Genomic map of Mycobacterium phage SkiPole (NC_023748)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023748
Definition
Mycobacterium phage SkiPole, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
53137
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
63.64
Number of singletons
5
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009019085.1 NC_023748_p10 hypothetical protein phrog_747 unknown function unknown function 1 4500 4757
YP_009019110.1 NC_023748_p35 hypothetical protein phrog_16290 minor tail protein tail 1 27330 27749
YP_009019174.1 NC_023748_p99 hypothetical protein phrog_11620 unknown function unknown function 1 51708 51848
YP_009019143.1 NC_023748_p68 hypothetical protein phrog_647 unknown function unknown function -1 41608 41922
YP_009019094.1 NC_023748_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13053 13502
YP_009019146.1 NC_023748_p71 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42717 43538
YP_009019137.1 NC_023748_p62 hypothetical protein phrog_11567 unknown function unknown function -1 40277 40453
YP_009019125.1 NC_023748_p50 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35736 36227
YP_009019103.1 NC_023748_p28 hypothetical protein phrog_1543 minor tail protein tail 1 21243 21425
YP_009019097.1 NC_023748_p22 hypothetical protein phrog_123 tail terminator connector 1 14263 14709
YP_009019127.1 NC_023748_p52 hypothetical protein phrog_3283 unknown function unknown function -1 36403 36621
YP_009019165.1 NC_023748_p90 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 49480 49647
YP_009019078.1 NC_023748_p3 hypothetical protein phrog_18329 unknown function unknown function 1 1163 1300
YP_009019111.1 NC_023748_p36 hypothetical protein phrog_644 unknown function unknown function 1 27842 28162
YP_009019077.1 NC_023748_p2 HNH phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 861 1166
YP_009019171.1 NC_023748_p96 hypothetical protein phrog_2212 unknown function unknown function -1 51032 51151
YP_009019089.1 NC_023748_p14 portal protein phrog_104 portal protein head and packaging 1 8832 10274
YP_009019122.1 NC_023748_p47 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33483 35312
YP_009019172.1 NC_023748_p97 hypothetical protein phrog_2985 unknown function unknown function 1 51267 51422
YP_009019134.1 NC_023748_p59 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39255 39713
YP_009019157.1 NC_023748_p82 hypothetical protein phrog_1584 unknown function unknown function -1 46400 46717
YP_009019158.1 NC_023748_p83 hypothetical protein phrog_1809 unknown function unknown function -1 46714 47109
YP_009019121.1 NC_023748_p46 hypothetical protein phrog_383 unknown function unknown function -1 33092 33481
YP_009019108.1 NC_023748_p33 hypothetical protein phrog_346 minor tail protein tail 1 24424 26277
YP_009019142.1 NC_023748_p67 hypothetical protein phrog_722 unknown function unknown function -1 41388 41615
YP_009019105.1 NC_023748_p30 hypothetical protein phrog_352 minor tail protein tail 1 23265 23711
YP_009019080.1 NC_023748_p5 hypothetical protein phrog_2830 unknown function unknown function 1 1957 2187
YP_009019081.1 NC_023748_p6 hypothetical protein phrog_1197 tail protein tail 1 2409 3506
YP_009019154.1 NC_023748_p79 hypothetical protein phrog_21484 unknown function unknown function -1 45634 45939
YP_009019150.1 NC_023748_p75 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44124 44306
YP_009019102.1 NC_023748_p27 hypothetical protein phrog_106 minor tail protein tail 1 19189 21246
YP_009019177.1 NC_023748_p102 hypothetical protein phrog_15488 unknown function unknown function -1 52470 53069
YP_009019079.1 NC_023748_p4 hypothetical protein phrog_226 minor tail protein tail 1 1351 1785
YP_009019119.1 NC_023748_p44 hypothetical protein phrog_6835 unknown function unknown function -1 32262 32618
YP_009019167.1 NC_023748_p92 hypothetical protein phrog_932 unknown function unknown function -1 49793 49945
YP_009019104.1 NC_023748_p29 hypothetical protein phrog_110 minor tail protein tail 1 21425 23227
YP_009019109.1 NC_023748_p34 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 26270 27307
YP_009019088.1 NC_023748_p13 Terminase phrog_9 terminase large subunit head and packaging 1 7147 8835
YP_009019100.1 NC_023748_p25 tail scaffold chaperone phrog_330 tail assembly chaperone tail 1 15639 16118
YP_009019126.1 NC_023748_p51 hypothetical protein phrog_14562 unknown function unknown function -1 36224 36403
YP_009019175.1 NC_023748_p100 hypothetical protein phrog_13961 unknown function unknown function -1 51892 52077
YP_009019163.1 NC_023748_p88 hypothetical protein phrog_1387 unknown function unknown function -1 49104 49295
YP_009019106.1 NC_023748_p31 hypothetical protein phrog_981 minor tail protein tail 1 23708 24055
YP_009019139.1 NC_023748_p64 Endo VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40613 41080
YP_009019120.1 NC_023748_p45 hypothetical protein phrog_1971 unknown function unknown function -1 32808 33095
YP_009019129.1 NC_023748_p54 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36799 37590
YP_009019160.1 NC_023748_p85 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47925 48224
YP_009019166.1 NC_023748_p91 hypothetical protein phrog_2093 unknown function unknown function -1 49644 49772
YP_009019124.1 NC_023748_p49 hypothetical protein phrog_1781 unknown function unknown function -1 35475 35705
YP_009019147.1 NC_023748_p72 hypothetical protein phrog_2507 unknown function unknown function -1 43538 43711
YP_009019144.1 NC_023748_p69 hypothetical protein phrog_1573 DNA methyltransferase other -1 42029 42424
YP_009019086.1 NC_023748_p11 LysA phrog_317 endolysin lysis 1 4757 6169
YP_009019132.1 NC_023748_p57 hypothetical protein phrog_1503 unknown function unknown function -1 38492 38671
YP_009019170.1 NC_023748_p95 hypothetical protein phrog_5533 unknown function unknown function -1 50817 51002
YP_009019168.1 NC_023748_p93 hypothetical protein singleton unknown function unknown function -1 50015 50221
YP_009019092.1 NC_023748_p17 capsid phrog_10 major head protein head and packaging 1 11733 12731
YP_009019098.1 NC_023748_p23 major tail subunit phrog_117 major tail protein tail 1 14718 15566
YP_009019107.1 NC_023748_p32 hypothetical protein phrog_1397 unknown function unknown function 1 24052 24399
YP_009019135.1 NC_023748_p60 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39622 40137
YP_009019169.1 NC_023748_p94 hypothetical protein phrog_5017 unknown function unknown function -1 50470 50817
YP_009019138.1 NC_023748_p63 hypothetical protein phrog_397 unknown function unknown function -1 40450 40593
YP_009019099.1 NC_023748_p24 tail scaffold chaperone phrog_393 tail assembly chaperone tail 1 15639 16540
YP_009019083.1 NC_023748_p8 hypothetical protein singleton unknown function unknown function 1 3997 4218
YP_009019082.1 NC_023748_p7 hypothetical protein singleton unknown function unknown function 1 3516 3974
YP_009019093.1 NC_023748_p18 hypothetical protein phrog_1857 head-tail connector protein connector 1 12817 13053
YP_009019161.1 NC_023748_p86 hypothetical protein phrog_1720 unknown function unknown function -1 48221 48493
YP_009019117.1 NC_023748_p42 hypothetical protein phrog_6549 unknown function unknown function -1 31901 32086
YP_009019152.1 NC_023748_p77 hypothetical protein singleton unknown function unknown function -1 45133 45297
YP_009019123.1 NC_023748_p48 hypothetical protein phrog_542 unknown function unknown function -1 35353 35478
YP_009019130.1 NC_023748_p55 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 37583 37723
YP_009019118.1 NC_023748_p43 hypothetical protein phrog_2035 unknown function unknown function -1 32086 32265
YP_009019156.1 NC_023748_p81 hypothetical protein phrog_20207 unknown function unknown function -1 46189 46332
YP_009019159.1 NC_023748_p84 repressor phrog_357 transcriptional repressor transcription regulation -1 47151 47837
YP_009019128.1 NC_023748_p53 hypothetical protein phrog_499 unknown function unknown function -1 36641 36802
YP_009019164.1 NC_023748_p89 hypothetical protein phrog_1155 unknown function unknown function -1 49292 49480
YP_009019136.1 NC_023748_p61 hypothetical protein phrog_1783 unknown function unknown function -1 40116 40277
YP_009019084.1 NC_023748_p9 hypothetical protein phrog_1718 tail protein tail 1 4232 4492
YP_009019148.1 NC_023748_p73 hypothetical protein phrog_1705 unknown function unknown function -1 43708 43830
YP_009019131.1 NC_023748_p56 RDF phrog_221 metallo-phosphoesterase other -1 37728 38495
YP_009019087.1 NC_023748_p12 LysB phrog_102 endolysin lysis 1 6159 7127
YP_009019151.1 NC_023748_p76 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44333 45136
YP_009019141.1 NC_023748_p66 hypothetical protein phrog_647 unknown function unknown function -1 41150 41398
YP_009019114.1 NC_023748_p39 hypothetical protein phrog_411 unknown function unknown function 1 29440 29724
YP_009019101.1 NC_023748_p26 tapemeasure protein phrog_305 tail length tape measure protein tail 1 16553 19165
YP_009019095.1 NC_023748_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 13502 13864
YP_009019090.1 NC_023748_p15 protease phrog_193 head maturation protease head and packaging 1 10271 11152
YP_009019140.1 NC_023748_p65 hypothetical protein phrog_1019 unknown function unknown function -1 41067 41165
YP_009019116.1 NC_023748_p41 hypothetical protein phrog_12181 unknown function unknown function -1 31518 31904
YP_009019112.1 NC_023748_p37 hypothetical protein phrog_1560 unknown function unknown function 1 28172 28363
YP_009019176.1 NC_023748_p101 hypothetical protein phrog_3574 unknown function unknown function 1 52158 52346
YP_009019115.1 NC_023748_p40 integrase phrog_95 integrase integration and excision 1 29928 31442
YP_009019155.1 NC_023748_p80 hypothetical protein phrog_21752 unknown function unknown function -1 45932 46192
YP_009019133.1 NC_023748_p58 hypothetical protein phrog_1167 phosphofructokinase other -1 38668 39258
YP_009019149.1 NC_023748_p74 hypothetical protein phrog_520 unknown function unknown function -1 43827 44120
YP_009019096.1 NC_023748_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13864 14259
YP_009019162.1 NC_023748_p87 hypothetical protein phrog_34690 unknown function unknown function -1 48490 49101
YP_009019113.1 NC_023748_p38 hypothetical protein phrog_754 minor tail protein tail 1 28360 29319
YP_009019173.1 NC_023748_p98 hypothetical protein phrog_828 unknown function unknown function 1 51505 51711
YP_009019145.1 NC_023748_p70 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42421 42720
YP_009019076.1 NC_023748_p1 hypothetical protein phrog_21074 helicase DNA, RNA and nucleotide metabolism 1 610 864
YP_009019091.1 NC_023748_p16 scaffold phrog_233 head scaffolding protein head and packaging 1 11211 11723
YP_009019153.1 NC_023748_p78 hypothetical protein singleton unknown function unknown function -1 45291 45644