| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023746 |
Definition |
Mycobacterium phage GUmbie, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
57387 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
104 |
%GC |
61.36 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009018977.1 | NC_023746_p101 | Ser/Thr kinase domain | phrog_3297 | kinase | other | 1 | 55573 | 56046 |
| YP_009018972.1 | NC_023746_p96 | AlpA | phrog_3813 | unknown function | unknown function | 1 | 53123 | 53314 |
| YP_009018945.1 | NC_023746_p69 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45769 | 46728 |
| YP_009018920.1 | NC_023746_p44 | HTH DNA binding | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 34354 | 34701 |
| YP_009018925.1 | NC_023746_p49 | hypothetical protein | phrog_12427 | unknown function | unknown function | 1 | 36494 | 36778 |
| YP_009018933.1 | NC_023746_p57 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39435 | 39716 |
| YP_009018937.1 | NC_023746_p61 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 40460 | 40801 |
| YP_009018882.1 | NC_023746_p6 | major capsid | phrog_267 | major head protein | head and packaging | 1 | 5064 | 5885 |
| YP_009018909.1 | NC_023746_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28784 | 29158 |
| YP_009018887.1 | NC_023746_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7625 | 8434 |
| YP_009018949.1 | NC_023746_p73 | hypothetical protein | phrog_5892 | unknown function | unknown function | 1 | 47367 | 47564 |
| YP_009018929.1 | NC_023746_p53 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 37837 | 38118 |
| YP_009018888.1 | NC_023746_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8572 | 9508 |
| YP_009018936.1 | NC_023746_p60 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40233 | 40463 |
| YP_009018906.1 | NC_023746_p30 | LysA | phrog_700 | endolysin | lysis | 1 | 26344 | 27537 |
| YP_009018900.1 | NC_023746_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24269 | 25093 |
| YP_009018980.1 | NC_023746_p104 | HNH endonuclease domain | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56919 | 57245 |
| YP_009018902.1 | NC_023746_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25445 | 25741 |
| YP_009018974.1 | NC_023746_p98 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53709 | 53951 |
| YP_009018950.1 | NC_023746_p74 | MPME2 | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 47610 | 47981 |
| YP_009018931.1 | NC_023746_p55 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 38453 | 38956 |
| YP_009018890.1 | NC_023746_p14 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9527 | 13012 |
| YP_009018951.1 | NC_023746_p75 | hypothetical protein | phrog_24183 | unknown function | unknown function | 1 | 47968 | 48375 |
| YP_009018970.1 | NC_023746_p94 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52798 | 52962 |
| YP_009018932.1 | NC_023746_p56 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 38953 | 39438 |
| YP_009018926.1 | NC_023746_p50 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36775 | 36963 |
| YP_009018911.1 | NC_023746_p35 | DnaQ-like | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29402 | 30223 |
| YP_009018976.1 | NC_023746_p100 | N-acetylgalactosaminyl transferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54132 | 55568 |
| YP_009018921.1 | NC_023746_p45 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 34760 | 35764 |
| YP_009018979.1 | NC_023746_p103 | N-acetylglucosaminyl transferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56296 | 56919 |
| YP_009018910.1 | NC_023746_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29155 | 29415 |
| YP_009018963.1 | NC_023746_p87 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 50971 | 51108 |
| YP_009018891.1 | NC_023746_p15 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 13013 | 14722 |
| YP_009018930.1 | NC_023746_p54 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38115 | 38462 |
| YP_009018962.1 | NC_023746_p86 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50787 | 50966 |
| YP_009018947.1 | NC_023746_p71 | hypothetical protein | phrog_7196 | unknown function | unknown function | 1 | 46988 | 47179 |
| YP_009018885.1 | NC_023746_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6796 | 7122 |
| YP_009018881.1 | NC_023746_p5 | scaffolding | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4452 | 5045 |
| YP_009018903.1 | NC_023746_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25748 | 25897 |
| YP_009018879.1 | NC_023746_p3 | portal | phrog_104 | portal protein | head and packaging | 1 | 2256 | 3626 |
| YP_009018895.1 | NC_023746_p19 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19936 | 21822 |
| YP_009018916.1 | NC_023746_p40 | HTH DNA binding | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 30989 | 31183 |
| YP_009018948.1 | NC_023746_p72 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47176 | 47370 |
| YP_009018922.1 | NC_023746_p46 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35761 | 35976 |
| YP_009018959.1 | NC_023746_p83 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 50124 | 50336 |
| YP_009018914.1 | NC_023746_p38 | PLA2-like domain | phrog_3693 | unknown function | unknown function | -1 | 30654 | 30797 |
| YP_009018975.1 | NC_023746_p99 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 53944 | 54105 |
| YP_009018943.1 | NC_023746_p67 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 44915 | 45214 |
| YP_009018904.1 | NC_023746_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25894 | 26034 |
| YP_009018935.1 | NC_023746_p59 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40078 | 40233 |
| YP_009018892.1 | NC_023746_p16 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 14805 | 16514 |
| YP_009018964.1 | NC_023746_p88 | hypothetical protein | phrog_12331 | unknown function | unknown function | 1 | 51105 | 51233 |
| YP_009018965.1 | NC_023746_p89 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 51230 | 51349 |
| YP_009018969.1 | NC_023746_p93 | MerR-like | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 52577 | 52801 |
| YP_009018913.1 | NC_023746_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30521 | 30616 |
| YP_009018919.1 | NC_023746_p43 | hypothetical protein | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 33709 | 34242 |
| YP_009018917.1 | NC_023746_p41 | integrase (Y-int) | phrog_1 | integrase | integration and excision | 1 | 31614 | 32912 |
| YP_009018915.1 | NC_023746_p39 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 30788 | 30937 |
| YP_009018960.1 | NC_023746_p84 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 50333 | 50527 |
| YP_009018898.1 | NC_023746_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23367 | 23621 |
| YP_009018894.1 | NC_023746_p18 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 17402 | 19939 |
| YP_009018938.1 | NC_023746_p62 | AAA ATPase | phrog_1366 | unknown function | unknown function | 1 | 40798 | 41679 |
| YP_009018877.1 | NC_023746_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 110 | 565 |
| YP_009018884.1 | NC_023746_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6460 | 6789 |
| YP_009018878.1 | NC_023746_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 588 | 2225 |
| YP_009018958.1 | NC_023746_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 49904 | 50071 |
| YP_009018923.1 | NC_023746_p47 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36062 | 36259 |
| YP_009018893.1 | NC_023746_p17 | minor tail subunit | phrog_732 | minor tail protein | tail | 1 | 16557 | 17405 |
| YP_009018927.1 | NC_023746_p51 | hypothetical protein | phrog_31242 | unknown function | unknown function | 1 | 36960 | 37460 |
| YP_009018968.1 | NC_023746_p92 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51823 | 52467 |
| YP_009018896.1 | NC_023746_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21819 | 22985 |
| YP_009018954.1 | NC_023746_p78 | hypothetical protein | phrog_19489 | unknown function | unknown function | 1 | 48699 | 48941 |
| YP_009018899.1 | NC_023746_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23634 | 24272 |
| YP_009018905.1 | NC_023746_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26096 | 26347 |
| YP_009018924.1 | NC_023746_p48 | hypothetical protein | phrog_13720 | unknown function | unknown function | 1 | 36303 | 36497 |
| YP_009018957.1 | NC_023746_p81 | hypothetical protein | phrog_14412 | unknown function | unknown function | 1 | 49407 | 49907 |
| YP_009018918.1 | NC_023746_p42 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 32991 | 33446 |
| YP_009018967.1 | NC_023746_p91 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 51575 | 51826 |
| YP_009018940.1 | NC_023746_p64 | DNA methylase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42035 | 44554 |
| YP_009018953.1 | NC_023746_p77 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 48541 | 48702 |
| YP_009018912.1 | NC_023746_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30241 | 30531 |
| YP_009018956.1 | NC_023746_p80 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 49078 | 49410 |
| YP_009018942.1 | NC_023746_p66 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 44769 | 44918 |
| YP_009018944.1 | NC_023746_p68 | GIY-YIG domain | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45215 | 45769 |
| YP_009018889.1 | NC_023746_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8572 | 9123 |
| YP_009018955.1 | NC_023746_p79 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 48938 | 49081 |
| YP_009018908.1 | NC_023746_p32 | holin | phrog_443 | holin | lysis | 1 | 28554 | 28787 |
| YP_009018901.1 | NC_023746_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25099 | 25296 |
| YP_009018973.1 | NC_023746_p97 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 53311 | 53712 |
| YP_009018971.1 | NC_023746_p95 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52968 | 53126 |
| YP_009018897.1 | NC_023746_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23003 | 23344 |
| YP_009018939.1 | NC_023746_p63 | HNH endonuclease domain | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41676 | 42038 |
| YP_009018907.1 | NC_023746_p31 | LysB | phrog_102 | endolysin | lysis | 1 | 27537 | 28538 |
| YP_009018941.1 | NC_023746_p65 | hypothetical protein | phrog_7443 | unknown function | unknown function | 1 | 44551 | 44772 |
| YP_009018880.1 | NC_023746_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3613 | 4368 |
| YP_009018928.1 | NC_023746_p52 | hypothetical protein | phrog_8015 | unknown function | unknown function | 1 | 37478 | 37759 |
| YP_009018934.1 | NC_023746_p58 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39713 | 40078 |
| YP_009018946.1 | NC_023746_p70 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46728 | 46991 |
| YP_009018952.1 | NC_023746_p76 | hypothetical protein | phrog_15751 | unknown function | unknown function | 1 | 48332 | 48544 |
| YP_009018961.1 | NC_023746_p85 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 50527 | 50790 |
| YP_009018886.1 | NC_023746_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7112 | 7516 |
| YP_009018883.1 | NC_023746_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5894 | 6463 |
| YP_009018978.1 | NC_023746_p102 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 56087 | 56299 |
| YP_009018966.1 | NC_023746_p90 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 51346 | 51582 |