| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024149 |
Definition |
Lactoccocus phage WP-2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Negarvirus; Lactococcus virus WP2. |
DB of origin |
REFSEQ |
Length |
18899 |
Host Name |
Lactococcus garvieae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
24 |
%GC |
31.11 |
Number of singletons |
14 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009032587.1 | NC_024149_p10 | hypothetical protein | phrog_16072 | unknown function | unknown function | 1 | 7332 | 7613 |
| YP_009032592.1 | NC_024149_p15 | endolysin | singleton | unknown function | unknown function | 1 | 8941 | 10320 |
| YP_009032596.1 | NC_024149_p19 | holin | phrog_199 | holin | lysis | -1 | 12859 | 13245 |
| YP_009032578.1 | NC_024149_p1 | hypothetical protein | phrog_8577 | endolysin | lysis | 1 | 579 | 1262 |
| YP_009032591.1 | NC_024149_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8615 | 8890 |
| YP_009032594.1 | NC_024149_p17 | major tail protein | phrog_2248 | tail protein | tail | -1 | 10857 | 12590 |
| YP_009032580.1 | NC_024149_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1621 | 1827 |
| YP_009032601.1 | NC_024149_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18431 | 18613 |
| YP_009032589.1 | NC_024149_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8093 | 8338 |
| YP_009032586.1 | NC_024149_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7078 | 7335 |
| YP_009032593.1 | NC_024149_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10322 | 10828 |
| YP_009032595.1 | NC_024149_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12628 | 12858 |
| YP_009032600.1 | NC_024149_p23 | major capsid protein | phrog_2006 | major head protein | head and packaging | -1 | 16978 | 18354 |
| YP_009032598.1 | NC_024149_p21 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 15207 | 15851 |
| YP_009032583.1 | NC_024149_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3626 | 4162 |
| YP_009032584.1 | NC_024149_p7 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4285 | 6684 |
| YP_009032590.1 | NC_024149_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8341 | 8622 |
| YP_009032581.1 | NC_024149_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1831 | 2229 |
| YP_009032597.1 | NC_024149_p20 | tail spike | phrog_4636 | tail spike protein | tail | -1 | 13242 | 15188 |
| YP_009032599.1 | NC_024149_p22 | upper collar protein | phrog_2038 | upper collar connector | connector | -1 | 15844 | 16875 |
| YP_009032582.1 | NC_024149_p5 | encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 2219 | 3511 |
| YP_009032579.1 | NC_024149_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1277 | 1624 |
| YP_009032585.1 | NC_024149_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6825 | 7076 |
| YP_009032588.1 | NC_024149_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7617 | 8096 |