| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023729 |
Definition |
Mycobacterium phage Charlie, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nclasvirinae; Charlievirus. |
DB of origin |
REFSEQ |
Length |
43036 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
66.33 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009017005.1 | NC_023729_p9 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 6438 | 6782 |
| YP_009017011.1 | NC_023729_p15 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9036 | 9566 |
| YP_009017003.1 | NC_023729_p7 | hypothetical protein | phrog_7530 | unknown function | unknown function | 1 | 5730 | 5963 |
| YP_009017002.1 | NC_023729_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4372 | 5664 |
| YP_009016998.1 | NC_023729_p2 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 504 | 2036 |
| YP_009017051.1 | NC_023729_p55 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 34718 | 34936 |
| YP_009017045.1 | NC_023729_p49 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 32909 | 33271 |
| YP_009017029.1 | NC_023729_p33 | hypothetical protein | phrog_1712 | unknown function | unknown function | -1 | 26063 | 26404 |
| YP_009017032.1 | NC_023729_p36 | hypothetical protein | phrog_4583 | transcriptional repressor | transcription regulation | 1 | 27920 | 28153 |
| YP_009017059.1 | NC_023729_p63 | hypothetical protein | phrog_15405 | unknown function | unknown function | 1 | 40315 | 40896 |
| YP_009017028.1 | NC_023729_p32 | hypothetical protein | phrog_17706 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 25674 | 26039 |
| YP_009017012.1 | NC_023729_p16 | tapemeasure | phrog_2337 | tail length tape measure protein | tail | 1 | 10123 | 13266 |
| YP_009017062.1 | NC_023729_p66 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 41866 | 42321 |
| YP_009017050.1 | NC_023729_p54 | HTH DNA binding domain | phrog_19978 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34401 | 34721 |
| YP_009017025.1 | NC_023729_p29 | holin | phrog_526 | holin | lysis | 1 | 24339 | 24743 |
| YP_009017040.1 | NC_023729_p44 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 30217 | 30516 |
| YP_009017004.1 | NC_023729_p8 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 5956 | 6441 |
| YP_009017033.1 | NC_023729_p37 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 28150 | 28536 |
| YP_009017036.1 | NC_023729_p40 | hypothetical protein | phrog_9601 | unknown function | unknown function | 1 | 29132 | 29386 |
| YP_009017015.1 | NC_023729_p19 | minor tail subunit | phrog_732 | minor tail protein | tail | 1 | 16714 | 17556 |
| YP_009017042.1 | NC_023729_p46 | hypothetical protein | phrog_11506 | unknown function | unknown function | 1 | 30644 | 30997 |
| YP_009017047.1 | NC_023729_p51 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33657 | 33905 |
| YP_009017026.1 | NC_023729_p30 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24740 | 25108 |
| YP_009017013.1 | NC_023729_p17 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 13268 | 14989 |
| YP_009017001.1 | NC_023729_p5 | capsid maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3538 | 4344 |
| YP_009017027.1 | NC_023729_p31 | hypothetical protein | phrog_8245 | HicB-like antitoxin | moron, auxiliary metabolic gene and host takeover | -1 | 25182 | 25565 |
| YP_009017017.1 | NC_023729_p21 | hypothetical protein | phrog_14065 | unknown function | unknown function | 1 | 19550 | 20191 |
| YP_009017063.1 | NC_023729_p67 | major facilitator transporter | phrog_1385 | unknown function | unknown function | 1 | 42318 | 42563 |
| YP_009017021.1 | NC_023729_p25 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 22169 | 22348 |
| YP_009017019.1 | NC_023729_p23 | hypothetical protein | phrog_6443 | unknown function | unknown function | 1 | 21446 | 21742 |
| YP_009017056.1 | NC_023729_p60 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 38669 | 38830 |
| YP_009017055.1 | NC_023729_p59 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 38529 | 38672 |
| YP_009017037.1 | NC_023729_p41 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 29383 | 29745 |
| YP_009017064.1 | NC_023729_p68 | hypothetical protein | phrog_35672 | unknown function | unknown function | -1 | 42535 | 42915 |
| YP_009017058.1 | NC_023729_p62 | hypothetical protein | phrog_3599 | unknown function | unknown function | 1 | 39720 | 40322 |
| YP_009017052.1 | NC_023729_p56 | DNA methylase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 34933 | 37557 |
| YP_009017000.1 | NC_023729_p4 | portal | phrog_12 | portal protein | head and packaging | 1 | 2249 | 3538 |
| YP_009017006.1 | NC_023729_p10 | hypothetical protein | phrog_8006 | neck protein | connector | 1 | 6794 | 6988 |
| YP_009017043.1 | NC_023729_p47 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 30994 | 31923 |
| YP_009017009.1 | NC_023729_p13 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7877 | 8935 |
| YP_009017014.1 | NC_023729_p18 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 14989 | 16698 |
| YP_009017016.1 | NC_023729_p20 | minor tail subunit | phrog_3493 | minor tail protein | tail | 1 | 17556 | 19550 |
| YP_009017010.1 | NC_023729_p14 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 9036 | 9942 |
| YP_009017046.1 | NC_023729_p50 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 33268 | 33660 |
| YP_009017044.1 | NC_023729_p48 | RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 31920 | 32912 |
| YP_009017060.1 | NC_023729_p64 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 40893 | 41558 |
| YP_009017038.1 | NC_023729_p42 | hypothetical protein | phrog_4981 | unknown function | unknown function | 1 | 29742 | 30068 |
| YP_009017034.1 | NC_023729_p38 | hypothetical protein | phrog_10253 | unknown function | unknown function | 1 | 28533 | 28649 |
| YP_009017041.1 | NC_023729_p45 | hypothetical protein | phrog_5806 | unknown function | unknown function | 1 | 30513 | 30647 |
| YP_009017008.1 | NC_023729_p12 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7343 | 7762 |
| YP_009016997.1 | NC_023729_p1 | hypothetical protein | phrog_6975 | unknown function | unknown function | 1 | 64 | 504 |
| YP_009017020.1 | NC_023729_p24 | hypothetical protein | phrog_3758 | virion structural protein | head and packaging | 1 | 21744 | 22169 |
| YP_009017053.1 | NC_023729_p57 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 37679 | 38128 |
| YP_009017057.1 | NC_023729_p61 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 38830 | 39723 |
| YP_009016999.1 | NC_023729_p3 | hypothetical protein | phrog_6750 | unknown function | unknown function | 1 | 2029 | 2235 |
| YP_009017049.1 | NC_023729_p53 | hypothetical protein | phrog_10863 | unknown function | unknown function | 1 | 34114 | 34401 |
| YP_009017018.1 | NC_023729_p22 | hypothetical protein | phrog_17035 | minor tail protein | tail | 1 | 20220 | 21437 |
| YP_009017035.1 | NC_023729_p39 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 28646 | 29074 |
| YP_009017030.1 | NC_023729_p34 | integrase (Y-int) | phrog_1 | integrase | integration and excision | -1 | 26438 | 27325 |
| YP_009017039.1 | NC_023729_p43 | hypothetical protein | phrog_36253 | unknown function | unknown function | 1 | 30065 | 30220 |
| YP_009017048.1 | NC_023729_p52 | hypothetical protein | phrog_10863 | unknown function | unknown function | 1 | 33902 | 34117 |
| YP_009017023.1 | NC_023729_p27 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 22565 | 22837 |
| YP_009017061.1 | NC_023729_p65 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 41702 | 41926 |
| YP_009017024.1 | NC_023729_p28 | LysA | phrog_1519 | endolysin | lysis | 1 | 22834 | 24342 |
| YP_009017054.1 | NC_023729_p58 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38128 | 38529 |
| YP_009017022.1 | NC_023729_p26 | hypothetical protein | phrog_6832 | unknown function | unknown function | 1 | 22348 | 22533 |
| YP_009017031.1 | NC_023729_p35 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 27415 | 27786 |
| YP_009017007.1 | NC_023729_p11 | hypothetical protein | phrog_2325 | minor tail protein | tail | 1 | 6975 | 7346 |