Genomic map of Vibrio phage CHOED (NC_023863)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_023863
Definition
Vibrio phage CHOED, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
66316
Host Name
Vibrio anguillarum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
91
%GC
43.67
Number of singletons
61
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009021681.1 NC_023863_p15 hypothetical protein singleton unknown function unknown function 1 14025 14546
YP_009021736.1 NC_023863_p70 hypothetical protein singleton unknown function unknown function -1 44000 44218
YP_009021749.1 NC_023863_p80 streptomycin biosynthesis operon regulatory protein singleton unknown function unknown function -1 51925 53073
YP_009021704.1 NC_023863_p38 hypothetical protein singleton unknown function unknown function -1 28069 28347
YP_009021737.1 NC_023863_p71 cell wall hydrolase phrog_938 endolysin lysis -1 45712 46155
YP_009021738.2 NC_023863_p72 hypothetical protein singleton unknown function unknown function -1 46181 46360
YP_009021668.1 NC_023863_p2 hypothetical protein phrog_34933 unknown function unknown function 1 1890 2201
YP_009021699.1 NC_023863_p33 hypothetical protein phrog_11573 unknown function unknown function -1 25561 26034
YP_009021705.1 NC_023863_p39 hypothetical protein singleton unknown function unknown function -1 28344 28547
YP_009021752.1 NC_023863_p83 hypothetical protein singleton unknown function unknown function 1 55277 55660
YP_009021740.1 NC_023863_p74 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism -1 46755 47240
YP_009021696.1 NC_023863_p30 hypothetical protein singleton unknown function unknown function -1 24417 24626
YP_009021698.1 NC_023863_p32 hypothetical protein singleton unknown function unknown function -1 25333 25503
YP_009021686.1 NC_023863_p20 hypothetical protein singleton unknown function unknown function -1 19121 19507
YP_009021734.1 NC_023863_p68 hypothetical protein singleton unknown function unknown function -1 43718 43858
YP_009021726.1 NC_023863_p60 hypothetical protein singleton unknown function unknown function -1 40112 40429
YP_009021676.1 NC_023863_p10 hypothetical protein phrog_10745 unknown function unknown function 1 9032 10075
YP_009021701.1 NC_023863_p35 hypothetical protein phrog_4256 unknown function unknown function -1 27324 27641
YP_009021700.1 NC_023863_p34 5 -3 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 26135 27217
YP_009021695.1 NC_023863_p29 hypothetical protein singleton unknown function unknown function -1 24151 24363
YP_009021677.1 NC_023863_p11 hypothetical protein singleton unknown function unknown function 1 10127 10879
YP_009021679.1 NC_023863_p13 hypothetical protein singleton unknown function unknown function 1 12221 13603
YP_009021708.1 NC_023863_p42 DNA primase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 31491 33218
YP_009021680.1 NC_023863_p14 hypothetical protein singleton unknown function unknown function 1 13615 14025
YP_009021746.1 NC_023863_p77 hypothetical protein singleton unknown function unknown function -1 50928 51077
YP_009021692.1 NC_023863_p26 thymidine kinase phrog_592 thymidine kinase other -1 23076 23642
YP_009021728.1 NC_023863_p62 hypothetical protein singleton unknown function unknown function -1 40974 41426
YP_009021688.1 NC_023863_p22 hypothetical protein singleton unknown function unknown function -1 19996 21276
YP_009021693.1 NC_023863_p27 hypothetical protein singleton unknown function unknown function -1 23647 23883
YP_009021716.1 NC_023863_p50 hypothetical protein singleton unknown function unknown function -1 35930 36166
YP_009021739.1 NC_023863_p73 hypothetical protein singleton unknown function unknown function -1 46508 46639
YP_009021671.1 NC_023863_p5 hypothetical protein phrog_10775 tail protein tail 1 3584 4294
YP_009021754.1 NC_023863_p85 terminase-like family protein phrog_979 terminase large subunit head and packaging 1 57161 59167
YP_009021753.1 NC_023863_p84 hypothetical protein singleton unknown function unknown function 1 56741 57115
YP_009021727.1 NC_023863_p61 hypothetical protein singleton unknown function unknown function -1 40512 40961
YP_009021759.1 NC_023863_p90 hypothetical protein singleton unknown function unknown function 1 63661 65181
YP_009021710.1 NC_023863_p44 hypothetical protein singleton unknown function unknown function -1 33518 33703
YP_009021711.1 NC_023863_p45 RNA ligase 2 phrog_548 RNA ligase DNA, RNA and nucleotide metabolism -1 33762 34910
YP_009021678.1 NC_023863_p12 hypothetical protein singleton unknown function unknown function 1 10890 12191
YP_009021741.1 NC_023863_p75 hypothetical protein singleton unknown function unknown function -1 47305 47622
YP_009021707.1 NC_023863_p41 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29178 31421
YP_009021760.1 NC_023863_p91 hypothetical protein singleton unknown function unknown function 1 65178 65357
YP_009021712.1 NC_023863_p46 hypothetical protein singleton unknown function unknown function -1 34904 35158
YP_009021667.1 NC_023863_p1 hypothetical protein phrog_10818 unknown function unknown function 1 4 1893
YP_009021670.1 NC_023863_p4 hypothetical protein phrog_717 unknown function unknown function 1 3339 3569
YP_009021709.1 NC_023863_p43 hypothetical protein singleton unknown function unknown function -1 33227 33466
YP_009021706.1 NC_023863_p40 HNH endonuclease phrog_6254 HNH endonuclease DNA, RNA and nucleotide metabolism -1 28537 29196
YP_009021722.1 NC_023863_p56 hypothetical protein singleton unknown function unknown function -1 37338 37709
YP_009021719.1 NC_023863_p53 hypothetical protein phrog_15775 unknown function unknown function -1 36594 36785
YP_009021721.1 NC_023863_p55 hypothetical protein singleton unknown function unknown function -1 36998 37336
YP_009021682.1 NC_023863_p16 hypothetical protein singleton unknown function unknown function 1 14546 16060
YP_009021702.1 NC_023863_p36 hypothetical protein singleton unknown function unknown function -1 27641 27844
YP_009021751.1 NC_023863_p82 hypothetical protein singleton unknown function unknown function -1 54400 54543
YP_009021735.1 NC_023863_p69 hypothetical protein singleton unknown function unknown function -1 43860 44000
YP_009021723.1 NC_023863_p57 hypothetical protein singleton unknown function unknown function -1 37711 38121
YP_009021715.1 NC_023863_p49 hypothetical protein singleton unknown function unknown function -1 35685 35936
YP_009021747.1 NC_023863_p78 p10-like protein singleton unknown function unknown function -1 51392 51661
YP_009021755.1 NC_023863_p86 portal protein phrog_332 head-tail adaptor connector 1 59210 61321
YP_009021672.1 NC_023863_p6 dimodular nonribosomal peptide synthetase phrog_5107 amidase lysis 1 4294 5853
YP_009021729.1 NC_023863_p63 hypothetical protein singleton unknown function unknown function -1 41481 41693
YP_009021675.1 NC_023863_p9 tail fiber repeat family protein phrog_14064 tail fiber protein tail 1 6388 9024
YP_009021733.1 NC_023863_p67 hypothetical protein phrog_9123 unknown function unknown function -1 43536 43718
YP_009021691.1 NC_023863_p25 hypothetical protein singleton unknown function unknown function -1 22570 23010
YP_009021714.1 NC_023863_p48 hypothetical protein singleton unknown function unknown function -1 35461 35694
YP_009021758.1 NC_023863_p89 p22 coat protein phrog_267 major head protein head and packaging 1 62412 63584
YP_009021720.1 NC_023863_p54 hypothetical protein singleton unknown function unknown function -1 36778 36996
YP_009021669.1 NC_023863_p3 hypothetical protein singleton unknown function unknown function 1 2389 3249
YP_009021673.1 NC_023863_p7 hypothetical protein singleton unknown function unknown function 1 5856 6065
YP_009021689.1 NC_023863_p23 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 21273 22346
YP_009021724.1 NC_023863_p58 hypothetical protein singleton unknown function unknown function -1 38187 38687
YP_009021694.1 NC_023863_p28 hypothetical protein singleton unknown function unknown function -1 23888 24133
YP_009021750.1 NC_023863_p81 s-adenosyl-l-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other -1 53151 53558
YP_009021742.2 NC_023863_p76 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism -1 47640 50832
YP_009021725.1 NC_023863_p59 hypothetical protein phrog_11908 unknown function unknown function -1 38784 40052
YP_009021703.1 NC_023863_p37 hypothetical protein singleton unknown function unknown function -1 27834 28076
YP_009021687.1 NC_023863_p21 hypothetical protein singleton unknown function unknown function -1 19509 19943
YP_009021685.1 NC_023863_p19 hypothetical protein singleton unknown function unknown function -1 18895 19119
YP_009021731.1 NC_023863_p65 hypothetical protein singleton unknown function unknown function -1 42473 42757
YP_009021713.1 NC_023863_p47 hypothetical protein singleton unknown function unknown function -1 35159 35449
YP_009021730.1 NC_023863_p64 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 41759 42262
YP_009021748.1 NC_023863_p79 hypothetical protein singleton unknown function unknown function -1 51658 51843
YP_009021718.1 NC_023863_p52 hypothetical protein singleton unknown function unknown function -1 36448 36615
YP_009021684.1 NC_023863_p18 hypothetical protein singleton unknown function unknown function 1 18579 18851
YP_009021674.1 NC_023863_p8 hypothetical protein singleton unknown function unknown function 1 6065 6388
YP_009021756.1 NC_023863_p87 hypothetical protein singleton unknown function unknown function 1 61323 61553
YP_009021732.1 NC_023863_p66 hypothetical protein phrog_17203 unknown function unknown function -1 42917 43501
YP_009021717.1 NC_023863_p51 hypothetical protein singleton unknown function unknown function -1 36166 36360
YP_009021757.1 NC_023863_p88 hypothetical protein phrog_13678 unknown function unknown function 1 61645 62385
YP_009021683.1 NC_023863_p17 hypothetical protein singleton unknown function unknown function 1 16073 18526
YP_009021690.1 NC_023863_p24 hypothetical protein singleton unknown function unknown function -1 22355 22558
YP_009021697.1 NC_023863_p31 deoxynucleoside-5-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 24623 25336