Genomic map of Clostridium phage CDMH1 (NC_024144)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024144
Definition
Clostridium phage CDMH1 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
REFSEQ
Length
54279
Host Name
Clostridium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
84
%GC
28.44
Number of singletons
1
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009032194.1 NC_024144_p52 regulatory protein phrog_3 transcriptional repressor transcription regulation 1 38822 39019
YP_009032156.1 NC_024144_p14 tail sheath protein phrog_279 tail sheath tail 1 8836 10146
YP_009032163.1 NC_024144_p21 hypothetical protein phrog_888 unknown function unknown function 1 13678 14448
YP_009032164.1 NC_024144_p22 tape measure protein phrog_1068 tail length tape measure protein tail 1 14518 16860
YP_009032170.1 NC_024144_p28 hypothetical protein phrog_521 tail protein tail 1 21185 21802
YP_009032154.1 NC_024144_p12 hypothetical protein phrog_525 unknown function unknown function 1 8229 8666
YP_009032178.1 NC_024144_p36 AgrB phrog_10353 unknown function unknown function -1 26315 26908
YP_009032209.1 NC_024144_p67 hypothetical protein phrog_3221 unknown function unknown function 1 44206 44379
YP_009032212.1 NC_024144_p70 hypothetical protein phrog_7099 unknown function unknown function 1 44932 45207
YP_009032155.1 NC_024144_p13 hypothetical protein phrog_966 unknown function unknown function 1 8659 8835
YP_009032215.1 NC_024144_p73 hypothetical protein phrog_1974 unknown function unknown function 1 46671 47675
YP_009032192.1 NC_024144_p50 hypothetical protein phrog_13038 unknown function unknown function 1 37959 38144
YP_009032216.1 NC_024144_p74 hypothetical protein phrog_6412 unknown function unknown function 1 47650 47976
YP_009032221.1 NC_024144_p79 endodeoxyribonuclease protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 49071 49478
YP_009032150.1 NC_024144_p8 major capsid protein phrog_422 major head protein head and packaging 1 5927 6826
YP_009032166.1 NC_024144_p24 cell wall hydrolase protein phrog_400 tail protein tail 1 17558 19447
YP_009032226.1 NC_024144_p84 signalling/NTPase protein phrog_18297 unknown function unknown function 1 52136 54211
YP_009032174.1 NC_024144_p32 hypothetical protein phrog_1243 unknown function unknown function 1 24647 24829
YP_009032172.1 NC_024144_p30 hypothetical protein phrog_1589 unknown function unknown function 1 22635 24329
YP_009032210.1 NC_024144_p68 hypothetical protein phrog_6827 unknown function unknown function 1 44379 44504
YP_009032173.1 NC_024144_p31 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 24354 24647
YP_009032196.1 NC_024144_p54 consaerved hypothetical protein phrog_4222 unknown function unknown function 1 39467 39667
YP_009032184.1 NC_024144_p42 regulatory protein phrog_1847 unknown function unknown function -1 32645 34213
YP_009032223.1 NC_024144_p81 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 50312 50800
YP_009032187.1 NC_024144_p45 anti-repressor protein phrog_373 anti-repressor transcription regulation 1 35683 36474
YP_009032202.1 NC_024144_p60 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 42259 42540
YP_009032208.1 NC_024144_p66 hypothetical protein phrog_37062 unknown function unknown function 1 44063 44209
YP_009032153.1 NC_024144_p11 tail protein phrog_5 tail completion or Neck1 protein connector 1 7811 8236
YP_009032190.1 NC_024144_p48 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 37071 37259
YP_009032213.1 NC_024144_p71 DNA methylase protein phrog_116 DNA methyltransferase other 1 45303 46376
YP_009032161.1 NC_024144_p19 hypothetical protein phrog_3896 unknown function unknown function 1 12152 12394
YP_009032162.1 NC_024144_p20 anti-repressor protein phrog_2011 anti-repressor Ant transcription regulation 1 12512 13399
YP_009032181.1 NC_024144_p39 regulatory protein phrog_1077 transcriptional regulator transcription regulation 1 29844 30233
YP_009032186.1 NC_024144_p44 transcriptional regulator protein phrog_3 transcriptional repressor transcription regulation 1 35454 35690
YP_009032168.1 NC_024144_p26 conserved hypothetical protein (XkdS-like) phrog_120 baseplate wedge subunit tail 1 19726 20145
YP_009032220.1 NC_024144_p78 hypothetical protein phrog_3794 unknown function unknown function 1 48961 49074
YP_009032182.1 NC_024144_p40 regulatory protein phrog_1077 transcriptional regulator transcription regulation 1 30273 30659
YP_009032189.1 NC_024144_p47 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 36656 36967
YP_009032147.1 NC_024144_p5 hypothetical protein phrog_5106 unknown function unknown function 1 4791 5042
YP_009032165.1 NC_024144_p23 cell wall hydrolase/LysM protein phrog_380 endolysin lysis 1 16876 17565
YP_009032167.1 NC_024144_p25 hypothetical protein phrog_579 unknown function unknown function 1 19461 19721
YP_009032211.1 NC_024144_p69 hypothetical protein phrog_2999 unknown function unknown function 1 44497 44832
YP_009032205.1 NC_024144_p63 hypothetical protein phrog_10069 unknown function unknown function 1 43197 43562
YP_009032151.1 NC_024144_p9 hypothetical protein phrog_132 head-tail adaptor connector 1 7060 7470
YP_009032149.1 NC_024144_p7 minor structural protein phrog_194 head scaffolding protein head and packaging 1 5352 5915
YP_009032198.1 NC_024144_p56 conserved hypothetical protein (Gp157-like) phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 39992 40501
YP_009032148.1 NC_024144_p6 hypothetical protein phrog_4166 unknown function unknown function 1 5113 5307
YP_009032225.1 NC_024144_p83 regulatory protein phrog_463 anti-repressor transcription regulation 1 51277 52038
YP_009032177.1 NC_024144_p35 AgrD singleton unknown function unknown function -1 26176 26289
YP_009032218.1 NC_024144_p76 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 48157 48513
YP_009032157.1 NC_024144_p15 core tail protein phrog_365 tail protein tail 1 10171 10641
YP_009032160.1 NC_024144_p18 hypothetical protein phrog_738 unknown function unknown function 1 11718 11879
YP_009032199.1 NC_024144_p57 essential recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 40511 41095
YP_009032183.1 NC_024144_p41 integrase protein phrog_1 integrase integration and excision -1 31019 32167
YP_009032145.1 NC_024144_p3 phage portal protein phrog_64 portal protein head and packaging 1 1912 3351
YP_009032185.1 NC_024144_p43 repressor protein phrog_8 transcriptional regulator transcription regulation -1 34944 35309
YP_009032158.1 NC_024144_p16 hypothetical protein phrog_3466 unknown function unknown function 1 10695 10952
YP_009032206.1 NC_024144_p64 hypothetical protein phrog_1310 unknown function unknown function 1 43566 43946
YP_009032204.1 NC_024144_p62 hypothetical protein phrog_4813 unknown function unknown function 1 42943 43200
YP_009032222.1 NC_024144_p80 anti-repressor protein phrog_373 anti-repressor transcription regulation 1 49493 50218
YP_009032191.1 NC_024144_p49 anti-repressor protein phrog_463 anti-repressor transcription regulation 1 37262 37912
YP_009032201.1 NC_024144_p59 hypothetical protein phrog_3253 unknown function unknown function 1 42070 42243
YP_009032203.1 NC_024144_p61 hypothetical protein phrog_20040 unknown function unknown function 1 42615 42869
YP_009032197.1 NC_024144_p55 hypothetical protein phrog_8974 unknown function unknown function 1 39664 39909
YP_009032224.1 NC_024144_p82 hypothetical protein phrog_26154 unknown function unknown function 1 51182 51307
YP_009032207.1 NC_024144_p65 hypothetical protein phrog_2963 unknown function unknown function 1 43930 44076
YP_009032143.1 NC_024144_p1 phage terminase small subunit phrog_509 terminase small subunit head and packaging 1 37 675
YP_009032214.1 NC_024144_p72 hypothetical protein phrog_2462 unknown function unknown function 1 46453 46674
YP_009032200.1 NC_024144_p58 DnaD protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 41110 42009
YP_009032195.1 NC_024144_p53 DNA binding protein phrog_4370 excisionase integration and excision 1 39036 39365
YP_009032188.1 NC_024144_p46 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 36533 36670
YP_009032219.1 NC_024144_p77 peptide chain release factor protein phrog_4279 unknown function unknown function 1 48607 48945
YP_009032146.1 NC_024144_p4 minor head protein phrog_115 minor head protein head and packaging 1 3341 4834
YP_009032171.1 NC_024144_p29 tail fiber protein phrog_2137 tail fiber protein tail 1 21814 22617
YP_009032179.1 NC_024144_p37 AgrC phrog_16980 unknown function unknown function -1 26901 28262
YP_009032159.1 NC_024144_p17 conserved hypothetical protein (XkdN-like) phrog_389 tail protein XkdN-like tail 1 10957 11397
YP_009032152.1 NC_024144_p10 hypothetical protein phrog_615 head-tail adaptor connector 1 7464 7811
YP_009032193.1 NC_024144_p51 hypothetical protein phrog_21028 unknown function unknown function -1 38183 38809
YP_009032144.1 NC_024144_p2 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 653 1906
YP_009032169.1 NC_024144_p27 baseplate-J protein phrog_6 baseplate wedge subunit tail 1 20158 21192
YP_009032176.1 NC_024144_p34 endolysin protein phrog_435 endolysin lysis 1 25322 26134
YP_009032175.1 NC_024144_p33 holin protein phrog_199 holin lysis 1 24891 25322
YP_009032217.1 NC_024144_p75 hypothetical protein phrog_2994 unknown function unknown function 1 47996 48163
YP_009032180.1 NC_024144_p38 sigma factor protein phrog_2569 unknown function unknown function -1 28744 28932