| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023748 |
Definition |
Mycobacterium phage SkiPole, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53137 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
63.64 |
Number of singletons |
5 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009019085.1 | NC_023748_p10 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4500 | 4757 |
| YP_009019110.1 | NC_023748_p35 | hypothetical protein | phrog_16290 | minor tail protein | tail | 1 | 27330 | 27749 |
| YP_009019174.1 | NC_023748_p99 | hypothetical protein | phrog_11620 | unknown function | unknown function | 1 | 51708 | 51848 |
| YP_009019143.1 | NC_023748_p68 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 41608 | 41922 |
| YP_009019094.1 | NC_023748_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13053 | 13502 |
| YP_009019146.1 | NC_023748_p71 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42717 | 43538 |
| YP_009019137.1 | NC_023748_p62 | hypothetical protein | phrog_11567 | unknown function | unknown function | -1 | 40277 | 40453 |
| YP_009019125.1 | NC_023748_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35736 | 36227 |
| YP_009019103.1 | NC_023748_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21243 | 21425 |
| YP_009019097.1 | NC_023748_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14263 | 14709 |
| YP_009019127.1 | NC_023748_p52 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 36403 | 36621 |
| YP_009019165.1 | NC_023748_p90 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49480 | 49647 |
| YP_009019078.1 | NC_023748_p3 | hypothetical protein | phrog_18329 | unknown function | unknown function | 1 | 1163 | 1300 |
| YP_009019111.1 | NC_023748_p36 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27842 | 28162 |
| YP_009019077.1 | NC_023748_p2 | HNH | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 861 | 1166 |
| YP_009019171.1 | NC_023748_p96 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51032 | 51151 |
| YP_009019089.1 | NC_023748_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8832 | 10274 |
| YP_009019122.1 | NC_023748_p47 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33483 | 35312 |
| YP_009019172.1 | NC_023748_p97 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 51267 | 51422 |
| YP_009019134.1 | NC_023748_p59 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39255 | 39713 |
| YP_009019157.1 | NC_023748_p82 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 46400 | 46717 |
| YP_009019158.1 | NC_023748_p83 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46714 | 47109 |
| YP_009019121.1 | NC_023748_p46 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33092 | 33481 |
| YP_009019108.1 | NC_023748_p33 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 24424 | 26277 |
| YP_009019142.1 | NC_023748_p67 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 41388 | 41615 |
| YP_009019105.1 | NC_023748_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23265 | 23711 |
| YP_009019080.1 | NC_023748_p5 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1957 | 2187 |
| YP_009019081.1 | NC_023748_p6 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2409 | 3506 |
| YP_009019154.1 | NC_023748_p79 | hypothetical protein | phrog_21484 | unknown function | unknown function | -1 | 45634 | 45939 |
| YP_009019150.1 | NC_023748_p75 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44124 | 44306 |
| YP_009019102.1 | NC_023748_p27 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 19189 | 21246 |
| YP_009019177.1 | NC_023748_p102 | hypothetical protein | phrog_15488 | unknown function | unknown function | -1 | 52470 | 53069 |
| YP_009019079.1 | NC_023748_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1351 | 1785 |
| YP_009019119.1 | NC_023748_p44 | hypothetical protein | phrog_6835 | unknown function | unknown function | -1 | 32262 | 32618 |
| YP_009019167.1 | NC_023748_p92 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 49793 | 49945 |
| YP_009019104.1 | NC_023748_p29 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 21425 | 23227 |
| YP_009019109.1 | NC_023748_p34 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26270 | 27307 |
| YP_009019088.1 | NC_023748_p13 | Terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7147 | 8835 |
| YP_009019100.1 | NC_023748_p25 | tail scaffold chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15639 | 16118 |
| YP_009019126.1 | NC_023748_p51 | hypothetical protein | phrog_14562 | unknown function | unknown function | -1 | 36224 | 36403 |
| YP_009019175.1 | NC_023748_p100 | hypothetical protein | phrog_13961 | unknown function | unknown function | -1 | 51892 | 52077 |
| YP_009019163.1 | NC_023748_p88 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49104 | 49295 |
| YP_009019106.1 | NC_023748_p31 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23708 | 24055 |
| YP_009019139.1 | NC_023748_p64 | Endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40613 | 41080 |
| YP_009019120.1 | NC_023748_p45 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32808 | 33095 |
| YP_009019129.1 | NC_023748_p54 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36799 | 37590 |
| YP_009019160.1 | NC_023748_p85 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47925 | 48224 |
| YP_009019166.1 | NC_023748_p91 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49644 | 49772 |
| YP_009019124.1 | NC_023748_p49 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35475 | 35705 |
| YP_009019147.1 | NC_023748_p72 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 43538 | 43711 |
| YP_009019144.1 | NC_023748_p69 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 42029 | 42424 |
| YP_009019086.1 | NC_023748_p11 | LysA | phrog_317 | endolysin | lysis | 1 | 4757 | 6169 |
| YP_009019132.1 | NC_023748_p57 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38492 | 38671 |
| YP_009019170.1 | NC_023748_p95 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 50817 | 51002 |
| YP_009019168.1 | NC_023748_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50015 | 50221 |
| YP_009019092.1 | NC_023748_p17 | capsid | phrog_10 | major head protein | head and packaging | 1 | 11733 | 12731 |
| YP_009019098.1 | NC_023748_p23 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14718 | 15566 |
| YP_009019107.1 | NC_023748_p32 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24052 | 24399 |
| YP_009019135.1 | NC_023748_p60 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39622 | 40137 |
| YP_009019169.1 | NC_023748_p94 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 50470 | 50817 |
| YP_009019138.1 | NC_023748_p63 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40450 | 40593 |
| YP_009019099.1 | NC_023748_p24 | tail scaffold chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15639 | 16540 |
| YP_009019083.1 | NC_023748_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3997 | 4218 |
| YP_009019082.1 | NC_023748_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3516 | 3974 |
| YP_009019093.1 | NC_023748_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12817 | 13053 |
| YP_009019161.1 | NC_023748_p86 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 48221 | 48493 |
| YP_009019117.1 | NC_023748_p42 | hypothetical protein | phrog_6549 | unknown function | unknown function | -1 | 31901 | 32086 |
| YP_009019152.1 | NC_023748_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45133 | 45297 |
| YP_009019123.1 | NC_023748_p48 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 35353 | 35478 |
| YP_009019130.1 | NC_023748_p55 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37583 | 37723 |
| YP_009019118.1 | NC_023748_p43 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32086 | 32265 |
| YP_009019156.1 | NC_023748_p81 | hypothetical protein | phrog_20207 | unknown function | unknown function | -1 | 46189 | 46332 |
| YP_009019159.1 | NC_023748_p84 | repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47151 | 47837 |
| YP_009019128.1 | NC_023748_p53 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36641 | 36802 |
| YP_009019164.1 | NC_023748_p89 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49292 | 49480 |
| YP_009019136.1 | NC_023748_p61 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40116 | 40277 |
| YP_009019084.1 | NC_023748_p9 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4232 | 4492 |
| YP_009019148.1 | NC_023748_p73 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43708 | 43830 |
| YP_009019131.1 | NC_023748_p56 | RDF | phrog_221 | metallo-phosphoesterase | other | -1 | 37728 | 38495 |
| YP_009019087.1 | NC_023748_p12 | LysB | phrog_102 | endolysin | lysis | 1 | 6159 | 7127 |
| YP_009019151.1 | NC_023748_p76 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44333 | 45136 |
| YP_009019141.1 | NC_023748_p66 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 41150 | 41398 |
| YP_009019114.1 | NC_023748_p39 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29440 | 29724 |
| YP_009019101.1 | NC_023748_p26 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16553 | 19165 |
| YP_009019095.1 | NC_023748_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13502 | 13864 |
| YP_009019090.1 | NC_023748_p15 | protease | phrog_193 | head maturation protease | head and packaging | 1 | 10271 | 11152 |
| YP_009019140.1 | NC_023748_p65 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41067 | 41165 |
| YP_009019116.1 | NC_023748_p41 | hypothetical protein | phrog_12181 | unknown function | unknown function | -1 | 31518 | 31904 |
| YP_009019112.1 | NC_023748_p37 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28172 | 28363 |
| YP_009019176.1 | NC_023748_p101 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 52158 | 52346 |
| YP_009019115.1 | NC_023748_p40 | integrase | phrog_95 | integrase | integration and excision | 1 | 29928 | 31442 |
| YP_009019155.1 | NC_023748_p80 | hypothetical protein | phrog_21752 | unknown function | unknown function | -1 | 45932 | 46192 |
| YP_009019133.1 | NC_023748_p58 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38668 | 39258 |
| YP_009019149.1 | NC_023748_p74 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43827 | 44120 |
| YP_009019096.1 | NC_023748_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13864 | 14259 |
| YP_009019162.1 | NC_023748_p87 | hypothetical protein | phrog_34690 | unknown function | unknown function | -1 | 48490 | 49101 |
| YP_009019113.1 | NC_023748_p38 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28360 | 29319 |
| YP_009019173.1 | NC_023748_p98 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 51505 | 51711 |
| YP_009019145.1 | NC_023748_p70 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42421 | 42720 |
| YP_009019076.1 | NC_023748_p1 | hypothetical protein | phrog_21074 | helicase | DNA, RNA and nucleotide metabolism | 1 | 610 | 864 |
| YP_009019091.1 | NC_023748_p16 | scaffold | phrog_233 | head scaffolding protein | head and packaging | 1 | 11211 | 11723 |
| YP_009019153.1 | NC_023748_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45291 | 45644 |