| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023739 |
Definition |
Mycobacterium phage BillKnuckles, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
51821 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
63.43 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009018229.1 | NC_023739_p2 | HNH domain | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 748 | 1044 |
| YP_009018246.1 | NC_023739_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14046 | 14426 |
| YP_009018266.1 | NC_023739_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31890 | 32162 |
| YP_009018259.1 | NC_023739_p32 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 24816 | 26669 |
| YP_009018311.1 | NC_023739_p84 | hypothetical protein | phrog_15443 | unknown function | unknown function | -1 | 50605 | 50889 |
| YP_009018233.1 | NC_023739_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3460 | 4170 |
| YP_009018245.1 | NC_023739_p18 | hypothetical protein | phrog_2348 | unknown function | unknown function | 1 | 13921 | 14049 |
| YP_009018250.1 | NC_023739_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16253 | 17052 |
| YP_009018251.1 | NC_023739_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16253 | 16630 |
| YP_009018257.1 | NC_023739_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24115 | 24447 |
| YP_009018278.1 | NC_023739_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37484 | 37624 |
| YP_009018242.1 | NC_023739_p15 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11758 | 12255 |
| YP_009018287.1 | NC_023739_p60 | DnaB helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42432 | 43253 |
| YP_009018254.1 | NC_023739_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21635 | 21817 |
| YP_009018277.1 | NC_023739_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36700 | 37476 |
| YP_009018234.1 | NC_023739_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4184 | 4444 |
| YP_009018240.1 | NC_023739_p13 | portal | phrog_104 | portal protein | head and packaging | 1 | 9350 | 10816 |
| YP_009018237.1 | NC_023739_p10 | LysA | phrog_317 | endolysin | lysis | 1 | 5290 | 6684 |
| YP_009018305.1 | NC_023739_p78 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 48981 | 49136 |
| YP_009018285.1 | NC_023739_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41839 | 42021 |
| YP_009018228.1 | NC_023739_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 599 | 751 |
| YP_009018230.1 | NC_023739_p3 | tail fiber | phrog_226 | minor tail protein | tail | 1 | 1080 | 1520 |
| YP_009018238.1 | NC_023739_p11 | LysB | phrog_102 | endolysin | lysis | 1 | 6674 | 7642 |
| YP_009018299.1 | NC_023739_p72 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47074 | 47277 |
| YP_009018253.1 | NC_023739_p26 | minor tail | phrog_106 | minor tail protein | tail | 1 | 19559 | 21616 |
| YP_009018241.1 | NC_023739_p14 | head assembly protease | phrog_193 | head maturation protease | head and packaging | 1 | 10813 | 11697 |
| YP_009018252.1 | NC_023739_p25 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 17064 | 19535 |
| YP_009018289.1 | NC_023739_p62 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43423 | 43545 |
| YP_009018273.1 | NC_023739_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35406 | 35636 |
| YP_009018269.1 | NC_023739_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32418 | 32660 |
| YP_009018296.1 | NC_023739_p69 | repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45738 | 46250 |
| YP_009018284.1 | NC_023739_p57 | endoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41361 | 41852 |
| YP_009018235.1 | NC_023739_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4452 | 4709 |
| YP_009018283.1 | NC_023739_p56 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41107 | 41364 |
| YP_009018248.1 | NC_023739_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14825 | 15271 |
| YP_009018300.1 | NC_023739_p73 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47274 | 47462 |
| YP_009018302.1 | NC_023739_p75 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 47626 | 47754 |
| YP_009018271.1 | NC_023739_p44 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33039 | 33515 |
| YP_009018310.1 | NC_023739_p83 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 50384 | 50572 |
| YP_009018290.1 | NC_023739_p63 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43542 | 43835 |
| YP_009018244.1 | NC_023739_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13547 | 13924 |
| YP_009018281.1 | NC_023739_p54 | DNA primase/intein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39158 | 40699 |
| YP_009018293.1 | NC_023739_p66 | hypothetical protein | phrog_1311 | unknown function | unknown function | -1 | 44859 | 44999 |
| YP_009018231.1 | NC_023739_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1808 | 2119 |
| YP_009018288.1 | NC_023739_p61 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43253 | 43426 |
| YP_009018272.1 | NC_023739_p45 | DNA pol I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33540 | 35369 |
| YP_009018255.1 | NC_023739_p28 | minor tail | phrog_110 | minor tail protein | tail | 1 | 21817 | 23619 |
| YP_009018243.1 | NC_023739_p16 | capsid | phrog_10 | major head protein | head and packaging | 1 | 12288 | 13481 |
| YP_009018308.1 | NC_023739_p81 | hypothetical protein | phrog_5419 | unknown function | unknown function | -1 | 49788 | 50042 |
| YP_009018303.1 | NC_023739_p76 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 47775 | 47924 |
| YP_009018282.1 | NC_023739_p55 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40952 | 41110 |
| YP_009018313.1 | NC_023739_p86 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51279 | 51482 |
| YP_009018264.1 | NC_023739_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29831 | 30115 |
| YP_009018279.1 | NC_023739_p52 | RDF | phrog_221 | metallo-phosphoesterase | other | -1 | 37624 | 38391 |
| YP_009018267.1 | NC_023739_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32159 | 32329 |
| YP_009018258.1 | NC_023739_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24444 | 24791 |
| YP_009018291.1 | NC_023739_p64 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43839 | 44021 |
| YP_009018265.1 | NC_023739_p38 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 30267 | 31769 |
| YP_009018292.1 | NC_023739_p65 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44048 | 44866 |
| YP_009018286.1 | NC_023739_p59 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42130 | 42435 |
| YP_009018280.1 | NC_023739_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38388 | 39161 |
| YP_009018298.1 | NC_023739_p71 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 46808 | 47077 |
| YP_009018294.1 | NC_023739_p67 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 44996 | 45304 |
| YP_009018249.1 | NC_023739_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15280 | 16131 |
| YP_009018232.1 | NC_023739_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2380 | 3450 |
| YP_009018270.1 | NC_023739_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32657 | 33016 |
| YP_009018312.1 | NC_023739_p85 | hypothetical protein | phrog_10520 | unknown function | unknown function | -1 | 50886 | 51113 |
| YP_009018295.1 | NC_023739_p68 | repressor | phrog_1809 | unknown function | unknown function | -1 | 45301 | 45696 |
| YP_009018261.1 | NC_023739_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28230 | 28553 |
| YP_009018236.1 | NC_023739_p9 | HNH domain | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4709 | 5290 |
| YP_009018239.1 | NC_023739_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7662 | 9350 |
| YP_009018256.1 | NC_023739_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23657 | 24103 |
| YP_009018304.1 | NC_023739_p77 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 48223 | 48897 |
| YP_009018262.1 | NC_023739_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28563 | 28754 |
| YP_009018309.1 | NC_023739_p82 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 50142 | 50387 |
| YP_009018268.1 | NC_023739_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32326 | 32421 |
| YP_009018247.1 | NC_023739_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14426 | 14821 |
| YP_009018297.1 | NC_023739_p70 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46512 | 46811 |
| YP_009018307.1 | NC_023739_p80 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 49612 | 49695 |
| YP_009018275.1 | NC_023739_p48 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 36188 | 36520 |
| YP_009018276.1 | NC_023739_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36521 | 36703 |
| YP_009018263.1 | NC_023739_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28751 | 29710 |
| YP_009018274.1 | NC_023739_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35667 | 36158 |
| YP_009018301.1 | NC_023739_p74 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47462 | 47629 |
| YP_009018260.1 | NC_023739_p33 | tail | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26662 | 28140 |
| YP_009018306.1 | NC_023739_p79 | hypothetical protein | phrog_10288 | unknown function | unknown function | -1 | 49344 | 49583 |