Genomic map of Mycobacterium virus Gumbie (NC_023746)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023746
Definition
Mycobacterium phage GUmbie, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus.
DB of origin
REFSEQ
Length
57387
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
104
%GC
61.36
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009018977.1 NC_023746_p101 Ser/Thr kinase domain phrog_3297 kinase other 1 55573 56046
YP_009018972.1 NC_023746_p96 AlpA phrog_3813 unknown function unknown function 1 53123 53314
YP_009018945.1 NC_023746_p69 hypothetical protein phrog_3171 replication initiation protein DNA, RNA and nucleotide metabolism 1 45769 46728
YP_009018920.1 NC_023746_p44 HTH DNA binding phrog_6267 transcriptional repressor transcription regulation 1 34354 34701
YP_009018925.1 NC_023746_p49 hypothetical protein phrog_12427 unknown function unknown function 1 36494 36778
YP_009018933.1 NC_023746_p57 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 39435 39716
YP_009018937.1 NC_023746_p61 hypothetical protein phrog_2060 DNA methyltransferase other 1 40460 40801
YP_009018882.1 NC_023746_p6 major capsid phrog_267 major head protein head and packaging 1 5064 5885
YP_009018909.1 NC_023746_p33 hypothetical protein phrog_404 minor tail protein tail 1 28784 29158
YP_009018887.1 NC_023746_p11 major tail subunit phrog_476 major tail protein tail 1 7625 8434
YP_009018949.1 NC_023746_p73 hypothetical protein phrog_5892 unknown function unknown function 1 47367 47564
YP_009018929.1 NC_023746_p53 hypothetical protein phrog_1849 unknown function unknown function 1 37837 38118
YP_009018888.1 NC_023746_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8572 9508
YP_009018936.1 NC_023746_p60 hypothetical protein phrog_1834 unknown function unknown function 1 40233 40463
YP_009018906.1 NC_023746_p30 LysA phrog_700 endolysin lysis 1 26344 27537
YP_009018900.1 NC_023746_p24 hypothetical protein phrog_754 minor tail protein tail 1 24269 25093
YP_009018980.1 NC_023746_p104 HNH endonuclease domain phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 56919 57245
YP_009018902.1 NC_023746_p26 hypothetical protein phrog_411 unknown function unknown function 1 25445 25741
YP_009018974.1 NC_023746_p98 hypothetical protein phrog_1385 unknown function unknown function 1 53709 53951
YP_009018950.1 NC_023746_p74 MPME2 phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 47610 47981
YP_009018931.1 NC_023746_p55 WhiB phrog_1333 unknown function unknown function 1 38453 38956
YP_009018890.1 NC_023746_p14 tapemeasure phrog_1942 tail length tape measure protein tail 1 9527 13012
YP_009018951.1 NC_023746_p75 hypothetical protein phrog_24183 unknown function unknown function 1 47968 48375
YP_009018970.1 NC_023746_p94 hypothetical protein phrog_1869 unknown function unknown function 1 52798 52962
YP_009018932.1 NC_023746_p56 hypothetical protein phrog_2096 unknown function unknown function 1 38953 39438
YP_009018926.1 NC_023746_p50 hypothetical protein phrog_1816 unknown function unknown function 1 36775 36963
YP_009018911.1 NC_023746_p35 DnaQ-like phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29402 30223
YP_009018976.1 NC_023746_p100 N-acetylgalactosaminyl transferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 54132 55568
YP_009018921.1 NC_023746_p45 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 34760 35764
YP_009018979.1 NC_023746_p103 N-acetylglucosaminyl transferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 56296 56919
YP_009018910.1 NC_023746_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29155 29415
YP_009018963.1 NC_023746_p87 hypothetical protein phrog_1545 unknown function unknown function 1 50971 51108
YP_009018891.1 NC_023746_p15 minor tail subunit phrog_106 minor tail protein tail 1 13013 14722
YP_009018930.1 NC_023746_p54 hypothetical protein phrog_658 unknown function unknown function 1 38115 38462
YP_009018962.1 NC_023746_p86 hypothetical protein phrog_1091 unknown function unknown function 1 50787 50966
YP_009018947.1 NC_023746_p71 hypothetical protein phrog_7196 unknown function unknown function 1 46988 47179
YP_009018885.1 NC_023746_p9 hypothetical protein phrog_1929 head-tail connector protein connector 1 6796 7122
YP_009018881.1 NC_023746_p5 scaffolding phrog_2592 head scaffolding protein head and packaging 1 4452 5045
YP_009018903.1 NC_023746_p27 hypothetical protein phrog_932 unknown function unknown function 1 25748 25897
YP_009018879.1 NC_023746_p3 portal phrog_104 portal protein head and packaging 1 2256 3626
YP_009018895.1 NC_023746_p19 D-Ala-D-Ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 19936 21822
YP_009018916.1 NC_023746_p40 HTH DNA binding phrog_66 excisionase and transcriptional regulator integration and excision -1 30989 31183
YP_009018948.1 NC_023746_p72 hypothetical protein phrog_1943 unknown function unknown function 1 47176 47370
YP_009018922.1 NC_023746_p46 hypothetical protein phrog_2025 unknown function unknown function 1 35761 35976
YP_009018959.1 NC_023746_p83 hypothetical protein phrog_2939 unknown function unknown function 1 50124 50336
YP_009018914.1 NC_023746_p38 PLA2-like domain phrog_3693 unknown function unknown function -1 30654 30797
YP_009018975.1 NC_023746_p99 hypothetical protein phrog_2057 unknown function unknown function 1 53944 54105
YP_009018943.1 NC_023746_p67 hypothetical protein phrog_2070 unknown function unknown function 1 44915 45214
YP_009018904.1 NC_023746_p28 hypothetical protein phrog_1172 unknown function unknown function 1 25894 26034
YP_009018935.1 NC_023746_p59 hypothetical protein phrog_2078 unknown function unknown function 1 40078 40233
YP_009018892.1 NC_023746_p16 minor tail subunit phrog_110 minor tail protein tail 1 14805 16514
YP_009018964.1 NC_023746_p88 hypothetical protein phrog_12331 unknown function unknown function 1 51105 51233
YP_009018965.1 NC_023746_p89 hypothetical protein phrog_4126 unknown function unknown function 1 51230 51349
YP_009018969.1 NC_023746_p93 MerR-like phrog_2474 MerR-like transcriptional regulator transcription regulation 1 52577 52801
YP_009018913.1 NC_023746_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30521 30616
YP_009018919.1 NC_023746_p43 hypothetical protein phrog_3949 transcriptional repressor transcription regulation -1 33709 34242
YP_009018917.1 NC_023746_p41 integrase (Y-int) phrog_1 integrase integration and excision 1 31614 32912
YP_009018915.1 NC_023746_p39 hypothetical protein phrog_2437 unknown function unknown function -1 30788 30937
YP_009018960.1 NC_023746_p84 hypothetical protein phrog_1901 unknown function unknown function 1 50333 50527
YP_009018898.1 NC_023746_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23367 23621
YP_009018894.1 NC_023746_p18 minor tail subunit phrog_346 minor tail protein tail 1 17402 19939
YP_009018938.1 NC_023746_p62 AAA ATPase phrog_1366 unknown function unknown function 1 40798 41679
YP_009018877.1 NC_023746_p1 terminase small subunit phrog_226 minor tail protein tail 1 110 565
YP_009018884.1 NC_023746_p8 hypothetical protein phrog_763 head-tail adaptor connector 1 6460 6789
YP_009018878.1 NC_023746_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 588 2225
YP_009018958.1 NC_023746_p82 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision 1 49904 50071
YP_009018923.1 NC_023746_p47 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 36062 36259
YP_009018893.1 NC_023746_p17 minor tail subunit phrog_732 minor tail protein tail 1 16557 17405
YP_009018927.1 NC_023746_p51 hypothetical protein phrog_31242 unknown function unknown function 1 36960 37460
YP_009018968.1 NC_023746_p92 hypothetical protein phrog_1467 unknown function unknown function 1 51823 52467
YP_009018896.1 NC_023746_p20 hypothetical protein phrog_2106 minor tail protein tail 1 21819 22985
YP_009018954.1 NC_023746_p78 hypothetical protein phrog_19489 unknown function unknown function 1 48699 48941
YP_009018899.1 NC_023746_p23 hypothetical protein phrog_2012 minor tail protein tail 1 23634 24272
YP_009018905.1 NC_023746_p29 hypothetical protein phrog_747 unknown function unknown function 1 26096 26347
YP_009018924.1 NC_023746_p48 hypothetical protein phrog_13720 unknown function unknown function 1 36303 36497
YP_009018957.1 NC_023746_p81 hypothetical protein phrog_14412 unknown function unknown function 1 49407 49907
YP_009018918.1 NC_023746_p42 hypothetical protein phrog_1948 unknown function unknown function -1 32991 33446
YP_009018967.1 NC_023746_p91 hypothetical protein phrog_2247 unknown function unknown function 1 51575 51826
YP_009018940.1 NC_023746_p64 DNA methylase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 42035 44554
YP_009018953.1 NC_023746_p77 hypothetical protein phrog_3647 unknown function unknown function 1 48541 48702
YP_009018912.1 NC_023746_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30241 30531
YP_009018956.1 NC_023746_p80 hypothetical protein phrog_2142 unknown function unknown function 1 49078 49410
YP_009018942.1 NC_023746_p66 hypothetical protein phrog_2704 unknown function unknown function 1 44769 44918
YP_009018944.1 NC_023746_p68 GIY-YIG domain phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 45215 45769
YP_009018889.1 NC_023746_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8572 9123
YP_009018955.1 NC_023746_p79 hypothetical protein phrog_1311 unknown function unknown function 1 48938 49081
YP_009018908.1 NC_023746_p32 holin phrog_443 holin lysis 1 28554 28787
YP_009018901.1 NC_023746_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25099 25296
YP_009018973.1 NC_023746_p97 hypothetical protein phrog_1186 unknown function unknown function 1 53311 53712
YP_009018971.1 NC_023746_p95 hypothetical protein phrog_1694 unknown function unknown function 1 52968 53126
YP_009018897.1 NC_023746_p21 hypothetical protein phrog_240 head protein head and packaging 1 23003 23344
YP_009018939.1 NC_023746_p63 HNH endonuclease domain phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41676 42038
YP_009018907.1 NC_023746_p31 LysB phrog_102 endolysin lysis 1 27537 28538
YP_009018941.1 NC_023746_p65 hypothetical protein phrog_7443 unknown function unknown function 1 44551 44772
YP_009018880.1 NC_023746_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3613 4368
YP_009018928.1 NC_023746_p52 hypothetical protein phrog_8015 unknown function unknown function 1 37478 37759
YP_009018934.1 NC_023746_p58 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39713 40078
YP_009018946.1 NC_023746_p70 hypothetical protein phrog_2080 unknown function unknown function 1 46728 46991
YP_009018952.1 NC_023746_p76 hypothetical protein phrog_15751 unknown function unknown function 1 48332 48544
YP_009018961.1 NC_023746_p85 hypothetical protein phrog_6625 unknown function unknown function 1 50527 50790
YP_009018886.1 NC_023746_p10 hypothetical protein phrog_813 head-tail adaptor connector 1 7112 7516
YP_009018883.1 NC_023746_p7 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 5894 6463
YP_009018978.1 NC_023746_p102 hypothetical protein phrog_1693 unknown function unknown function 1 56087 56299
YP_009018966.1 NC_023746_p90 hypothetical protein phrog_2278 unknown function unknown function 1 51346 51582