Genomic map of Mycobacterium phage Seabiscuit (NC_024136)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024136
Definition
Mycobacterium phage Seabiscuit, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
51781
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
63.65
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009031223.1 NC_024136_p36 hypothetical protein phrog_754 minor tail protein tail 1 28061 28864
YP_009031228.1 NC_024136_p41 hypothetical protein phrog_1860 unknown function unknown function -1 31492 31587
YP_009031247.1 NC_024136_p60 hypothetical protein phrog_5801 unknown function unknown function -1 39676 39750
YP_009031197.1 NC_024136_p10 LysB phrog_102 endolysin lysis 1 5728 6696
YP_009031213.1 NC_024136_p26 minor tail protein phrog_106 minor tail protein tail 1 18891 20948
YP_009031194.1 NC_024136_p7 hypothetical protein phrog_1718 tail protein tail 1 3780 4040
YP_009031234.1 NC_024136_p47 hypothetical protein phrog_1781 unknown function unknown function -1 34647 34877
YP_009031235.1 NC_024136_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34908 35399
YP_009031272.1 NC_024136_p85 hypothetical protein phrog_14636 unknown function unknown function -1 47840 48010
YP_009031277.1 NC_024136_p90 hypothetical protein phrog_5542 unknown function unknown function -1 49973 50326
YP_009031205.1 NC_024136_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12965 13414
YP_009031218.1 NC_024136_p31 hypothetical protein phrog_1397 unknown function unknown function 1 23754 24101
YP_009031259.1 NC_024136_p72 hypothetical protein phrog_1584 unknown function unknown function -1 43901 44218
YP_009031273.1 NC_024136_p86 DNA methylase phrog_363 DNA methyltransferase other -1 48312 48983
YP_009031207.1 NC_024136_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13776 14171
YP_009031232.1 NC_024136_p45 DNA polymerase 1 phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32547 34373
YP_009031260.1 NC_024136_p73 hypothetical protein phrog_1809 unknown function unknown function -1 44215 44622
YP_009031208.1 NC_024136_p21 hypothetical protein phrog_123 tail terminator connector 1 14175 14621
YP_009031233.1 NC_024136_p46 hypothetical protein phrog_6173 unknown function unknown function -1 34396 34650
YP_009031204.1 NC_024136_p17 hypothetical protein phrog_1857 head-tail connector protein connector 1 12729 12965
YP_009031255.1 NC_024136_p68 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 42274 42456
YP_009031214.1 NC_024136_p27 hypothetical protein phrog_1543 minor tail protein tail 1 20945 21127
YP_009031222.1 NC_024136_p35 hypothetical protein phrog_1560 unknown function unknown function 1 27873 28064
YP_009031278.1 NC_024136_p91 hypothetical protein phrog_2212 unknown function unknown function -1 50323 50421
YP_009031188.1 NC_024136_p1 hypothetical protein phrog_4649 unknown function unknown function 1 600 752
YP_009031271.1 NC_024136_p84 hypothetical protein phrog_932 unknown function unknown function -1 47687 47839
YP_009031196.1 NC_024136_p9 LysA phrog_317 endolysin lysis 1 4305 5738
YP_009031258.1 NC_024136_p71 hypothetical protein phrog_17362 unknown function unknown function -1 43677 43904
YP_009031189.1 NC_024136_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 749 1045
YP_009031281.1 NC_024136_p94 hypothetical protein phrog_828 unknown function unknown function -1 51184 51387
YP_009031250.1 NC_024136_p63 hypothetical protein phrog_1019 unknown function unknown function -1 40341 40427
YP_009031230.1 NC_024136_p43 hypothetical protein phrog_9812 unknown function unknown function -1 31883 32134
YP_009031261.1 NC_024136_p74 repressor phrog_357 transcriptional repressor transcription regulation -1 44655 45167
YP_009031246.1 NC_024136_p59 hypothetical protein phrog_11567 unknown function unknown function -1 39477 39653
YP_009031263.1 NC_024136_p76 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46020 46319
YP_009031270.1 NC_024136_p83 DnaJ-like protein phrog_15035 unknown function unknown function -1 47468 47662
YP_009031238.1 NC_024136_p51 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35942 36733
YP_009031201.1 NC_024136_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10178 11059
YP_009031265.1 NC_024136_p78 hypothetical protein phrog_1387 unknown function unknown function -1 46582 46785
YP_009031251.1 NC_024136_p64 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 40424 40723
YP_009031243.1 NC_024136_p56 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38455 38976
YP_009031221.1 NC_024136_p34 hypothetical protein phrog_644 unknown function unknown function 1 27537 27863
YP_009031269.1 NC_024136_p82 hypothetical protein phrog_9026 unknown function unknown function -1 47259 47471
YP_009031276.1 NC_024136_p89 hypothetical protein phrog_1387 unknown function unknown function -1 49776 49976
YP_009031252.1 NC_024136_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 40720 41529
YP_009031206.1 NC_024136_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 13414 13776
YP_009031240.1 NC_024136_p53 RDF protein phrog_221 metallo-phosphoesterase other -1 36871 37638
YP_009031245.1 NC_024136_p58 hypothetical protein phrog_1783 unknown function unknown function -1 39316 39495
YP_009031224.1 NC_024136_p37 hypothetical protein phrog_411 unknown function unknown function 1 28985 29281
YP_009031216.1 NC_024136_p29 hypothetical protein phrog_352 minor tail protein tail 1 22967 23413
YP_009031203.1 NC_024136_p16 major capsid protein phrog_10 major head protein head and packaging 1 11640 12650
YP_009031249.1 NC_024136_p62 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39878 40354
YP_009031275.1 NC_024136_p88 hypothetical protein phrog_3414 unknown function unknown function -1 49324 49608
YP_009031190.1 NC_024136_p3 hypothetical protein phrog_226 minor tail protein tail 1 1080 1514
YP_009031212.1 NC_024136_p25 tapemeasure phrog_305 tail length tape measure protein tail 1 16399 18867
YP_009031202.1 NC_024136_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11118 11630
YP_009031266.1 NC_024136_p79 hypothetical protein phrog_1155 unknown function unknown function -1 46782 46970
YP_009031229.1 NC_024136_p42 hypothetical protein phrog_1971 unknown function unknown function -1 31584 31886
YP_009031192.1 NC_024136_p5 hypothetical protein phrog_1197 tail protein tail 1 2000 3070
YP_009031209.1 NC_024136_p22 major tail protein phrog_117 major tail protein tail 1 14630 15478
YP_009031191.1 NC_024136_p4 hypothetical protein phrog_7087 unknown function unknown function 1 1534 1902
YP_009031210.1 NC_024136_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15587 16386
YP_009031242.1 NC_024136_p55 hypothetical protein phrog_1167 phosphofructokinase other -1 37811 38458
YP_009031231.1 NC_024136_p44 hypothetical protein phrog_383 unknown function unknown function -1 32170 32550
YP_009031220.1 NC_024136_p33 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 25972 27450
YP_009031280.1 NC_024136_p93 hypothetical protein phrog_12306 unknown function unknown function -1 50845 51042
YP_009031268.1 NC_024136_p81 hypothetical protein phrog_2093 unknown function unknown function -1 47134 47262
YP_009031256.1 NC_024136_p69 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42483 43283
YP_009031254.1 NC_024136_p67 hypothetical protein phrog_2184 unknown function unknown function -1 41950 42270
YP_009031253.1 NC_024136_p66 hypothetical protein phrog_520 unknown function unknown function -1 41516 41953
YP_009031217.1 NC_024136_p30 hypothetical protein phrog_981 minor tail protein tail 1 23410 23757
YP_009031239.1 NC_024136_p52 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36726 36866
YP_009031226.1 NC_024136_p39 hypothetical protein phrog_1966 unknown function unknown function -1 31056 31328
YP_009031200.1 NC_024136_p13 portal protein phrog_104 portal protein head and packaging 1 8739 10181
YP_009031264.1 NC_024136_p77 hypothetical protein phrog_1720 unknown function unknown function -1 46316 46585
YP_009031244.1 NC_024136_p57 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38822 39337
YP_009031257.1 NC_024136_p70 hypothetical protein phrog_8167 unknown function unknown function -1 43283 43591
YP_009031236.1 NC_024136_p49 hypothetical protein phrog_2094 unknown function unknown function -1 35434 35739
YP_009031215.1 NC_024136_p28 minor tail protein phrog_110 minor tail protein tail 1 21127 22929
YP_009031225.1 NC_024136_p38 integrase phrog_95 integrase integration and excision 1 29433 30935
YP_009031193.1 NC_024136_p6 hypothetical protein phrog_553 minor tail protein tail 1 3080 3769
YP_009031199.1 NC_024136_p12 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7054 8742
YP_009031241.1 NC_024136_p54 hypothetical protein phrog_1503 unknown function unknown function -1 37635 37814
YP_009031274.1 NC_024136_p87 hypothetical protein phrog_4958 unknown function unknown function -1 48988 49272
YP_009031195.1 NC_024136_p8 hypothetical protein phrog_747 unknown function unknown function 1 4048 4305
YP_009031237.1 NC_024136_p50 hypothetical protein phrog_499 unknown function unknown function -1 35739 35945
YP_009031279.1 NC_024136_p92 hypothetical protein phrog_5419 unknown function unknown function -1 50499 50753
YP_009031267.1 NC_024136_p80 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 46970 47137
YP_009031211.1 NC_024136_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15587 15964
YP_009031219.1 NC_024136_p32 minor tail protein phrog_346 minor tail protein tail 1 24126 25979
YP_009031227.1 NC_024136_p40 hypothetical protein phrog_2035 unknown function unknown function -1 31325 31495
YP_009031262.1 NC_024136_p75 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism -1 45430 46023
YP_009031198.1 NC_024136_p11 hypothetical protein phrog_419 unknown function unknown function 1 6693 7034
YP_009031248.1 NC_024136_p61 hypothetical protein phrog_397 unknown function unknown function -1 39747 39881