| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_023862 |
Definition |
Mycobacterium phage Alsfro, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52136 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
98 |
%GC |
63.57 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009021600.1 | NC_023862_p32 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23705 | 24151 |
| YP_009021654.1 | NC_023862_p86 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47865 | 48053 |
| YP_009021571.1 | NC_023862_p3 | hypothetical protein | phrog_18329 | unknown function | unknown function | 1 | 1080 | 1217 |
| YP_009021614.1 | NC_023862_p46 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32444 | 32728 |
| YP_009021660.1 | NC_023862_p92 | hypothetical protein | phrog_26173 | unknown function | unknown function | -1 | 49158 | 49418 |
| YP_009021592.1 | NC_023862_p24 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14900 | 15346 |
| YP_009021597.1 | NC_023862_p29 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19629 | 21686 |
| YP_009021628.1 | NC_023862_p60 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39183 | 39698 |
| YP_009021641.1 | NC_023862_p73 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43169 | 43351 |
| YP_009021623.1 | NC_023862_p55 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36960 | 37727 |
| YP_009021633.1 | NC_023862_p65 | hypothetical protein | phrog_20643 | unknown function | unknown function | -1 | 40585 | 40920 |
| YP_009021586.1 | NC_023862_p18 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11858 | 12370 |
| YP_009021631.1 | NC_023862_p63 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39909 | 40052 |
| YP_009021604.1 | NC_023862_p36 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26710 | 28188 |
| YP_009021617.1 | NC_023862_p49 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 34978 | 35106 |
| YP_009021596.1 | NC_023862_p28 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 17131 | 19605 |
| YP_009021666.1 | NC_023862_p98 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 50848 | 51114 |
| YP_009021580.1 | NC_023862_p12 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 5088 | 5345 |
| YP_009021630.1 | NC_023862_p62 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 39841 | 39912 |
| YP_009021635.1 | NC_023862_p67 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 41089 | 41490 |
| YP_009021579.1 | NC_023862_p11 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4820 | 5080 |
| YP_009021588.1 | NC_023862_p20 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13466 | 13690 |
| YP_009021615.1 | NC_023862_p47 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32725 | 33090 |
| YP_009021619.1 | NC_023862_p51 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35364 | 35855 |
| YP_009021656.1 | NC_023862_p88 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48217 | 48345 |
| YP_009021665.1 | NC_023862_p97 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 50466 | 50621 |
| YP_009021612.1 | NC_023862_p44 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32185 | 32364 |
| YP_009021606.1 | NC_023862_p38 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28611 | 28802 |
| YP_009021647.1 | NC_023862_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45371 | 45502 |
| YP_009021651.1 | NC_023862_p83 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47103 | 47402 |
| YP_009021621.1 | NC_023862_p53 | phosphoesterase | phrog_354 | sigma-K factor | transcription regulation | -1 | 36031 | 36822 |
| YP_009021632.1 | NC_023862_p64 | Endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40075 | 40578 |
| YP_009021607.1 | NC_023862_p39 | hypothetical protein | phrog_12500 | minor tail protein | tail | 1 | 28799 | 29311 |
| YP_009021625.1 | NC_023862_p57 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37891 | 38448 |
| YP_009021657.1 | NC_023862_p89 | hypothetical protein | phrog_17075 | unknown function | unknown function | -1 | 48342 | 48488 |
| YP_009021613.1 | NC_023862_p45 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32352 | 32447 |
| YP_009021602.1 | NC_023862_p34 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 24492 | 24839 |
| YP_009021610.1 | NC_023862_p42 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31518 | 31790 |
| YP_009021639.1 | NC_023862_p71 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42753 | 42875 |
| YP_009021643.1 | NC_023862_p75 | hypothetical protein | phrog_13492 | unknown function | unknown function | -1 | 44187 | 44438 |
| YP_009021581.1 | NC_023862_p13 | lysin A | phrog_317 | endolysin | lysis | 1 | 5368 | 6816 |
| YP_009021627.1 | NC_023862_p59 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38813 | 39337 |
| YP_009021594.1 | NC_023862_p26 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16319 | 16696 |
| YP_009021650.1 | NC_023862_p82 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46329 | 47015 |
| YP_009021634.1 | NC_023862_p66 | hypothetical protein | phrog_2740 | unknown function | unknown function | -1 | 40917 | 41096 |
| YP_009021637.1 | NC_023862_p69 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41762 | 42583 |
| YP_009021574.1 | NC_023862_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2034 | 2225 |
| YP_009021646.1 | NC_023862_p78 | hypothetical protein | phrog_11473 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44899 | 45381 |
| YP_009021598.1 | NC_023862_p30 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21683 | 21865 |
| YP_009021595.1 | NC_023862_p27 | tail assembly chaperone | singleton | unknown function | unknown function | 1 | 16894 | 17118 |
| YP_009021587.1 | NC_023862_p19 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12380 | 13387 |
| YP_009021653.1 | NC_023862_p85 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47665 | 47868 |
| YP_009021589.1 | NC_023862_p21 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13690 | 14139 |
| YP_009021582.1 | NC_023862_p14 | lysin B | phrog_102 | endolysin | lysis | 1 | 6806 | 7774 |
| YP_009021577.1 | NC_023862_p9 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 3036 | 4106 |
| YP_009021609.1 | NC_023862_p41 | integrase | phrog_95 | integrase | integration and excision | 1 | 29931 | 31442 |
| YP_009021585.1 | NC_023862_p17 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10918 | 11799 |
| YP_009021591.1 | NC_023862_p23 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14501 | 14896 |
| YP_009021572.1 | NC_023862_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1268 | 1702 |
| YP_009021570.1 | NC_023862_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 778 | 1083 |
| YP_009021608.1 | NC_023862_p40 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29435 | 29731 |
| YP_009021626.1 | NC_023862_p58 | hypothetical protein | phrog_4195 | unknown function | unknown function | -1 | 38445 | 38822 |
| YP_009021652.1 | NC_023862_p84 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47399 | 47668 |
| YP_009021655.1 | NC_023862_p87 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48053 | 48220 |
| YP_009021616.1 | NC_023862_p48 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33111 | 34937 |
| YP_009021618.1 | NC_023862_p50 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35103 | 35333 |
| YP_009021590.1 | NC_023862_p22 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14139 | 14501 |
| YP_009021661.1 | NC_023862_p93 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 49455 | 49532 |
| YP_009021569.1 | NC_023862_p1 | hypothetical protein | phrog_20581 | unknown function | unknown function | 1 | 542 | 781 |
| YP_009021576.1 | NC_023862_p8 | hypothetical protein | phrog_25307 | unknown function | unknown function | 1 | 2767 | 3003 |
| YP_009021611.1 | NC_023862_p43 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31787 | 32185 |
| YP_009021583.1 | NC_023862_p15 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7794 | 9482 |
| YP_009021629.1 | NC_023862_p61 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39677 | 39841 |
| YP_009021664.1 | NC_023862_p96 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50161 | 50241 |
| YP_009021584.1 | NC_023862_p16 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9479 | 10921 |
| YP_009021662.1 | NC_023862_p94 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 49646 | 49846 |
| YP_009021620.1 | NC_023862_p52 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35852 | 36034 |
| YP_009021642.1 | NC_023862_p74 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43378 | 44187 |
| YP_009021599.1 | NC_023862_p31 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21865 | 23667 |
| YP_009021659.1 | NC_023862_p91 | hypothetical protein | phrog_17848 | unknown function | unknown function | -1 | 48654 | 48824 |
| YP_009021605.1 | NC_023862_p37 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28281 | 28601 |
| YP_009021622.1 | NC_023862_p54 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36815 | 36955 |
| YP_009021636.1 | NC_023862_p68 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41487 | 41762 |
| YP_009021644.1 | NC_023862_p76 | hypothetical protein | phrog_12594 | unknown function | unknown function | -1 | 44435 | 44602 |
| YP_009021573.1 | NC_023862_p5 | hypothetical protein | phrog_26979 | unknown function | unknown function | 1 | 1839 | 2021 |
| YP_009021640.1 | NC_023862_p72 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42872 | 43165 |
| YP_009021649.1 | NC_023862_p81 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45892 | 46287 |
| YP_009021593.1 | NC_023862_p25 | major tail asubunit | phrog_117 | major tail protein | tail | 1 | 15355 | 16206 |
| YP_009021575.1 | NC_023862_p7 | hypothetical protein | phrog_3593 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2250 | 2729 |
| YP_009021578.1 | NC_023862_p10 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 4116 | 4820 |
| YP_009021645.1 | NC_023862_p77 | hypothetical protein | phrog_12774 | unknown function | unknown function | -1 | 44614 | 44886 |
| YP_009021603.1 | NC_023862_p35 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24864 | 26717 |
| YP_009021624.1 | NC_023862_p56 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37724 | 37894 |
| YP_009021601.1 | NC_023862_p33 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 24148 | 24495 |
| YP_009021663.1 | NC_023862_p95 | hypothetical protein | phrog_29761 | unknown function | unknown function | 1 | 49918 | 50079 |
| YP_009021648.1 | NC_023862_p80 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45581 | 45895 |
| YP_009021638.1 | NC_023862_p70 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 42583 | 42756 |
| YP_009021658.1 | NC_023862_p90 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48508 | 48657 |