| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023731 |
Definition |
Mycobacterium phage Trixie, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53526 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
64.46 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009017212.1 | NC_023731_p79 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 47543 | 47785 |
| YP_009017145.1 | NC_023731_p12 | lysin B | phrog_102 | endolysin | lysis | 1 | 8087 | 9064 |
| YP_009017152.1 | NC_023731_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 15031 | 15408 |
| YP_009017172.1 | NC_023731_p39 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 29252 | 29551 |
| YP_009017163.1 | NC_023731_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23642 | 24088 |
| YP_009017199.1 | NC_023731_p66 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 42679 | 42816 |
| YP_009017178.1 | NC_023731_p45 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32434 | 33165 |
| YP_009017164.1 | NC_023731_p31 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24085 | 24438 |
| YP_009017171.1 | NC_023731_p38 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28888 | 29265 |
| YP_009017208.1 | NC_023731_p75 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 46703 | 46861 |
| YP_009017201.1 | NC_023731_p68 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | -1 | 43045 | 43815 |
| YP_009017166.1 | NC_023731_p33 | integrase (Y-int) | phrog_1 | integrase | integration and excision | -1 | 26259 | 27323 |
| YP_009017189.1 | NC_023731_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38794 | 39186 |
| YP_009017148.1 | NC_023731_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 12460 | 13212 |
| YP_009017225.1 | NC_023731_p92 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 52047 | 52346 |
| YP_009017169.1 | NC_023731_p36 | hypothetical protein | phrog_13926 | unknown function | unknown function | -1 | 28510 | 28710 |
| YP_009017184.1 | NC_023731_p51 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 36877 | 37029 |
| YP_009017220.1 | NC_023731_p87 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 50242 | 50409 |
| YP_009017167.1 | NC_023731_p34 | DNA binding domain | phrog_733 | excisionase | integration and excision | 1 | 27768 | 28199 |
| YP_009017192.1 | NC_023731_p59 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 39833 | 40009 |
| YP_009017136.1 | NC_023731_p3 | VIP2 | phrog_4491 | unknown function | unknown function | 1 | 2122 | 2427 |
| YP_009017197.1 | NC_023731_p64 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 41654 | 41830 |
| YP_009017183.1 | NC_023731_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36206 | 36877 |
| YP_009017204.1 | NC_023731_p71 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44301 | 45128 |
| YP_009017156.1 | NC_023731_p23 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 16308 | 16733 |
| YP_009017159.1 | NC_023731_p26 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 17455 | 17859 |
| YP_009017205.1 | NC_023731_p72 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 45125 | 45538 |
| YP_009017151.1 | NC_023731_p18 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 14845 | 15027 |
| YP_009017165.1 | NC_023731_p32 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 24439 | 26220 |
| YP_009017134.1 | NC_023731_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 507 | 1274 |
| YP_009017158.1 | NC_023731_p25 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 17455 | 18284 |
| YP_009017216.1 | NC_023731_p83 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48976 | 49116 |
| YP_009017176.1 | NC_023731_p43 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31820 | 32233 |
| YP_009017196.1 | NC_023731_p63 | hypothetical protein | phrog_5101 | unknown function | unknown function | -1 | 41343 | 41657 |
| YP_009017198.1 | NC_023731_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41863 | 42669 |
| YP_009017180.1 | NC_023731_p47 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33811 | 35841 |
| YP_009017224.1 | NC_023731_p91 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 51198 | 51908 |
| YP_009017190.1 | NC_023731_p57 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 39255 | 39389 |
| YP_009017219.1 | NC_023731_p86 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49794 | 50150 |
| YP_009017154.1 | NC_023731_p21 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 15596 | 15964 |
| YP_009017161.1 | NC_023731_p28 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 20845 | 21858 |
| YP_009017222.1 | NC_023731_p89 | hypothetical protein | phrog_8476 | unknown function | unknown function | -1 | 50621 | 50923 |
| YP_009017173.1 | NC_023731_p40 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 29542 | 29772 |
| YP_009017214.1 | NC_023731_p81 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47910 | 48218 |
| YP_009017147.1 | NC_023731_p14 | portal | phrog_104 | portal protein | head and packaging | 1 | 10871 | 12331 |
| YP_009017211.1 | NC_023731_p78 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 47271 | 47546 |
| YP_009017179.1 | NC_023731_p46 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33275 | 33814 |
| YP_009017157.1 | NC_023731_p24 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 16751 | 17341 |
| YP_009017202.1 | NC_023731_p69 | hypothetical protein | phrog_666 | unknown function | unknown function | -1 | 43844 | 44038 |
| YP_009017209.1 | NC_023731_p76 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 46862 | 47131 |
| YP_009017193.1 | NC_023731_p60 | hydrolase | phrog_789 | esterase/lipase | other | -1 | 39991 | 40833 |
| YP_009017181.1 | NC_023731_p48 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35842 | 36033 |
| YP_009017194.1 | NC_023731_p61 | hypothetical protein | phrog_13419 | unknown function | unknown function | -1 | 40821 | 40973 |
| YP_009017213.1 | NC_023731_p80 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 47782 | 47910 |
| YP_009017146.1 | NC_023731_p13 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 9087 | 10874 |
| YP_009017143.1 | NC_023731_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 6376 | 7671 |
| YP_009017182.1 | NC_023731_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36030 | 36209 |
| YP_009017135.1 | NC_023731_p2 | hypothetical protein | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1367 | 2125 |
| YP_009017175.1 | NC_023731_p42 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30024 | 31811 |
| YP_009017160.1 | NC_023731_p27 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 18274 | 20811 |
| YP_009017206.1 | NC_023731_p73 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45596 | 46174 |
| YP_009017200.1 | NC_023731_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42813 | 43058 |
| YP_009017215.1 | NC_023731_p82 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 48218 | 48979 |
| YP_009017195.1 | NC_023731_p62 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40974 | 41204 |
| YP_009017144.1 | NC_023731_p11 | holin | phrog_526 | holin | lysis | 1 | 7668 | 8090 |
| YP_009017138.1 | NC_023731_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2759 | 3229 |
| YP_009017177.1 | NC_023731_p44 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32230 | 32430 |
| YP_009017153.1 | NC_023731_p20 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 15405 | 15599 |
| YP_009017141.1 | NC_023731_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 5232 | 5918 |
| YP_009017207.1 | NC_023731_p74 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 46399 | 46566 |
| YP_009017137.1 | NC_023731_p4 | HNH endonuclease domain | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2424 | 2720 |
| YP_009017142.1 | NC_023731_p9 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 6218 | 6376 |
| YP_009017140.1 | NC_023731_p7 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 4278 | 5228 |
| YP_009017218.1 | NC_023731_p85 | hypothetical protein | phrog_12268 | unknown function | unknown function | -1 | 49441 | 49773 |
| YP_009017168.1 | NC_023731_p35 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 28326 | 28496 |
| YP_009017174.1 | NC_023731_p41 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29772 | 29993 |
| YP_009017191.1 | NC_023731_p58 | endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39415 | 39882 |
| YP_009017203.1 | NC_023731_p70 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 44035 | 44253 |
| YP_009017149.1 | NC_023731_p16 | scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 13264 | 13788 |
| YP_009017186.1 | NC_023731_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37799 | 38251 |
| YP_009017162.1 | NC_023731_p29 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 21855 | 23627 |
| YP_009017188.1 | NC_023731_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38334 | 38966 |
| YP_009017155.1 | NC_023731_p22 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15964 | 16299 |
| YP_009017185.1 | NC_023731_p52 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37032 | 37802 |
| YP_009017210.1 | NC_023731_p77 | hypothetical protein | phrog_8490 | unknown function | unknown function | -1 | 47131 | 47274 |
| YP_009017217.1 | NC_023731_p84 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 49113 | 49391 |
| YP_009017187.1 | NC_023731_p54 | hypothetical protein | phrog_2264 | unknown function | unknown function | -1 | 38248 | 38334 |
| YP_009017170.1 | NC_023731_p37 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 28718 | 28891 |
| YP_009017139.1 | NC_023731_p6 | structural, minor tail | phrog_1260 | minor tail protein | tail | 1 | 3316 | 4278 |
| YP_009017150.1 | NC_023731_p17 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 13819 | 14775 |
| YP_009017221.1 | NC_023731_p88 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 50406 | 50621 |
| YP_009017223.1 | NC_023731_p90 | hypothetical protein | phrog_3207 | unknown function | unknown function | -1 | 50923 | 51189 |