| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024143 |
Definition |
Mycobacterium phage Lamina13, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53255 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
63.66 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009032081.1 | NC_024143_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 27644 | 28477 |
| YP_009032082.1 | NC_024143_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28597 | 28893 |
| YP_009032069.1 | NC_024143_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15146 | 15523 |
| YP_009032070.1 | NC_024143_p24 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 15957 | 18428 |
| YP_009032062.1 | NC_024143_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12269 | 12505 |
| YP_009032055.1 | NC_024143_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4188 | 5621 |
| YP_009032118.1 | NC_024143_p72 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44864 | 45682 |
| YP_009032088.1 | NC_024143_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31586 | 31873 |
| YP_009032072.1 | NC_024143_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 20528 | 20710 |
| YP_009032051.1 | NC_024143_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 1880 | 2950 |
| YP_009032049.1 | NC_024143_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1081 | 1515 |
| YP_009032077.1 | NC_024143_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 23709 | 25562 |
| YP_009032086.1 | NC_024143_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31327 | 31497 |
| YP_009032047.1 | NC_024143_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 601 | 753 |
| YP_009032078.1 | NC_024143_p32 | minor tail protein, D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25555 | 27033 |
| YP_009032117.1 | NC_024143_p71 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 43967 | 44833 |
| YP_009032106.1 | NC_024143_p60 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39605 | 39739 |
| YP_009032063.1 | NC_024143_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12505 | 12954 |
| YP_009032121.1 | NC_024143_p75 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 47189 | 47302 |
| YP_009032103.1 | NC_024143_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39105 | 39266 |
| YP_009032098.1 | NC_024143_p52 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36636 | 37403 |
| YP_009032133.1 | NC_024143_p87 | hypothetical protein | phrog_26095 | unknown function | unknown function | -1 | 50378 | 50524 |
| YP_009032075.1 | NC_024143_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 22993 | 23340 |
| YP_009032076.1 | NC_024143_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 23337 | 23684 |
| YP_009032093.1 | NC_024143_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34685 | 35176 |
| YP_009032090.1 | NC_024143_p44 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 32226 | 32540 |
| YP_009032053.1 | NC_024143_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3663 | 3923 |
| YP_009032065.1 | NC_024143_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13316 | 13711 |
| YP_009032119.1 | NC_024143_p73 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 45688 | 46395 |
| YP_009032060.1 | NC_024143_p14 | major capsid protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10663 | 11175 |
| YP_009032092.1 | NC_024143_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34424 | 34654 |
| YP_009032089.1 | NC_024143_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 31870 | 32226 |
| YP_009032054.1 | NC_024143_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 3931 | 4188 |
| YP_009032099.1 | NC_024143_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37400 | 37579 |
| YP_009032135.1 | NC_024143_p89 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 50737 | 51102 |
| YP_009032057.1 | NC_024143_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6599 | 8287 |
| YP_009032067.1 | NC_024143_p21 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 14170 | 15021 |
| YP_009032129.1 | NC_024143_p83 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49731 | 49919 |
| YP_009032083.1 | NC_024143_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29040 | 30542 |
| YP_009032052.1 | NC_024143_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 2960 | 3655 |
| YP_009032074.1 | NC_024143_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 22550 | 22996 |
| YP_009032097.1 | NC_024143_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36496 | 36636 |
| YP_009032128.1 | NC_024143_p82 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49531 | 49734 |
| YP_009032079.1 | NC_024143_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27123 | 27446 |
| YP_009032142.1 | NC_024143_p96 | hypothetical protein | phrog_18559 | unknown function | unknown function | -1 | 52506 | 52655 |
| YP_009032096.1 | NC_024143_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35712 | 36488 |
| YP_009032122.1 | NC_024143_p76 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 47295 | 47447 |
| YP_009032140.1 | NC_024143_p94 | hypothetical protein | phrog_13961 | unknown function | unknown function | -1 | 52009 | 52194 |
| YP_009032066.1 | NC_024143_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13715 | 14161 |
| YP_009032107.1 | NC_024143_p61 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 39765 | 41357 |
| YP_009032050.1 | NC_024143_p4 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1563 | 1799 |
| YP_009032110.1 | NC_024143_p64 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41820 | 41951 |
| YP_009032120.1 | NC_024143_p74 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 46731 | 47192 |
| YP_009032095.1 | NC_024143_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35533 | 35715 |
| YP_009032105.1 | NC_024143_p59 | hypothetical protein | phrog_13342 | unknown function | unknown function | -1 | 39471 | 39608 |
| YP_009032071.1 | NC_024143_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18452 | 20509 |
| YP_009032048.1 | NC_024143_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 750 | 1046 |
| YP_009032056.1 | NC_024143_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5611 | 6579 |
| YP_009032139.1 | NC_024143_p93 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 51757 | 51963 |
| YP_009032087.1 | NC_024143_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31494 | 31640 |
| YP_009032094.1 | NC_024143_p48 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 35211 | 35540 |
| YP_009032114.1 | NC_024143_p68 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43342 | 43488 |
| YP_009032100.1 | NC_024143_p54 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37576 | 38247 |
| YP_009032141.1 | NC_024143_p95 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 52275 | 52463 |
| YP_009032137.1 | NC_024143_p91 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51284 | 51403 |
| YP_009032102.1 | NC_024143_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38584 | 39126 |
| YP_009032125.1 | NC_024143_p79 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 48195 | 48707 |
| YP_009032134.1 | NC_024143_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50657 | 50737 |
| YP_009032064.1 | NC_024143_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 12954 | 13316 |
| YP_009032111.1 | NC_024143_p65 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 41903 | 42283 |
| YP_009032080.1 | NC_024143_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27456 | 27647 |
| YP_009032085.1 | NC_024143_p39 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 30932 | 31327 |
| YP_009032068.1 | NC_024143_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15146 | 15945 |
| YP_009032123.1 | NC_024143_p77 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 47444 | 47761 |
| YP_009032084.1 | NC_024143_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 30663 | 30935 |
| YP_009032101.1 | NC_024143_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38244 | 38765 |
| YP_009032131.1 | NC_024143_p85 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 50083 | 50211 |
| YP_009032130.1 | NC_024143_p84 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49919 | 50086 |
| YP_009032108.1 | NC_024143_p62 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 40376 | 41002 |
| YP_009032136.1 | NC_024143_p90 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 51069 | 51254 |
| YP_009032127.1 | NC_024143_p81 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 49265 | 49534 |
| YP_009032115.1 | NC_024143_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43485 | 43778 |
| YP_009032138.1 | NC_024143_p92 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 51519 | 51674 |
| YP_009032112.1 | NC_024143_p66 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42280 | 42549 |
| YP_009032059.1 | NC_024143_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9723 | 10604 |
| YP_009032058.1 | NC_024143_p12 | portal | phrog_104 | portal protein | head and packaging | 1 | 8284 | 9726 |
| YP_009032126.1 | NC_024143_p80 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48969 | 49268 |
| YP_009032091.1 | NC_024143_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32561 | 34387 |
| YP_009032061.1 | NC_024143_p15 | hypothetical protein | phrog_10 | major head protein | head and packaging | 1 | 11185 | 12183 |
| YP_009032073.1 | NC_024143_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20710 | 22512 |
| YP_009032113.1 | NC_024143_p67 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42546 | 43355 |
| YP_009032116.1 | NC_024143_p70 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43782 | 43964 |
| YP_009032132.1 | NC_024143_p86 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 50232 | 50381 |
| YP_009032109.1 | NC_024143_p63 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41354 | 41833 |
| YP_009032104.1 | NC_024143_p58 | hypothetical protein | phrog_11567 | unknown function | unknown function | -1 | 39266 | 39442 |
| YP_009032124.1 | NC_024143_p78 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 47758 | 48153 |