| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023735 |
Definition |
Rhodococcus phage ReqiPepy6, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pepyhexavirus. |
DB of origin |
REFSEQ |
Length |
76797 |
Host Name |
Rhodococcus equi |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
107 |
%GC |
53.41 |
Number of singletons |
12 |
Number of paralogs |
12 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009017669.1 | NC_023735_p55 | hypothetical protein | phrog_2152 | unknown function | unknown function | 1 | 43823 | 44617 |
| YP_009017649.1 | NC_023735_p35 | tape measure protein | phrog_4372 | tail length tape measure protein | tail | 1 | 30017 | 35869 |
| YP_009017625.1 | NC_023735_p11 | holin | phrog_29195 | holin | lysis | 1 | 9809 | 10297 |
| YP_009017719.1 | NC_023735_p105 | hypothetical protein | phrog_3953 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 72958 | 73512 |
| YP_009017706.1 | NC_023735_p92 | hypothetical protein | phrog_35556 | unknown function | unknown function | 1 | 64801 | 65370 |
| YP_009017686.1 | NC_023735_p72 | hypothetical protein | phrog_4210 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 52377 | 56261 |
| YP_009017712.1 | NC_023735_p98 | hypothetical protein | phrog_35090 | unknown function | unknown function | 1 | 67336 | 68703 |
| YP_009017656.1 | NC_023735_p42 | hypothetical protein | phrog_32238 | unknown function | unknown function | 1 | 39716 | 39931 |
| YP_009017678.1 | NC_023735_p64 | hypothetical protein | phrog_4282 | unknown function | unknown function | 1 | 47253 | 47894 |
| YP_009017637.1 | NC_023735_p23 | hypothetical protein | phrog_12541 | unknown function | unknown function | 1 | 21319 | 21969 |
| YP_009017685.1 | NC_023735_p71 | hypothetical protein | phrog_4678 | unknown function | unknown function | 1 | 51794 | 52342 |
| YP_009017640.1 | NC_023735_p26 | hypothetical protein | phrog_4270 | unknown function | unknown function | 1 | 24289 | 24642 |
| YP_009017659.1 | NC_023735_p45 | hypothetical protein | phrog_28747 | unknown function | unknown function | 1 | 40522 | 40794 |
| YP_009017616.1 | NC_023735_p2 | tail fiber protein | phrog_11419 | tail fiber protein | tail | 1 | 1788 | 3533 |
| YP_009017714.1 | NC_023735_p100 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69759 | 69962 |
| YP_009017652.1 | NC_023735_p38 | hypothetical protein | phrog_24913 | unknown function | unknown function | 1 | 38078 | 38704 |
| YP_009017694.1 | NC_023735_p80 | hypothetical protein | phrog_7996 | unknown function | unknown function | 1 | 59910 | 60173 |
| YP_009017701.1 | NC_023735_p87 | hypothetical protein | phrog_19093 | unknown function | unknown function | 1 | 62397 | 63032 |
| YP_009017703.1 | NC_023735_p89 | hypothetical protein | phrog_37300 | unknown function | unknown function | 1 | 63518 | 63757 |
| YP_009017664.1 | NC_023735_p50 | hypothetical protein | phrog_29055 | unknown function | unknown function | 1 | 42585 | 42692 |
| YP_009017644.1 | NC_023735_p30 | head protein | phrog_2645 | major tail protein | tail | 1 | 26415 | 27218 |
| YP_009017651.1 | NC_023735_p37 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 36697 | 38091 |
| YP_009017684.1 | NC_023735_p70 | hypothetical protein | phrog_4695 | unknown function | unknown function | 1 | 50892 | 51794 |
| YP_009017683.1 | NC_023735_p69 | hypothetical protein | phrog_2152 | unknown function | unknown function | 1 | 50002 | 50880 |
| YP_009017692.1 | NC_023735_p78 | hypothetical protein | phrog_33255 | unknown function | unknown function | 1 | 59236 | 59577 |
| YP_009017681.1 | NC_023735_p67 | hypothetical protein | phrog_4079 | unknown function | unknown function | 1 | 49130 | 49810 |
| YP_009017655.1 | NC_023735_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39445 | 39636 |
| YP_009017699.1 | NC_023735_p85 | hypothetical protein | phrog_7996 | unknown function | unknown function | 1 | 61811 | 62095 |
| YP_009017716.1 | NC_023735_p102 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 70167 | 71795 |
| YP_009017676.1 | NC_023735_p62 | hypothetical protein | phrog_27587 | unknown function | unknown function | 1 | 46382 | 46618 |
| YP_009017671.1 | NC_023735_p57 | hypothetical protein | phrog_29121 | unknown function | unknown function | 1 | 44885 | 45085 |
| YP_009017691.1 | NC_023735_p77 | hypothetical protein | phrog_4787 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 58658 | 59239 |
| YP_009017636.1 | NC_023735_p22 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 19977 | 21317 |
| YP_009017665.1 | NC_023735_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42789 | 43004 |
| YP_009017688.1 | NC_023735_p74 | hypothetical protein | phrog_19221 | unknown function | unknown function | 1 | 56754 | 57488 |
| YP_009017673.1 | NC_023735_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45311 | 45661 |
| YP_009017667.1 | NC_023735_p53 | hypothetical protein | phrog_32807 | unknown function | unknown function | 1 | 43258 | 43539 |
| YP_009017717.1 | NC_023735_p103 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 72091 | 72582 |
| YP_009017720.1 | NC_023735_p106 | hypothetical protein | phrog_4291 | RNA-dependent RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 73543 | 76257 |
| YP_009017618.1 | NC_023735_p4 | tail fiber protein | phrog_24580 | tail fiber protein | tail | 1 | 4449 | 5327 |
| YP_009017617.1 | NC_023735_p3 | hypothetical protein | phrog_18370 | unknown function | unknown function | 1 | 3530 | 4390 |
| YP_009017622.1 | NC_023735_p8 | hypothetical protein | phrog_4259 | unknown function | unknown function | 1 | 8195 | 8551 |
| YP_009017704.1 | NC_023735_p90 | hypothetical protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 63754 | 64467 |
| YP_009017697.1 | NC_023735_p83 | hypothetical protein | phrog_7996 | unknown function | unknown function | 1 | 61257 | 61511 |
| YP_009017690.1 | NC_023735_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58513 | 58656 |
| YP_009017675.1 | NC_023735_p61 | hypothetical protein | phrog_34332 | unknown function | unknown function | 1 | 46067 | 46297 |
| YP_009017648.1 | NC_023735_p34 | structural protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 29640 | 30020 |
| YP_009017630.1 | NC_023735_p16 | hypothetical protein | phrog_38171 | unknown function | unknown function | 1 | 14589 | 15254 |
| YP_009017696.1 | NC_023735_p82 | hypothetical protein | phrog_7996 | unknown function | unknown function | 1 | 60481 | 61254 |
| YP_009017679.1 | NC_023735_p65 | hypothetical protein | phrog_27818 | unknown function | unknown function | 1 | 48054 | 48440 |
| YP_009017672.1 | NC_023735_p58 | hypothetical protein | phrog_32424 | unknown function | unknown function | 1 | 45078 | 45311 |
| YP_009017702.1 | NC_023735_p88 | hypothetical protein | phrog_19093 | unknown function | unknown function | 1 | 63039 | 63521 |
| YP_009017628.1 | NC_023735_p14 | TerL | phrog_9 | terminase large subunit | head and packaging | 1 | 12293 | 14038 |
| YP_009017677.1 | NC_023735_p63 | hypothetical protein | phrog_6802 | unknown function | unknown function | 1 | 46716 | 47210 |
| YP_009017687.1 | NC_023735_p73 | hypothetical protein | phrog_19221 | unknown function | unknown function | 1 | 56269 | 56649 |
| YP_009017645.1 | NC_023735_p31 | hypothetical protein | phrog_22009 | unknown function | unknown function | 1 | 27232 | 27735 |
| YP_009017668.1 | NC_023735_p54 | hypothetical protein | phrog_30341 | unknown function | unknown function | 1 | 43558 | 43782 |
| YP_009017707.1 | NC_023735_p93 | hypothetical protein | phrog_37238 | unknown function | unknown function | 1 | 65370 | 65612 |
| YP_009017641.1 | NC_023735_p27 | structural protein | phrog_78 | tail terminator | connector | 1 | 24605 | 24907 |
| YP_009017662.1 | NC_023735_p48 | hypothetical protein | phrog_32469 | unknown function | unknown function | 1 | 41936 | 42214 |
| YP_009017657.1 | NC_023735_p43 | hypothetical protein | phrog_12653 | unknown function | unknown function | 1 | 39982 | 40149 |
| YP_009017626.1 | NC_023735_p12 | structural protein | phrog_4247 | virion structural protein | head and packaging | 1 | 10337 | 10684 |
| YP_009017660.1 | NC_023735_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40891 | 41121 |
| YP_009017711.1 | NC_023735_p97 | hypothetical protein | phrog_31149 | unknown function | unknown function | 1 | 66744 | 67298 |
| YP_009017682.1 | NC_023735_p68 | hypothetical protein | phrog_6038 | unknown function | unknown function | 1 | 49847 | 49990 |
| YP_009017620.1 | NC_023735_p6 | hypothetical protein | phrog_33609 | unknown function | unknown function | 1 | 7019 | 7321 |
| YP_009017674.1 | NC_023735_p60 | hypothetical protein | phrog_38041 | unknown function | unknown function | 1 | 45654 | 46070 |
| YP_009017646.1 | NC_023735_p32 | hypothetical protein | phrog_23770 | unknown function | unknown function | 1 | 27732 | 28799 |
| YP_009017700.1 | NC_023735_p86 | hypothetical protein | phrog_7996 | unknown function | unknown function | 1 | 62108 | 62392 |
| YP_009017666.1 | NC_023735_p52 | hypothetical protein | phrog_28025 | unknown function | unknown function | 1 | 43050 | 43229 |
| YP_009017721.1 | NC_023735_p107 | hypothetical protein | phrog_4303 | unknown function | unknown function | 1 | 76267 | 76509 |
| YP_009017713.1 | NC_023735_p99 | hypothetical protein | phrog_35414 | unknown function | unknown function | 1 | 68748 | 69698 |
| YP_009017698.1 | NC_023735_p84 | hypothetical protein | phrog_7996 | unknown function | unknown function | 1 | 61518 | 61811 |
| YP_009017624.1 | NC_023735_p10 | LysA | phrog_880 | endolysin | lysis | 1 | 9009 | 9806 |
| YP_009017639.1 | NC_023735_p25 | prohead protease | phrog_3270 | head maturation protease | head and packaging | 1 | 22127 | 24277 |
| YP_009017638.1 | NC_023735_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21981 | 22097 |
| YP_009017670.1 | NC_023735_p56 | hypothetical protein | phrog_25998 | unknown function | unknown function | 1 | 44650 | 44892 |
| YP_009017653.1 | NC_023735_p39 | hypothetical protein | phrog_33583 | unknown function | unknown function | 1 | 38550 | 38891 |
| YP_009017709.1 | NC_023735_p95 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65867 | 66109 |
| YP_009017642.1 | NC_023735_p28 | head protein | phrog_2645 | major tail protein | tail | 1 | 24923 | 25810 |
| YP_009017631.1 | NC_023735_p17 | hypothetical protein | phrog_7502 | unknown function | unknown function | 1 | 15271 | 16104 |
| YP_009017658.1 | NC_023735_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40228 | 40404 |
| YP_009017629.1 | NC_023735_p15 | hypothetical protein | phrog_14126 | unknown function | unknown function | 1 | 14185 | 14574 |
| YP_009017647.1 | NC_023735_p33 | LysB | phrog_102 | endolysin | lysis | 1 | 28827 | 29618 |
| YP_009017661.1 | NC_023735_p47 | hypothetical protein | phrog_29246 | unknown function | unknown function | 1 | 41599 | 41850 |
| YP_009017621.1 | NC_023735_p7 | tail fiber protein | phrog_38417 | hyaluronidase | other | 1 | 7338 | 8183 |
| YP_009017643.1 | NC_023735_p29 | hypothetical protein | phrog_4338 | unknown function | unknown function | 1 | 25842 | 26396 |
| YP_009017708.1 | NC_023735_p94 | hypothetical protein | phrog_29296 | unknown function | unknown function | 1 | 65727 | 65858 |
| YP_009017650.1 | NC_023735_p36 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 35866 | 36693 |
| YP_009017615.1 | NC_023735_p1 | tail fiber protein | phrog_33904 | tail fiber protein | tail | 1 | 115 | 1743 |
| YP_009017633.1 | NC_023735_p19 | structural protein | phrog_35934 | virion structural protein | head and packaging | 1 | 17204 | 18199 |
| YP_009017680.1 | NC_023735_p66 | hypothetical protein | phrog_7539 | unknown function | unknown function | 1 | 48806 | 49051 |
| YP_009017632.1 | NC_023735_p18 | hypothetical protein | phrog_7502 | unknown function | unknown function | 1 | 16104 | 17147 |
| YP_009017663.1 | NC_023735_p49 | hypothetical protein | phrog_26966 | unknown function | unknown function | 1 | 42303 | 42539 |
| YP_009017623.1 | NC_023735_p9 | hypothetical protein | phrog_4321 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8541 | 8951 |
| YP_009017619.1 | NC_023735_p5 | tail fiber protein | singleton | unknown function | unknown function | 1 | 5343 | 6959 |
| YP_009017705.1 | NC_023735_p91 | hypothetical protein | phrog_32271 | unknown function | unknown function | 1 | 64479 | 64694 |
| YP_009017695.1 | NC_023735_p81 | hypothetical protein | phrog_32781 | unknown function | unknown function | 1 | 60275 | 60484 |
| YP_009017635.1 | NC_023735_p21 | hypothetical protein | phrog_6291 | unknown function | unknown function | 1 | 19396 | 19935 |
| YP_009017715.1 | NC_023735_p101 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69959 | 70153 |
| YP_009017710.1 | NC_023735_p96 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66268 | 66741 |
| YP_009017689.1 | NC_023735_p75 | hypothetical protein | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 57614 | 58513 |
| YP_009017627.1 | NC_023735_p13 | hypothetical protein | phrog_24711 | unknown function | unknown function | 1 | 10681 | 12276 |
| YP_009017634.1 | NC_023735_p20 | hypothetical protein | phrog_7502 | unknown function | unknown function | 1 | 18201 | 19283 |
| YP_009017718.1 | NC_023735_p104 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 72684 | 73013 |
| YP_009017654.1 | NC_023735_p40 | hypothetical protein | phrog_5818 | unknown function | unknown function | 1 | 38884 | 39249 |
| YP_009017693.1 | NC_023735_p79 | hypothetical protein | phrog_7996 | unknown function | unknown function | 1 | 59597 | 59881 |