| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023742 |
Definition |
Mycobacterium phage Akoma, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus. |
DB of origin |
REFSEQ |
Length |
68711 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
104 |
%GC |
67.54 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009018583.1 | NC_023742_p73 | hypothetical protein | phrog_4885 | unknown function | unknown function | 1 | 58934 | 59191 |
| YP_009018562.1 | NC_023742_p52 | type III restriction helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 45461 | 47260 |
| YP_009018605.1 | NC_023742_p95 | hypothetical protein | phrog_6114 | unknown function | unknown function | -1 | 64584 | 64763 |
| YP_009018527.1 | NC_023742_p17 | hypothetical protein | phrog_565 | holin | lysis | 1 | 14566 | 15000 |
| YP_009018557.1 | NC_023742_p47 | LysB | phrog_102 | endolysin | lysis | 1 | 41537 | 42601 |
| YP_009018548.1 | NC_023742_p38 | hypothetical protein | phrog_3329 | unknown function | unknown function | 1 | 35526 | 36875 |
| YP_009018587.1 | NC_023742_p77 | hypothetical protein | phrog_928 | unknown function | unknown function | 1 | 59885 | 60412 |
| YP_009018594.1 | NC_023742_p84 | hypothetical protein | phrog_6338 | unknown function | unknown function | -1 | 61691 | 61849 |
| YP_009018539.1 | NC_023742_p29 | hypothetical protein | phrog_838 | unknown function | unknown function | 1 | 26147 | 27577 |
| YP_009018595.1 | NC_023742_p85 | hypothetical protein | phrog_4392 | unknown function | unknown function | -1 | 61842 | 62195 |
| YP_009018578.1 | NC_023742_p68 | hypothetical protein | phrog_1016 | unknown function | unknown function | 1 | 57286 | 57534 |
| YP_009018596.1 | NC_023742_p86 | hypothetical protein | phrog_7541 | unknown function | unknown function | -1 | 62195 | 62527 |
| YP_009018517.1 | NC_023742_p7 | hypothetical protein | phrog_6317 | unknown function | unknown function | -1 | 4615 | 4866 |
| YP_009018602.1 | NC_023742_p92 | hypothetical protein | phrog_6428 | unknown function | unknown function | -1 | 63954 | 64166 |
| YP_009018546.1 | NC_023742_p36 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34280 | 34933 |
| YP_009018540.1 | NC_023742_p30 | hypothetical protein | phrog_837 | minor tail protein | tail | 1 | 27574 | 28617 |
| YP_009018554.1 | NC_023742_p44 | hypothetical protein | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39028 | 39465 |
| YP_009018529.1 | NC_023742_p19 | hypothetical protein | phrog_2344 | unknown function | unknown function | 1 | 15461 | 15940 |
| YP_009018601.1 | NC_023742_p91 | hypothetical protein | phrog_6199 | unknown function | unknown function | -1 | 63530 | 63889 |
| YP_009018573.1 | NC_023742_p63 | hypothetical protein | phrog_6735 | unknown function | unknown function | -1 | 55010 | 55129 |
| YP_009018521.1 | NC_023742_p11 | hypothetical protein | phrog_776 | portal protein | head and packaging | 1 | 6314 | 8218 |
| YP_009018566.1 | NC_023742_p56 | RepA | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 48461 | 51064 |
| YP_009018551.1 | NC_023742_p41 | hypothetical protein | phrog_892 | tail fiber protein | tail | 1 | 37604 | 38014 |
| YP_009018609.1 | NC_023742_p99 | hypothetical protein | phrog_2972 | unknown function | unknown function | -1 | 67073 | 67309 |
| YP_009018547.1 | NC_023742_p37 | hypothetical protein | phrog_282 | unknown function | unknown function | 1 | 34930 | 35529 |
| YP_009018600.1 | NC_023742_p90 | hypothetical protein | phrog_5355 | unknown function | unknown function | -1 | 63299 | 63454 |
| YP_009018519.1 | NC_023742_p9 | hypothetical protein | phrog_6276 | unknown function | unknown function | -1 | 5548 | 5844 |
| YP_009018598.1 | NC_023742_p88 | hypothetical protein | phrog_7490 | unknown function | unknown function | -1 | 62808 | 62996 |
| YP_009018571.1 | NC_023742_p61 | hypothetical protein | phrog_3025 | unknown function | unknown function | -1 | 54091 | 54537 |
| YP_009018608.1 | NC_023742_p98 | hypothetical protein | phrog_1221 | unknown function | unknown function | -1 | 65887 | 66999 |
| YP_009018590.1 | NC_023742_p80 | HNH domain | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 60946 | 61275 |
| YP_009018550.1 | NC_023742_p40 | hypothetical protein | phrog_941 | unknown function | unknown function | 1 | 37350 | 37586 |
| YP_009018560.1 | NC_023742_p50 | hypothetical protein | phrog_7519 | unknown function | unknown function | -1 | 44878 | 45099 |
| YP_009018607.1 | NC_023742_p97 | hypothetical protein | phrog_1010 | unknown function | unknown function | -1 | 65325 | 65813 |
| YP_009018534.1 | NC_023742_p24 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 18474 | 18995 |
| YP_009018572.1 | NC_023742_p62 | hypothetical protein | phrog_993 | unknown function | unknown function | -1 | 54534 | 55010 |
| YP_009018591.1 | NC_023742_p81 | hypothetical protein | phrog_4461 | unknown function | unknown function | -1 | 61262 | 61366 |
| YP_009018593.1 | NC_023742_p83 | hypothetical protein | phrog_6460 | unknown function | unknown function | -1 | 61524 | 61694 |
| YP_009018537.1 | NC_023742_p27 | tail assembly chaperone | phrog_1118 | tail assembly chaperone | tail | 1 | 19777 | 20370 |
| YP_009018522.1 | NC_023742_p12 | portal | phrog_859 | portal protein | head and packaging | 1 | 8208 | 10640 |
| YP_009018588.1 | NC_023742_p78 | hypothetical protein | phrog_4974 | unknown function | unknown function | -1 | 60425 | 60613 |
| YP_009018575.1 | NC_023742_p65 | hypothetical protein | phrog_6105 | unknown function | unknown function | -1 | 55393 | 55743 |
| YP_009018563.1 | NC_023742_p53 | hypothetical protein | phrog_6400 | unknown function | unknown function | -1 | 47257 | 47619 |
| YP_009018535.1 | NC_023742_p25 | hypothetical protein | phrog_901 | unknown function | unknown function | 1 | 19006 | 19380 |
| YP_009018544.1 | NC_023742_p34 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 33452 | 33835 |
| YP_009018518.1 | NC_023742_p8 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 4863 | 5414 |
| YP_009018603.1 | NC_023742_p93 | hypothetical protein | phrog_5411 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 64166 | 64546 |
| YP_009018555.1 | NC_023742_p45 | hypothetical protein | phrog_636 | unknown function | unknown function | -1 | 39510 | 40208 |
| YP_009018604.1 | NC_023742_p94 | hypothetical protein | singleton | unknown function | unknown function | -1 | 64546 | 64587 |
| YP_009018581.1 | NC_023742_p71 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 57919 | 58518 |
| YP_009018589.1 | NC_023742_p79 | hypothetical protein | phrog_6691 | unknown function | unknown function | -1 | 60668 | 60949 |
| YP_009018549.1 | NC_023742_p39 | hypothetical protein | phrog_915 | unknown function | unknown function | 1 | 36898 | 37266 |
| YP_009018515.1 | NC_023742_p5 | ParB | phrog_2159 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2148 | 2717 |
| YP_009018523.1 | NC_023742_p13 | hypothetical protein | phrog_2069 | unknown function | unknown function | 1 | 10640 | 10846 |
| YP_009018585.1 | NC_023742_p75 | hypothetical protein | phrog_6511 | unknown function | unknown function | 1 | 59393 | 59545 |
| YP_009018552.1 | NC_023742_p42 | hypothetical protein | phrog_2804 | virion structural protein | head and packaging | 1 | 38014 | 38739 |
| YP_009018532.1 | NC_023742_p22 | hypothetical protein | phrog_6514 | unknown function | unknown function | -1 | 17496 | 17606 |
| YP_009018559.1 | NC_023742_p49 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43265 | 44878 |
| YP_009018561.1 | NC_023742_p51 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 45146 | 45415 |
| YP_009018579.1 | NC_023742_p69 | hypothetical protein | phrog_6404 | unknown function | unknown function | 1 | 57531 | 57761 |
| YP_009018553.1 | NC_023742_p43 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 38795 | 39031 |
| YP_009018614.1 | NC_023742_p104 | hypothetical protein | phrog_5930 | unknown function | unknown function | 1 | 68360 | 68662 |
| YP_009018520.1 | NC_023742_p10 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 5949 | 6284 |
| YP_009018558.1 | NC_023742_p48 | hypothetical protein | phrog_870 | unknown function | unknown function | -1 | 42671 | 43216 |
| YP_009018543.1 | NC_023742_p33 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 32223 | 33425 |
| YP_009018512.1 | NC_023742_p2 | hypothetical protein | phrog_6919 | unknown function | unknown function | 1 | 690 | 854 |
| YP_009018606.1 | NC_023742_p96 | hypothetical protein | phrog_6469 | unknown function | unknown function | -1 | 64760 | 65227 |
| YP_009018580.1 | NC_023742_p70 | hypothetical protein | phrog_4938 | unknown function | unknown function | 1 | 57758 | 57922 |
| YP_009018599.1 | NC_023742_p89 | hypothetical protein | phrog_2089 | unknown function | unknown function | -1 | 63090 | 63284 |
| YP_009018516.1 | NC_023742_p6 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 2696 | 4474 |
| YP_009018536.1 | NC_023742_p26 | tail assembly chaperone | phrog_5 | tail completion or Neck1 protein | connector | 1 | 19364 | 19777 |
| YP_009018513.1 | NC_023742_p3 | hypothetical protein | phrog_6307 | unknown function | unknown function | 1 | 851 | 1072 |
| YP_009018545.1 | NC_023742_p35 | hypothetical protein | phrog_948 | unknown function | unknown function | 1 | 33844 | 34269 |
| YP_009018577.1 | NC_023742_p67 | hypothetical protein | phrog_996 | unknown function | unknown function | 1 | 56483 | 57250 |
| YP_009018538.1 | NC_023742_p28 | tapemeasure protein | phrog_934 | tail length tape measure protein | tail | 1 | 20396 | 26137 |
| YP_009018528.1 | NC_023742_p18 | hypothetical protein | phrog_2272 | unknown function | unknown function | 1 | 15003 | 15464 |
| YP_009018565.1 | NC_023742_p55 | hypothetical protein | phrog_1371 | unknown function | unknown function | -1 | 47945 | 48418 |
| YP_009018556.1 | NC_023742_p46 | LysA | phrog_700 | endolysin | lysis | 1 | 40271 | 41536 |
| YP_009018569.1 | NC_023742_p59 | hypothetical protein | phrog_6482 | unknown function | unknown function | -1 | 53685 | 53960 |
| YP_009018592.1 | NC_023742_p82 | hypothetical protein | phrog_6304 | unknown function | unknown function | -1 | 61363 | 61527 |
| YP_009018533.1 | NC_023742_p23 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 17737 | 18477 |
| YP_009018514.1 | NC_023742_p4 | QueC | phrog_2302 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 1069 | 2151 |
| YP_009018611.1 | NC_023742_p101 | hypothetical protein | phrog_5733 | unknown function | unknown function | 1 | 67671 | 67916 |
| YP_009018582.1 | NC_023742_p72 | hypothetical protein | phrog_1031 | unknown function | unknown function | 1 | 58523 | 58927 |
| YP_009018541.1 | NC_023742_p31 | hypothetical protein | phrog_746 | minor tail protein | tail | 1 | 28614 | 30842 |
| YP_009018584.1 | NC_023742_p74 | hypothetical protein | phrog_1306 | unknown function | unknown function | -1 | 59204 | 59338 |
| YP_009018612.1 | NC_023742_p102 | hypothetical protein | phrog_6097 | unknown function | unknown function | 1 | 67913 | 68149 |
| YP_009018526.1 | NC_023742_p16 | hypothetical protein | phrog_970 | unknown function | unknown function | 1 | 13964 | 14569 |
| YP_009018574.1 | NC_023742_p64 | hypothetical protein | phrog_6656 | unknown function | unknown function | -1 | 55166 | 55396 |
| YP_009018530.1 | NC_023742_p20 | hypothetical protein | phrog_2525 | unknown function | unknown function | 1 | 15937 | 16269 |
| YP_009018525.1 | NC_023742_p15 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 13140 | 13949 |
| YP_009018568.1 | NC_023742_p58 | DNA pol I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 51868 | 53685 |
| YP_009018524.1 | NC_023742_p14 | capsid | phrog_777 | major head protein | head and packaging | 1 | 11026 | 13041 |
| YP_009018567.1 | NC_023742_p57 | hypothetical protein | phrog_6342 | unknown function | unknown function | -1 | 51098 | 51871 |
| YP_009018597.1 | NC_023742_p87 | hypothetical protein | phrog_7414 | unknown function | unknown function | -1 | 62524 | 62811 |
| YP_009018576.1 | NC_023742_p66 | hypothetical protein | phrog_982 | unknown function | unknown function | -1 | 55820 | 56089 |
| YP_009018570.1 | NC_023742_p60 | hypothetical protein | phrog_6936 | unknown function | unknown function | -1 | 53957 | 54094 |
| YP_009018586.1 | NC_023742_p76 | hypothetical protein | phrog_6229 | unknown function | unknown function | 1 | 59556 | 59903 |
| YP_009018542.1 | NC_023742_p32 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 30844 | 32226 |
| YP_009018564.1 | NC_023742_p54 | hypothetical protein | phrog_3892 | unknown function | unknown function | -1 | 47619 | 47948 |
| YP_009018613.1 | NC_023742_p103 | hypothetical protein | phrog_6432 | unknown function | unknown function | 1 | 68140 | 68295 |
| YP_009018511.1 | NC_023742_p1 | ParB | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 693 |
| YP_009018610.1 | NC_023742_p100 | hypothetical protein | phrog_4825 | unknown function | unknown function | 1 | 67487 | 67660 |
| YP_009018531.1 | NC_023742_p21 | major tail subunit | phrog_792 | major tail protein | tail | 1 | 16357 | 17436 |