| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023730 |
Definition |
Mycobacterium phage Redi, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nclasvirinae; Redivirus. |
DB of origin |
REFSEQ |
Length |
42594 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
66.14 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009017132.1 | NC_023730_p68 | protein of an unannotated phage | phrog_1385 | unknown function | unknown function | 1 | 41877 | 42122 |
| YP_009017106.1 | NC_023730_p42 | protein of an unannotated phage | phrog_5081 | unknown function | unknown function | 1 | 30202 | 30669 |
| YP_009017073.1 | NC_023730_p9 | protein of an unannotated phage | phrog_1531 | head closure | connector | 1 | 6479 | 6823 |
| YP_009017090.1 | NC_023730_p26 | protein of an unannotated phage | phrog_526 | holin | lysis | 1 | 23389 | 23793 |
| YP_009017082.1 | NC_023730_p18 | protein of an unannotated phage | phrog_110 | minor tail protein | tail | 1 | 14993 | 16702 |
| YP_009017129.1 | NC_023730_p65 | protein of an unannotated phage | phrog_27168 | unknown function | unknown function | 1 | 40992 | 41258 |
| YP_009017066.1 | NC_023730_p2 | protein of an unannotated phage | phrog_9 | terminase large subunit | head and packaging | 1 | 512 | 2044 |
| YP_009017110.1 | NC_023730_p46 | protein of an unannotated phage | phrog_11875 | unknown function | unknown function | 1 | 32062 | 32235 |
| YP_009017093.1 | NC_023730_p29 | protein of an unannotated phage | phrog_38264 | unknown function | unknown function | 1 | 25182 | 25361 |
| YP_009017130.1 | NC_023730_p66 | protein of an unannotated phage | phrog_1694 | unknown function | unknown function | 1 | 41261 | 41485 |
| YP_009017088.1 | NC_023730_p24 | protein of an unannotated phage | phrog_1172 | unknown function | unknown function | 1 | 21647 | 21823 |
| YP_009017074.1 | NC_023730_p10 | protein of an unannotated phage | phrog_8006 | neck protein | connector | 1 | 6836 | 7033 |
| YP_009017118.1 | NC_023730_p54 | protein of an unannotated phage | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35783 | 36175 |
| YP_009017077.1 | NC_023730_p13 | protein of an unannotated phage | phrog_476 | major tail protein | tail | 1 | 7923 | 8981 |
| YP_009017133.1 | NC_023730_p69 | protein of an unannotated phage | phrog_35672 | unknown function | unknown function | -1 | 42133 | 42462 |
| YP_009017111.1 | NC_023730_p47 | protein of an unannotated phage | phrog_36278 | unknown function | unknown function | 1 | 32232 | 32360 |
| YP_009017113.1 | NC_023730_p49 | protein of an unannotated phage | phrog_1333 | unknown function | unknown function | 1 | 32626 | 33006 |
| YP_009017092.1 | NC_023730_p28 | protein of an unannotated phage | phrog_33457 | minor tail protein | tail | -1 | 24414 | 25067 |
| YP_009017112.1 | NC_023730_p48 | protein of an unannotated phage | phrog_8273 | unknown function | unknown function | 1 | 32357 | 32629 |
| YP_009017086.1 | NC_023730_p22 | protein of an unannotated phage | phrog_6030 | unknown function | unknown function | 1 | 21028 | 21267 |
| YP_009017067.1 | NC_023730_p3 | protein of an unannotated phage | phrog_6750 | unknown function | unknown function | 1 | 2037 | 2246 |
| YP_009017124.1 | NC_023730_p60 | protein of an unannotated phage | phrog_30312 | unknown function | unknown function | 1 | 38126 | 38245 |
| YP_009017084.1 | NC_023730_p20 | protein of an unannotated phage | phrog_3493 | minor tail protein | tail | 1 | 17560 | 19866 |
| YP_009017108.1 | NC_023730_p44 | protein of an unannotated phage | phrog_15773 | unknown function | unknown function | 1 | 31044 | 31706 |
| YP_009017087.1 | NC_023730_p23 | protein of an unannotated phage | phrog_240 | head protein | head and packaging | 1 | 21267 | 21647 |
| YP_009017121.1 | NC_023730_p57 | protein of an unannotated phage | phrog_11218 | unknown function | unknown function | 1 | 36815 | 37108 |
| YP_009017126.1 | NC_023730_p62 | protein of an unannotated phage | phrog_3599 | unknown function | unknown function | 1 | 39142 | 39744 |
| YP_009017083.1 | NC_023730_p19 | protein of an unannotated phage | phrog_732 | minor tail protein | tail | 1 | 16718 | 17560 |
| YP_009017072.1 | NC_023730_p8 | protein of an unannotated phage | phrog_442 | head-tail adaptor | connector | 1 | 5997 | 6482 |
| YP_009017071.1 | NC_023730_p7 | protein of an unannotated phage | phrog_7530 | unknown function | unknown function | 1 | 5753 | 6004 |
| YP_009017122.1 | NC_023730_p58 | protein of an unannotated phage | phrog_5505 | unknown function | unknown function | 1 | 37108 | 37323 |
| YP_009017128.1 | NC_023730_p64 | protein of an unannotated phage | phrog_908 | unknown function | unknown function | 1 | 40183 | 40848 |
| YP_009017119.1 | NC_023730_p55 | protein of an unannotated phage | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 36172 | 36420 |
| YP_009017065.1 | NC_023730_p1 | protein of an unannotated phage | phrog_6975 | unknown function | unknown function | 1 | 63 | 512 |
| YP_009017078.1 | NC_023730_p14 | protein of an unannotated phage | phrog_978 | tail assembly chaperone | tail | 1 | 9081 | 9987 |
| YP_009017094.1 | NC_023730_p30 | protein of an unannotated phage | phrog_32282 | unknown function | unknown function | 1 | 25369 | 25776 |
| YP_009017107.1 | NC_023730_p43 | protein of an unannotated phage | phrog_15628 | unknown function | unknown function | 1 | 30733 | 31047 |
| YP_009017131.1 | NC_023730_p67 | protein of an unannotated phage | phrog_1186 | unknown function | unknown function | 1 | 41425 | 41880 |
| YP_009017116.1 | NC_023730_p52 | protein of an unannotated phage | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34363 | 35427 |
| YP_009017099.1 | NC_023730_p35 | protein of an unannotated phage | phrog_16514 | unknown function | unknown function | -1 | 27478 | 27630 |
| YP_009017085.1 | NC_023730_p21 | protein of an unannotated phage | phrog_416 | minor tail protein | tail | 1 | 19877 | 21031 |
| YP_009017102.1 | NC_023730_p38 | protein of an unannotated phage | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 29039 | 29410 |
| YP_009017117.1 | NC_023730_p53 | protein of an unannotated phage | phrog_4387 | unknown function | unknown function | 1 | 35424 | 35786 |
| YP_009017095.1 | NC_023730_p31 | protein of an unannotated phage | phrog_32886 | unknown function | unknown function | 1 | 25979 | 26173 |
| YP_009017105.1 | NC_023730_p41 | protein of an unannotated phage | phrog_10253 | unknown function | unknown function | 1 | 30080 | 30205 |
| YP_009017080.1 | NC_023730_p16 | protein of an unannotated phage | phrog_2337 | tail length tape measure protein | tail | 1 | 10169 | 13270 |
| YP_009017079.1 | NC_023730_p15 | protein of an unannotated phage | phrog_621 | tail assembly chaperone | tail | 1 | 9081 | 9611 |
| YP_009017125.1 | NC_023730_p61 | protein of an unannotated phage | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 38267 | 39145 |
| YP_009017069.1 | NC_023730_p5 | protein of an unannotated phage | phrog_80 | head maturation protease | head and packaging | 1 | 3555 | 4361 |
| YP_009017104.1 | NC_023730_p40 | protein of an unannotated phage | phrog_3507 | unknown function | unknown function | 1 | 29772 | 30083 |
| YP_009017098.1 | NC_023730_p34 | protein of an unannotated phage | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 27213 | 27428 |
| YP_009017101.1 | NC_023730_p37 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 28064 | 28951 |
| YP_009017120.1 | NC_023730_p56 | protein of an unannotated phage | phrog_6650 | unknown function | unknown function | 1 | 36417 | 36818 |
| YP_009017127.1 | NC_023730_p63 | protein of an unannotated phage | phrog_15405 | unknown function | unknown function | 1 | 39731 | 40186 |
| YP_009017081.1 | NC_023730_p17 | protein of an unannotated phage | phrog_106 | minor tail protein | tail | 1 | 13272 | 14993 |
| YP_009017115.1 | NC_023730_p51 | protein of an unannotated phage | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 33347 | 34357 |
| YP_009017114.1 | NC_023730_p50 | protein of an unannotated phage | phrog_11506 | unknown function | unknown function | 1 | 33003 | 33350 |
| YP_009017091.1 | NC_023730_p27 | protein of an unannotated phage | phrog_404 | minor tail protein | tail | 1 | 23790 | 24299 |
| YP_009017097.1 | NC_023730_p33 | protein of an unannotated phage | phrog_8245 | HicB-like antitoxin | moron, auxiliary metabolic gene and host takeover | -1 | 26833 | 27216 |
| YP_009017103.1 | NC_023730_p39 | protein of an unannotated phage | phrog_4583 | transcriptional repressor | transcription regulation | 1 | 29533 | 29775 |
| YP_009017076.1 | NC_023730_p12 | protein of an unannotated phage | phrog_813 | head-tail adaptor | connector | 1 | 7388 | 7807 |
| YP_009017075.1 | NC_023730_p11 | protein of an unannotated phage | phrog_2325 | minor tail protein | tail | 1 | 7020 | 7391 |
| YP_009017070.1 | NC_023730_p6 | protein of an unannotated phage | phrog_10 | major head protein | head and packaging | 1 | 4389 | 5684 |
| YP_009017109.1 | NC_023730_p45 | protein of an unannotated phage | phrog_658 | unknown function | unknown function | 1 | 31703 | 32065 |
| YP_009017089.1 | NC_023730_p25 | protein of an unannotated phage | phrog_1519 | endolysin | lysis | 1 | 21893 | 23392 |
| YP_009017068.1 | NC_023730_p4 | protein of an unannotated phage | phrog_12 | portal protein | head and packaging | 1 | 2263 | 3552 |
| YP_009017123.1 | NC_023730_p59 | protein of an unannotated phage | phrog_25663 | unknown function | unknown function | 1 | 37320 | 38129 |
| YP_009017100.1 | NC_023730_p36 | protein of an unannotated phage | phrog_1712 | unknown function | unknown function | -1 | 27680 | 28018 |
| YP_009017096.1 | NC_023730_p32 | protein of an unannotated phage | phrog_31065 | unknown function | unknown function | -1 | 26262 | 26819 |