| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023736 |
Definition |
Ralstonia phage RSB2 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Kelmasvirus; Ralstonia virus RSB2. |
DB of origin |
REFSEQ |
Length |
40411 |
Host Name |
Ralstonia solanacearum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
61.75 |
Number of singletons |
18 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009017764.1 | NC_023736_p43 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 28150 | 28722 |
| YP_009017728.1 | NC_023736_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2993 | 3307 |
| YP_009017755.1 | NC_023736_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19815 | 20174 |
| YP_009017743.1 | NC_023736_p22 | hypothetical protein | phrog_30269 | unknown function | unknown function | 1 | 10785 | 11075 |
| YP_009017740.1 | NC_023736_p19 | hypothetical protein | phrog_31516 | unknown function | unknown function | 1 | 9753 | 10220 |
| YP_009017736.1 | NC_023736_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5636 | 5737 |
| YP_009017770.1 | NC_023736_p49 | packaging maturation protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 37559 | 37840 |
| YP_009017769.1 | NC_023736_p48 | lysis protein | phrog_920 | holin | lysis | 1 | 37359 | 37559 |
| YP_009017722.1 | NC_023736_p1 | hypothetical protein | phrog_30187 | unknown function | unknown function | 1 | 950 | 1162 |
| YP_009017745.1 | NC_023736_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11769 | 11909 |
| YP_009017761.1 | NC_023736_p40 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 24634 | 25212 |
| YP_009017766.1 | NC_023736_p45 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30939 | 34811 |
| YP_009017757.1 | NC_023736_p36 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20555 | 20869 |
| YP_009017725.1 | NC_023736_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2334 | 2576 |
| YP_009017751.1 | NC_023736_p30 | DNA polymerase-like protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 16127 | 18232 |
| YP_009017773.1 | NC_023736_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39865 | 40017 |
| YP_009017746.1 | NC_023736_p25 | ssDNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 11984 | 12673 |
| YP_009017772.1 | NC_023736_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39758 | 39877 |
| YP_009017723.1 | NC_023736_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1692 | 1850 |
| YP_009017763.1 | NC_023736_p42 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 27711 | 28157 |
| YP_009017737.1 | NC_023736_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5737 | 5961 |
| YP_009017756.1 | NC_023736_p35 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 20119 | 20553 |
| YP_009017730.1 | NC_023736_p9 | hypothetical protein | phrog_37607 | unknown function | unknown function | 1 | 3661 | 3846 |
| YP_009017762.1 | NC_023736_p41 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 25227 | 27593 |
| YP_009017729.1 | NC_023736_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3297 | 3674 |
| YP_009017768.1 | NC_023736_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37101 | 37280 |
| YP_009017748.1 | NC_023736_p27 | lysozyme-like protein | phrog_822 | amidase | lysis | 1 | 13145 | 13615 |
| YP_009017754.1 | NC_023736_p33 | exonuclease-like protein | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18931 | 19794 |
| YP_009017724.1 | NC_023736_p3 | hypothetical protein | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1861 | 2274 |
| YP_009017758.1 | NC_023736_p37 | head to tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 20874 | 22469 |
| YP_009017731.1 | NC_023736_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3859 | 4089 |
| YP_009017733.1 | NC_023736_p12 | hypothetical protein | phrog_35025 | unknown function | unknown function | 1 | 4335 | 4664 |
| YP_009017738.1 | NC_023736_p17 | DNA ligase-like protein | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 5954 | 6883 |
| YP_009017727.1 | NC_023736_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2841 | 2996 |
| YP_009017753.1 | NC_023736_p32 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 18707 | 18907 |
| YP_009017726.1 | NC_023736_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2644 | 2820 |
| YP_009017739.1 | NC_023736_p18 | RNA polymerase-like protein | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7145 | 9736 |
| YP_009017734.1 | NC_023736_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4721 | 5245 |
| YP_009017744.1 | NC_023736_p23 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 11072 | 11749 |
| YP_009017752.1 | NC_023736_p31 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 18269 | 18691 |
| YP_009017749.1 | NC_023736_p28 | hypothetical protein | phrog_13935 | unknown function | unknown function | 1 | 13637 | 14233 |
| YP_009017741.1 | NC_023736_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10259 | 10435 |
| YP_009017771.1 | NC_023736_p50 | packaging maturation protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 37862 | 39643 |
| YP_009017732.1 | NC_023736_p11 | hypothetical protein | phrog_6379 | unknown function | unknown function | 1 | 4056 | 4322 |
| YP_009017759.1 | NC_023736_p38 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 22546 | 23355 |
| YP_009017747.1 | NC_023736_p26 | endonuclease-like protein | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12675 | 13142 |
| YP_009017765.1 | NC_023736_p44 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 28732 | 30918 |
| YP_009017767.1 | NC_023736_p46 | tail fiber protein | phrog_4492 | tail fiber protein | tail | 1 | 34879 | 36972 |
| YP_009017742.1 | NC_023736_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10432 | 10725 |
| YP_009017735.1 | NC_023736_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5245 | 5634 |
| YP_009017750.1 | NC_023736_p29 | DNA primase/helicase-like protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 14315 | 16003 |
| YP_009017760.1 | NC_023736_p39 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23426 | 24382 |