YP_009017040.1 NC_023729_p44 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation 1 30217 30516
YP_009017004.1 NC_023729_p8 hypothetical protein phrog_442 head-tail adaptor connector 1 5956 6441
YP_009017033.1 NC_023729_p37 hypothetical protein phrog_3507 unknown function unknown function 1 28150 28536
YP_009017036.1 NC_023729_p40 hypothetical protein phrog_9601 unknown function unknown function 1 29132 29386
YP_009017015.1 NC_023729_p19 minor tail subunit phrog_732 minor tail protein tail 1 16714 17556
YP_009017042.1 NC_023729_p46 hypothetical protein phrog_11506 unknown function unknown function 1 30644 30997
YP_009017047.1 NC_023729_p51 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 33657 33905
YP_009017026.1 NC_023729_p30 hypothetical protein phrog_404 minor tail protein tail 1 24740 25108
YP_009017013.1 NC_023729_p17 minor tail subunit phrog_106 minor tail protein tail 1 13268 14989
YP_009017001.1 NC_023729_p5 capsid maturation protease phrog_80 head maturation protease head and packaging 1 3538 4344
YP_009017027.1 NC_023729_p31 hypothetical protein phrog_8245 HicB-like antitoxin moron, auxiliary metabolic gene and host takeover -1 25182 25565
YP_009017017.1 NC_023729_p21 hypothetical protein phrog_14065 unknown function unknown function 1 19550 20191
YP_009017063.1 NC_023729_p67 major facilitator transporter phrog_1385 unknown function unknown function 1 42318 42563
YP_009017021.1 NC_023729_p25 hypothetical protein phrog_1172 unknown function unknown function 1 22169 22348
YP_009017019.1 NC_023729_p23 hypothetical protein phrog_6443 unknown function unknown function 1 21446 21742
YP_009017056.1 NC_023729_p60 hypothetical protein phrog_2451 unknown function unknown function 1 38669 38830
YP_009017055.1 NC_023729_p59 hypothetical protein phrog_1311 unknown function unknown function 1 38529 38672
YP_009017037.1 NC_023729_p41 hypothetical protein phrog_658 unknown function unknown function 1 29383 29745
YP_009017064.1 NC_023729_p68 hypothetical protein phrog_35672 unknown function unknown function -1 42535 42915
YP_009017058.1 NC_023729_p62 hypothetical protein phrog_3599 unknown function unknown function 1 39720 40322
YP_009017052.1 NC_023729_p56 DNA methylase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 34933 37557
YP_009017000.1 NC_023729_p4 portal phrog_12 portal protein head and packaging 1 2249 3538
YP_009017006.1 NC_023729_p10 hypothetical protein phrog_8006 neck protein connector 1 6794 6988
YP_009017043.1 NC_023729_p47 RecE phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 30994 31923
YP_009017009.1 NC_023729_p13 major tail subunit phrog_476 major tail protein tail 1 7877 8935
YP_009017014.1 NC_023729_p18 minor tail subunit phrog_110 minor tail protein tail 1 14989 16698
YP_009017016.1 NC_023729_p20 minor tail subunit phrog_3493 minor tail protein tail 1 17556 19550
YP_009017010.1 NC_023729_p14 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 9036 9942
YP_009017046.1 NC_023729_p50 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 33268 33660
YP_009017044.1 NC_023729_p48 RecT phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 31920 32912
YP_009017060.1 NC_023729_p64 hypothetical protein phrog_908 unknown function unknown function 1 40893 41558
YP_009017038.1 NC_023729_p42 hypothetical protein phrog_4981 unknown function unknown function 1 29742 30068
YP_009017034.1 NC_023729_p38 hypothetical protein phrog_10253 unknown function unknown function 1 28533 28649
YP_009017041.1 NC_023729_p45 hypothetical protein phrog_5806 unknown function unknown function 1 30513 30647
YP_009017008.1 NC_023729_p12 hypothetical protein phrog_813 head-tail adaptor connector 1 7343 7762
YP_009016997.1 NC_023729_p1 hypothetical protein phrog_6975 unknown function unknown function 1 64 504
YP_009017020.1 NC_023729_p24 hypothetical protein phrog_3758 virion structural protein head and packaging 1 21744 22169
YP_009017053.1 NC_023729_p57 hypothetical protein phrog_464 unknown function unknown function 1 37679 38128
YP_009017057.1 NC_023729_p61 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 38830 39723
YP_009016999.1 NC_023729_p3 hypothetical protein phrog_6750 unknown function unknown function 1 2029 2235
YP_009017049.1 NC_023729_p53 hypothetical protein phrog_10863 unknown function unknown function 1 34114 34401
YP_009017018.1 NC_023729_p22 hypothetical protein phrog_17035 minor tail protein tail 1 20220 21437
YP_009017035.1 NC_023729_p39 hypothetical protein phrog_5081 unknown function unknown function 1 28646 29074
YP_009017030.1 NC_023729_p34 integrase (Y-int) phrog_1 integrase integration and excision -1 26438 27325
YP_009017039.1 NC_023729_p43 hypothetical protein phrog_36253 unknown function unknown function 1 30065 30220
YP_009017048.1 NC_023729_p52 hypothetical protein phrog_10863 unknown function unknown function 1 33902 34117
YP_009017023.1 NC_023729_p27 hypothetical protein phrog_747 unknown function unknown function 1 22565 22837
YP_009017061.1 NC_023729_p65 hypothetical protein phrog_1694 unknown function unknown function 1 41702 41926
YP_009017024.1 NC_023729_p28 LysA phrog_1519 endolysin lysis 1 22834 24342
YP_009017054.1 NC_023729_p58 hypothetical protein phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38128 38529
YP_009017022.1 NC_023729_p26 hypothetical protein phrog_6832 unknown function unknown function 1 22348 22533
YP_009017031.1 NC_023729_p35 immunity repressor phrog_2328 transcriptional repressor transcription regulation -1 27415 27786
YP_009017007.1 NC_023729_p11 hypothetical protein phrog_2325 minor tail protein tail 1 6975 7346