Genomic map of Mycobacterium phage Lamina13 (NC_024143)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024143
Definition
Mycobacterium phage Lamina13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53255
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
96
%GC
63.66
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009032081.1 NC_024143_p35 hypothetical protein phrog_754 minor tail protein tail 1 27644 28477
YP_009032082.1 NC_024143_p36 hypothetical protein phrog_411 unknown function unknown function 1 28597 28893
YP_009032069.1 NC_024143_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15146 15523
YP_009032070.1 NC_024143_p24 tapemeasure phrog_305 tail length tape measure protein tail 1 15957 18428
YP_009032062.1 NC_024143_p16 hypothetical protein phrog_1857 head-tail connector protein connector 1 12269 12505
YP_009032055.1 NC_024143_p9 lysin A phrog_317 endolysin lysis 1 4188 5621
YP_009032118.1 NC_024143_p72 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44864 45682
YP_009032088.1 NC_024143_p42 hypothetical protein phrog_1971 unknown function unknown function -1 31586 31873
YP_009032072.1 NC_024143_p26 minor tail protein phrog_1543 minor tail protein tail 1 20528 20710
YP_009032051.1 NC_024143_p5 hypothetical protein phrog_1197 tail protein tail 1 1880 2950
YP_009032049.1 NC_024143_p3 hypothetical protein phrog_226 minor tail protein tail 1 1081 1515
YP_009032077.1 NC_024143_p31 minor tail protein phrog_346 minor tail protein tail 1 23709 25562
YP_009032086.1 NC_024143_p40 hypothetical protein phrog_2035 unknown function unknown function -1 31327 31497
YP_009032047.1 NC_024143_p1 hypothetical protein phrog_4649 unknown function unknown function 1 601 753
YP_009032078.1 NC_024143_p32 minor tail protein, D-ala-D-ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 25555 27033
YP_009032117.1 NC_024143_p71 DNA methylase phrog_67 DNA methyltransferase other -1 43967 44833
YP_009032106.1 NC_024143_p60 hypothetical protein phrog_397 unknown function unknown function -1 39605 39739
YP_009032063.1 NC_024143_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12505 12954
YP_009032121.1 NC_024143_p75 hypothetical protein phrog_6068 unknown function unknown function -1 47189 47302
YP_009032103.1 NC_024143_p57 hypothetical protein phrog_1783 unknown function unknown function -1 39105 39266
YP_009032098.1 NC_024143_p52 phosphoesterase phrog_221 metallo-phosphoesterase other -1 36636 37403
YP_009032133.1 NC_024143_p87 hypothetical protein phrog_26095 unknown function unknown function -1 50378 50524
YP_009032075.1 NC_024143_p29 minor tail protein phrog_981 minor tail protein tail 1 22993 23340
YP_009032076.1 NC_024143_p30 minor tail protein phrog_1397 unknown function unknown function 1 23337 23684
YP_009032093.1 NC_024143_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34685 35176
YP_009032090.1 NC_024143_p44 hypothetical protein phrog_3771 unknown function unknown function -1 32226 32540
YP_009032053.1 NC_024143_p7 hypothetical protein phrog_1718 tail protein tail 1 3663 3923
YP_009032065.1 NC_024143_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13316 13711
YP_009032119.1 NC_024143_p73 hypothetical protein phrog_4285 transposase integration and excision -1 45688 46395
YP_009032060.1 NC_024143_p14 major capsid protein phrog_233 head scaffolding protein head and packaging 1 10663 11175
YP_009032092.1 NC_024143_p46 hypothetical protein phrog_1781 unknown function unknown function -1 34424 34654
YP_009032089.1 NC_024143_p43 hypothetical protein phrog_383 unknown function unknown function -1 31870 32226
YP_009032054.1 NC_024143_p8 hypothetical protein phrog_747 unknown function unknown function 1 3931 4188
YP_009032099.1 NC_024143_p53 hypothetical protein phrog_1503 unknown function unknown function -1 37400 37579
YP_009032135.1 NC_024143_p89 hypothetical protein phrog_5017 unknown function unknown function -1 50737 51102
YP_009032057.1 NC_024143_p11 terminase phrog_9 terminase large subunit head and packaging 1 6599 8287
YP_009032067.1 NC_024143_p21 hypothetical protein phrog_117 major tail protein tail 1 14170 15021
YP_009032129.1 NC_024143_p83 hypothetical protein phrog_1155 unknown function unknown function -1 49731 49919
YP_009032083.1 NC_024143_p37 integrase phrog_95 integrase integration and excision 1 29040 30542
YP_009032052.1 NC_024143_p6 hypothetical protein phrog_553 minor tail protein tail 1 2960 3655
YP_009032074.1 NC_024143_p28 minor tail protein phrog_352 minor tail protein tail 1 22550 22996
YP_009032097.1 NC_024143_p51 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36496 36636
YP_009032128.1 NC_024143_p82 hypothetical protein phrog_1387 unknown function unknown function -1 49531 49734
YP_009032079.1 NC_024143_p33 hypothetical protein phrog_644 unknown function unknown function 1 27123 27446
YP_009032142.1 NC_024143_p96 hypothetical protein phrog_18559 unknown function unknown function -1 52506 52655
YP_009032096.1 NC_024143_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35712 36488
YP_009032122.1 NC_024143_p76 hypothetical protein phrog_5947 unknown function unknown function -1 47295 47447
YP_009032140.1 NC_024143_p94 hypothetical protein phrog_13961 unknown function unknown function -1 52009 52194
YP_009032066.1 NC_024143_p20 hypothetical protein phrog_123 tail terminator connector 1 13715 14161
YP_009032107.1 NC_024143_p61 DNA methylase phrog_67 DNA methyltransferase other -1 39765 41357
YP_009032050.1 NC_024143_p4 hypothetical protein phrog_7087 unknown function unknown function 1 1563 1799
YP_009032110.1 NC_024143_p64 hypothetical protein phrog_1019 unknown function unknown function -1 41820 41951
YP_009032120.1 NC_024143_p74 hypothetical protein phrog_4604 unknown function unknown function -1 46731 47192
YP_009032095.1 NC_024143_p49 hypothetical protein phrog_499 unknown function unknown function -1 35533 35715
YP_009032105.1 NC_024143_p59 hypothetical protein phrog_13342 unknown function unknown function -1 39471 39608
YP_009032071.1 NC_024143_p25 minor tail protein phrog_106 minor tail protein tail 1 18452 20509
YP_009032048.1 NC_024143_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 750 1046
YP_009032056.1 NC_024143_p10 lysin B phrog_102 endolysin lysis 1 5611 6579
YP_009032139.1 NC_024143_p93 hypothetical protein phrog_828 unknown function unknown function 1 51757 51963
YP_009032087.1 NC_024143_p41 hypothetical protein phrog_1860 unknown function unknown function -1 31494 31640
YP_009032094.1 NC_024143_p48 hypothetical protein phrog_2094 unknown function unknown function -1 35211 35540
YP_009032114.1 NC_024143_p68 hypothetical protein phrog_1705 unknown function unknown function -1 43342 43488
YP_009032100.1 NC_024143_p54 hypothetical protein phrog_1167 phosphofructokinase other -1 37576 38247
YP_009032141.1 NC_024143_p95 hypothetical protein phrog_3574 unknown function unknown function 1 52275 52463
YP_009032137.1 NC_024143_p91 hypothetical protein phrog_2212 unknown function unknown function -1 51284 51403
YP_009032102.1 NC_024143_p56 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38584 39126
YP_009032125.1 NC_024143_p79 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 48195 48707
YP_009032134.1 NC_024143_p88 hypothetical protein singleton unknown function unknown function -1 50657 50737
YP_009032064.1 NC_024143_p18 hypothetical protein phrog_320 head closure Hc1 connector 1 12954 13316
YP_009032111.1 NC_024143_p65 hypothetical protein phrog_647 unknown function unknown function -1 41903 42283
YP_009032080.1 NC_024143_p34 hypothetical protein phrog_1560 unknown function unknown function 1 27456 27647
YP_009032085.1 NC_024143_p39 hypothetical protein phrog_2387 nucleotide kinase other -1 30932 31327
YP_009032068.1 NC_024143_p22 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15146 15945
YP_009032123.1 NC_024143_p77 hypothetical protein phrog_1584 unknown function unknown function -1 47444 47761
YP_009032084.1 NC_024143_p38 hypothetical protein phrog_1966 unknown function unknown function -1 30663 30935
YP_009032101.1 NC_024143_p55 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38244 38765
YP_009032131.1 NC_024143_p85 hypothetical protein phrog_2093 unknown function unknown function -1 50083 50211
YP_009032130.1 NC_024143_p84 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 49919 50086
YP_009032108.1 NC_024143_p62 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism -1 40376 41002
YP_009032136.1 NC_024143_p90 hypothetical protein phrog_5533 unknown function unknown function -1 51069 51254
YP_009032127.1 NC_024143_p81 hypothetical protein phrog_1720 unknown function unknown function -1 49265 49534
YP_009032115.1 NC_024143_p69 hypothetical protein phrog_520 unknown function unknown function -1 43485 43778
YP_009032138.1 NC_024143_p92 hypothetical protein phrog_2985 unknown function unknown function 1 51519 51674
YP_009032112.1 NC_024143_p66 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42280 42549
YP_009032059.1 NC_024143_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9723 10604
YP_009032058.1 NC_024143_p12 portal phrog_104 portal protein head and packaging 1 8284 9726
YP_009032126.1 NC_024143_p80 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 48969 49268
YP_009032091.1 NC_024143_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32561 34387
YP_009032061.1 NC_024143_p15 hypothetical protein phrog_10 major head protein head and packaging 1 11185 12183
YP_009032073.1 NC_024143_p27 minor tail protein phrog_110 minor tail protein tail 1 20710 22512
YP_009032113.1 NC_024143_p67 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42546 43355
YP_009032116.1 NC_024143_p70 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 43782 43964
YP_009032132.1 NC_024143_p86 hypothetical protein phrog_932 unknown function unknown function -1 50232 50381
YP_009032109.1 NC_024143_p63 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41354 41833
YP_009032104.1 NC_024143_p58 hypothetical protein phrog_11567 unknown function unknown function -1 39266 39442
YP_009032124.1 NC_024143_p78 hypothetical protein phrog_1809 unknown function unknown function -1 47758 48153