| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024144 |
Definition |
Clostridium phage CDMH1 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus. |
DB of origin |
REFSEQ |
Length |
54279 |
Host Name |
Clostridium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
28.44 |
Number of singletons |
1 |
Number of paralogs |
7 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009032194.1 | NC_024144_p52 | regulatory protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 38822 | 39019 |
| YP_009032156.1 | NC_024144_p14 | tail sheath protein | phrog_279 | tail sheath | tail | 1 | 8836 | 10146 |
| YP_009032163.1 | NC_024144_p21 | hypothetical protein | phrog_888 | unknown function | unknown function | 1 | 13678 | 14448 |
| YP_009032164.1 | NC_024144_p22 | tape measure protein | phrog_1068 | tail length tape measure protein | tail | 1 | 14518 | 16860 |
| YP_009032170.1 | NC_024144_p28 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 21185 | 21802 |
| YP_009032154.1 | NC_024144_p12 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 8229 | 8666 |
| YP_009032178.1 | NC_024144_p36 | AgrB | phrog_10353 | unknown function | unknown function | -1 | 26315 | 26908 |
| YP_009032209.1 | NC_024144_p67 | hypothetical protein | phrog_3221 | unknown function | unknown function | 1 | 44206 | 44379 |
| YP_009032212.1 | NC_024144_p70 | hypothetical protein | phrog_7099 | unknown function | unknown function | 1 | 44932 | 45207 |
| YP_009032155.1 | NC_024144_p13 | hypothetical protein | phrog_966 | unknown function | unknown function | 1 | 8659 | 8835 |
| YP_009032215.1 | NC_024144_p73 | hypothetical protein | phrog_1974 | unknown function | unknown function | 1 | 46671 | 47675 |
| YP_009032192.1 | NC_024144_p50 | hypothetical protein | phrog_13038 | unknown function | unknown function | 1 | 37959 | 38144 |
| YP_009032216.1 | NC_024144_p74 | hypothetical protein | phrog_6412 | unknown function | unknown function | 1 | 47650 | 47976 |
| YP_009032221.1 | NC_024144_p79 | endodeoxyribonuclease protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 49071 | 49478 |
| YP_009032150.1 | NC_024144_p8 | major capsid protein | phrog_422 | major head protein | head and packaging | 1 | 5927 | 6826 |
| YP_009032166.1 | NC_024144_p24 | cell wall hydrolase protein | phrog_400 | tail protein | tail | 1 | 17558 | 19447 |
| YP_009032226.1 | NC_024144_p84 | signalling/NTPase protein | phrog_18297 | unknown function | unknown function | 1 | 52136 | 54211 |
| YP_009032174.1 | NC_024144_p32 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 24647 | 24829 |
| YP_009032172.1 | NC_024144_p30 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 22635 | 24329 |
| YP_009032210.1 | NC_024144_p68 | hypothetical protein | phrog_6827 | unknown function | unknown function | 1 | 44379 | 44504 |
| YP_009032173.1 | NC_024144_p31 | hypothetical protein | phrog_1626 | rhodanese-related sulfurtransferase | other | 1 | 24354 | 24647 |
| YP_009032196.1 | NC_024144_p54 | consaerved hypothetical protein | phrog_4222 | unknown function | unknown function | 1 | 39467 | 39667 |
| YP_009032184.1 | NC_024144_p42 | regulatory protein | phrog_1847 | unknown function | unknown function | -1 | 32645 | 34213 |
| YP_009032223.1 | NC_024144_p81 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 50312 | 50800 |
| YP_009032187.1 | NC_024144_p45 | anti-repressor protein | phrog_373 | anti-repressor | transcription regulation | 1 | 35683 | 36474 |
| YP_009032202.1 | NC_024144_p60 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42259 | 42540 |
| YP_009032208.1 | NC_024144_p66 | hypothetical protein | phrog_37062 | unknown function | unknown function | 1 | 44063 | 44209 |
| YP_009032153.1 | NC_024144_p11 | tail protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7811 | 8236 |
| YP_009032190.1 | NC_024144_p48 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 37071 | 37259 |
| YP_009032213.1 | NC_024144_p71 | DNA methylase protein | phrog_116 | DNA methyltransferase | other | 1 | 45303 | 46376 |
| YP_009032161.1 | NC_024144_p19 | hypothetical protein | phrog_3896 | unknown function | unknown function | 1 | 12152 | 12394 |
| YP_009032162.1 | NC_024144_p20 | anti-repressor protein | phrog_2011 | anti-repressor Ant | transcription regulation | 1 | 12512 | 13399 |
| YP_009032181.1 | NC_024144_p39 | regulatory protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 29844 | 30233 |
| YP_009032186.1 | NC_024144_p44 | transcriptional regulator protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 35454 | 35690 |
| YP_009032168.1 | NC_024144_p26 | conserved hypothetical protein (XkdS-like) | phrog_120 | baseplate wedge subunit | tail | 1 | 19726 | 20145 |
| YP_009032220.1 | NC_024144_p78 | hypothetical protein | phrog_3794 | unknown function | unknown function | 1 | 48961 | 49074 |
| YP_009032182.1 | NC_024144_p40 | regulatory protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 30273 | 30659 |
| YP_009032189.1 | NC_024144_p47 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | -1 | 36656 | 36967 |
| YP_009032147.1 | NC_024144_p5 | hypothetical protein | phrog_5106 | unknown function | unknown function | 1 | 4791 | 5042 |
| YP_009032165.1 | NC_024144_p23 | cell wall hydrolase/LysM protein | phrog_380 | endolysin | lysis | 1 | 16876 | 17565 |
| YP_009032167.1 | NC_024144_p25 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 19461 | 19721 |
| YP_009032211.1 | NC_024144_p69 | hypothetical protein | phrog_2999 | unknown function | unknown function | 1 | 44497 | 44832 |
| YP_009032205.1 | NC_024144_p63 | hypothetical protein | phrog_10069 | unknown function | unknown function | 1 | 43197 | 43562 |
| YP_009032151.1 | NC_024144_p9 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 7060 | 7470 |
| YP_009032149.1 | NC_024144_p7 | minor structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5352 | 5915 |
| YP_009032198.1 | NC_024144_p56 | conserved hypothetical protein (Gp157-like) | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 39992 | 40501 |
| YP_009032148.1 | NC_024144_p6 | hypothetical protein | phrog_4166 | unknown function | unknown function | 1 | 5113 | 5307 |
| YP_009032225.1 | NC_024144_p83 | regulatory protein | phrog_463 | anti-repressor | transcription regulation | 1 | 51277 | 52038 |
| YP_009032177.1 | NC_024144_p35 | AgrD | singleton | unknown function | unknown function | -1 | 26176 | 26289 |
| YP_009032218.1 | NC_024144_p76 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 48157 | 48513 |
| YP_009032157.1 | NC_024144_p15 | core tail protein | phrog_365 | tail protein | tail | 1 | 10171 | 10641 |
| YP_009032160.1 | NC_024144_p18 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 11718 | 11879 |
| YP_009032199.1 | NC_024144_p57 | essential recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40511 | 41095 |
| YP_009032183.1 | NC_024144_p41 | integrase protein | phrog_1 | integrase | integration and excision | -1 | 31019 | 32167 |
| YP_009032145.1 | NC_024144_p3 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 1912 | 3351 |
| YP_009032185.1 | NC_024144_p43 | repressor protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 34944 | 35309 |
| YP_009032158.1 | NC_024144_p16 | hypothetical protein | phrog_3466 | unknown function | unknown function | 1 | 10695 | 10952 |
| YP_009032206.1 | NC_024144_p64 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 43566 | 43946 |
| YP_009032204.1 | NC_024144_p62 | hypothetical protein | phrog_4813 | unknown function | unknown function | 1 | 42943 | 43200 |
| YP_009032222.1 | NC_024144_p80 | anti-repressor protein | phrog_373 | anti-repressor | transcription regulation | 1 | 49493 | 50218 |
| YP_009032191.1 | NC_024144_p49 | anti-repressor protein | phrog_463 | anti-repressor | transcription regulation | 1 | 37262 | 37912 |
| YP_009032201.1 | NC_024144_p59 | hypothetical protein | phrog_3253 | unknown function | unknown function | 1 | 42070 | 42243 |
| YP_009032203.1 | NC_024144_p61 | hypothetical protein | phrog_20040 | unknown function | unknown function | 1 | 42615 | 42869 |
| YP_009032197.1 | NC_024144_p55 | hypothetical protein | phrog_8974 | unknown function | unknown function | 1 | 39664 | 39909 |
| YP_009032224.1 | NC_024144_p82 | hypothetical protein | phrog_26154 | unknown function | unknown function | 1 | 51182 | 51307 |
| YP_009032207.1 | NC_024144_p65 | hypothetical protein | phrog_2963 | unknown function | unknown function | 1 | 43930 | 44076 |
| YP_009032143.1 | NC_024144_p1 | phage terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 37 | 675 |
| YP_009032214.1 | NC_024144_p72 | hypothetical protein | phrog_2462 | unknown function | unknown function | 1 | 46453 | 46674 |
| YP_009032200.1 | NC_024144_p58 | DnaD protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 41110 | 42009 |
| YP_009032195.1 | NC_024144_p53 | DNA binding protein | phrog_4370 | excisionase | integration and excision | 1 | 39036 | 39365 |
| YP_009032188.1 | NC_024144_p46 | hypothetical protein | phrog_582 | Arc-like repressor | transcription regulation | 1 | 36533 | 36670 |
| YP_009032219.1 | NC_024144_p77 | peptide chain release factor protein | phrog_4279 | unknown function | unknown function | 1 | 48607 | 48945 |
| YP_009032146.1 | NC_024144_p4 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 3341 | 4834 |
| YP_009032171.1 | NC_024144_p29 | tail fiber protein | phrog_2137 | tail fiber protein | tail | 1 | 21814 | 22617 |
| YP_009032179.1 | NC_024144_p37 | AgrC | phrog_16980 | unknown function | unknown function | -1 | 26901 | 28262 |
| YP_009032159.1 | NC_024144_p17 | conserved hypothetical protein (XkdN-like) | phrog_389 | tail protein XkdN-like | tail | 1 | 10957 | 11397 |
| YP_009032152.1 | NC_024144_p10 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 7464 | 7811 |
| YP_009032193.1 | NC_024144_p51 | hypothetical protein | phrog_21028 | unknown function | unknown function | -1 | 38183 | 38809 |
| YP_009032144.1 | NC_024144_p2 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 653 | 1906 |
| YP_009032169.1 | NC_024144_p27 | baseplate-J protein | phrog_6 | baseplate wedge subunit | tail | 1 | 20158 | 21192 |
| YP_009032176.1 | NC_024144_p34 | endolysin protein | phrog_435 | endolysin | lysis | 1 | 25322 | 26134 |
| YP_009032175.1 | NC_024144_p33 | holin protein | phrog_199 | holin | lysis | 1 | 24891 | 25322 |
| YP_009032217.1 | NC_024144_p75 | hypothetical protein | phrog_2994 | unknown function | unknown function | 1 | 47996 | 48163 |
| YP_009032180.1 | NC_024144_p38 | sigma factor protein | phrog_2569 | unknown function | unknown function | -1 | 28744 | 28932 |