Genomic map of Mycobacterium phage Alsfro (NC_023862)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023862
Definition
Mycobacterium phage Alsfro, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52136
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
98
%GC
63.57
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009021600.1 NC_023862_p32 minor tail protein phrog_352 minor tail protein tail 1 23705 24151
YP_009021654.1 NC_023862_p86 hypothetical protein phrog_1155 unknown function unknown function -1 47865 48053
YP_009021571.1 NC_023862_p3 hypothetical protein phrog_18329 unknown function unknown function 1 1080 1217
YP_009021614.1 NC_023862_p46 hypothetical protein phrog_1971 unknown function unknown function -1 32444 32728
YP_009021660.1 NC_023862_p92 hypothetical protein phrog_26173 unknown function unknown function -1 49158 49418
YP_009021592.1 NC_023862_p24 hypothetical protein phrog_123 tail terminator connector 1 14900 15346
YP_009021597.1 NC_023862_p29 minor tail protein phrog_106 minor tail protein tail 1 19629 21686
YP_009021628.1 NC_023862_p60 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39183 39698
YP_009021641.1 NC_023862_p73 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 43169 43351
YP_009021623.1 NC_023862_p55 hypothetical protein phrog_221 metallo-phosphoesterase other -1 36960 37727
YP_009021633.1 NC_023862_p65 hypothetical protein phrog_20643 unknown function unknown function -1 40585 40920
YP_009021586.1 NC_023862_p18 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11858 12370
YP_009021631.1 NC_023862_p63 hypothetical protein phrog_397 unknown function unknown function -1 39909 40052
YP_009021604.1 NC_023862_p36 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 26710 28188
YP_009021617.1 NC_023862_p49 hypothetical protein phrog_542 unknown function unknown function -1 34978 35106
YP_009021596.1 NC_023862_p28 tapemeasure phrog_305 tail length tape measure protein tail 1 17131 19605
YP_009021666.1 NC_023862_p98 hypothetical protein phrog_3574 unknown function unknown function 1 50848 51114
YP_009021580.1 NC_023862_p12 hypothetical protein phrog_747 unknown function unknown function 1 5088 5345
YP_009021630.1 NC_023862_p62 hypothetical protein phrog_5801 unknown function unknown function -1 39841 39912
YP_009021635.1 NC_023862_p67 hypothetical protein phrog_1573 DNA methyltransferase other -1 41089 41490
YP_009021579.1 NC_023862_p11 hypothetical protein phrog_1718 tail protein tail 1 4820 5080
YP_009021588.1 NC_023862_p20 hypothetical protein phrog_1857 head-tail connector protein connector 1 13466 13690
YP_009021615.1 NC_023862_p47 hypothetical protein phrog_383 unknown function unknown function -1 32725 33090
YP_009021619.1 NC_023862_p51 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35364 35855
YP_009021656.1 NC_023862_p88 hypothetical protein phrog_2093 unknown function unknown function -1 48217 48345
YP_009021665.1 NC_023862_p97 hypothetical protein phrog_2985 unknown function unknown function 1 50466 50621
YP_009021612.1 NC_023862_p44 hypothetical protein phrog_2035 unknown function unknown function -1 32185 32364
YP_009021606.1 NC_023862_p38 hypothetical protein phrog_1560 unknown function unknown function 1 28611 28802
YP_009021647.1 NC_023862_p79 hypothetical protein singleton unknown function unknown function -1 45371 45502
YP_009021651.1 NC_023862_p83 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47103 47402
YP_009021621.1 NC_023862_p53 phosphoesterase phrog_354 sigma-K factor transcription regulation -1 36031 36822
YP_009021632.1 NC_023862_p64 Endo VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40075 40578
YP_009021607.1 NC_023862_p39 hypothetical protein phrog_12500 minor tail protein tail 1 28799 29311
YP_009021625.1 NC_023862_p57 hypothetical protein phrog_1167 phosphofructokinase other -1 37891 38448
YP_009021657.1 NC_023862_p89 hypothetical protein phrog_17075 unknown function unknown function -1 48342 48488
YP_009021613.1 NC_023862_p45 hypothetical protein phrog_1860 unknown function unknown function -1 32352 32447
YP_009021602.1 NC_023862_p34 minor tail protein phrog_1397 unknown function unknown function 1 24492 24839
YP_009021610.1 NC_023862_p42 hypothetical protein phrog_1966 unknown function unknown function -1 31518 31790
YP_009021639.1 NC_023862_p71 hypothetical protein phrog_1705 unknown function unknown function -1 42753 42875
YP_009021643.1 NC_023862_p75 hypothetical protein phrog_13492 unknown function unknown function -1 44187 44438
YP_009021581.1 NC_023862_p13 lysin A phrog_317 endolysin lysis 1 5368 6816
YP_009021627.1 NC_023862_p59 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38813 39337
YP_009021594.1 NC_023862_p26 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16319 16696
YP_009021650.1 NC_023862_p82 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46329 47015
YP_009021634.1 NC_023862_p66 hypothetical protein phrog_2740 unknown function unknown function -1 40917 41096
YP_009021637.1 NC_023862_p69 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41762 42583
YP_009021574.1 NC_023862_p6 hypothetical protein singleton unknown function unknown function 1 2034 2225
YP_009021646.1 NC_023862_p78 hypothetical protein phrog_11473 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44899 45381
YP_009021598.1 NC_023862_p30 minor tail protein phrog_1543 minor tail protein tail 1 21683 21865
YP_009021595.1 NC_023862_p27 tail assembly chaperone singleton unknown function unknown function 1 16894 17118
YP_009021587.1 NC_023862_p19 major capsid protein phrog_10 major head protein head and packaging 1 12380 13387
YP_009021653.1 NC_023862_p85 hypothetical protein phrog_1387 unknown function unknown function -1 47665 47868
YP_009021589.1 NC_023862_p21 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13690 14139
YP_009021582.1 NC_023862_p14 lysin B phrog_102 endolysin lysis 1 6806 7774
YP_009021577.1 NC_023862_p9 hypothetical protein phrog_1197 tail protein tail 1 3036 4106
YP_009021609.1 NC_023862_p41 integrase phrog_95 integrase integration and excision 1 29931 31442
YP_009021585.1 NC_023862_p17 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10918 11799
YP_009021591.1 NC_023862_p23 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14501 14896
YP_009021572.1 NC_023862_p4 hypothetical protein phrog_226 minor tail protein tail 1 1268 1702
YP_009021570.1 NC_023862_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 778 1083
YP_009021608.1 NC_023862_p40 hypothetical protein phrog_411 unknown function unknown function 1 29435 29731
YP_009021626.1 NC_023862_p58 hypothetical protein phrog_4195 unknown function unknown function -1 38445 38822
YP_009021652.1 NC_023862_p84 hypothetical protein phrog_1720 unknown function unknown function -1 47399 47668
YP_009021655.1 NC_023862_p87 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48053 48220
YP_009021616.1 NC_023862_p48 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33111 34937
YP_009021618.1 NC_023862_p50 hypothetical protein phrog_1781 unknown function unknown function -1 35103 35333
YP_009021590.1 NC_023862_p22 hypothetical protein phrog_320 head closure Hc1 connector 1 14139 14501
YP_009021661.1 NC_023862_p93 hypothetical protein phrog_2212 unknown function unknown function -1 49455 49532
YP_009021569.1 NC_023862_p1 hypothetical protein phrog_20581 unknown function unknown function 1 542 781
YP_009021576.1 NC_023862_p8 hypothetical protein phrog_25307 unknown function unknown function 1 2767 3003
YP_009021611.1 NC_023862_p43 hypothetical protein phrog_2387 nucleotide kinase other -1 31787 32185
YP_009021583.1 NC_023862_p15 terminase phrog_9 terminase large subunit head and packaging 1 7794 9482
YP_009021629.1 NC_023862_p61 hypothetical protein phrog_1783 unknown function unknown function -1 39677 39841
YP_009021664.1 NC_023862_p96 hypothetical protein singleton unknown function unknown function 1 50161 50241
YP_009021584.1 NC_023862_p16 portal protein phrog_104 portal protein head and packaging 1 9479 10921
YP_009021662.1 NC_023862_p94 hypothetical protein phrog_828 unknown function unknown function 1 49646 49846
YP_009021620.1 NC_023862_p52 hypothetical protein phrog_499 unknown function unknown function -1 35852 36034
YP_009021642.1 NC_023862_p74 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43378 44187
YP_009021599.1 NC_023862_p31 minor tail protein phrog_110 minor tail protein tail 1 21865 23667
YP_009021659.1 NC_023862_p91 hypothetical protein phrog_17848 unknown function unknown function -1 48654 48824
YP_009021605.1 NC_023862_p37 hypothetical protein phrog_644 unknown function unknown function 1 28281 28601
YP_009021622.1 NC_023862_p54 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36815 36955
YP_009021636.1 NC_023862_p68 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 41487 41762
YP_009021644.1 NC_023862_p76 hypothetical protein phrog_12594 unknown function unknown function -1 44435 44602
YP_009021573.1 NC_023862_p5 hypothetical protein phrog_26979 unknown function unknown function 1 1839 2021
YP_009021640.1 NC_023862_p72 hypothetical protein phrog_520 unknown function unknown function -1 42872 43165
YP_009021649.1 NC_023862_p81 hypothetical protein phrog_1809 unknown function unknown function -1 45892 46287
YP_009021593.1 NC_023862_p25 major tail asubunit phrog_117 major tail protein tail 1 15355 16206
YP_009021575.1 NC_023862_p7 hypothetical protein phrog_3593 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2250 2729
YP_009021578.1 NC_023862_p10 hypothetical protein phrog_553 minor tail protein tail 1 4116 4820
YP_009021645.1 NC_023862_p77 hypothetical protein phrog_12774 unknown function unknown function -1 44614 44886
YP_009021603.1 NC_023862_p35 minor tail protein phrog_346 minor tail protein tail 1 24864 26717
YP_009021624.1 NC_023862_p56 hypothetical protein phrog_1503 unknown function unknown function -1 37724 37894
YP_009021601.1 NC_023862_p33 minor tail protein phrog_981 minor tail protein tail 1 24148 24495
YP_009021663.1 NC_023862_p95 hypothetical protein phrog_29761 unknown function unknown function 1 49918 50079
YP_009021648.1 NC_023862_p80 hypothetical protein phrog_1584 unknown function unknown function -1 45581 45895
YP_009021638.1 NC_023862_p70 hypothetical protein phrog_2507 unknown function unknown function -1 42583 42756
YP_009021658.1 NC_023862_p90 hypothetical protein phrog_932 unknown function unknown function -1 48508 48657